BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3424.p (253 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspir... 479 e-133 ref|YP_004753589.1| LivG [Collimonas fungivorans Ter331] >gi|340... 435 e-120 gb|EGW60813.1| ABC transporter related protein [Dechlorosoma sui... 365 4e-99 emb|CAQ18400.1| amino-acid atp-binding protein [Ralstonia solana... 358 5e-97 ref|ZP_07673987.1| amino-acid ATP-binding ABC transporter [Ralst... 352 2e-95 >ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ64423.1| ABC-type amino acid transport system, ATPase component protein [Herbaspirillum seropedicae SmR1] Length = 253 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 246/253 (97%), Positives = 250/253 (98%) Query: 1 MLLQLNDISKNFGGLQVLQGVNFNVKEGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIR 60 MLLQLNDISKNFGGLQVLQGVNFNV++GEIFGLIGPNGAGKTTVFNLITGLLRASSGSIR Sbjct: 1 MLLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIR 60 Query: 61 FNDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHEHLNYGVASMLFNLGGF 120 FNDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMH+HLNYGVASML NLGGF Sbjct: 61 FNDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGF 120 Query: 121 RRAEQEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAG 180 R AE+EARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAG Sbjct: 121 RNAEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAG 180 Query: 181 MNPAEKTELMSEIVNIKARGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNN 240 MNPAEKTELMSEIVNIK RGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNN Sbjct: 181 MNPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNN 240 Query: 241 QEVIEAYLGKEEA 253 QEVIEAYLGKEEA Sbjct: 241 QEVIEAYLGKEEA 253 >ref|YP_004753589.1| LivG [Collimonas fungivorans Ter331] gb|AEK62766.1| LivG [Collimonas fungivorans Ter331] Length = 253 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 220/252 (87%), Positives = 237/252 (94%) Query: 2 LLQLNDISKNFGGLQVLQGVNFNVKEGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 +LQL +ISKNFGGLQVLQ VNFNV +G IFGLIGPNGAGKTTVFNLITGLLRAS G+I F Sbjct: 1 MLQLKNISKNFGGLQVLQDVNFNVPQGGIFGLIGPNGAGKTTVFNLITGLLRASGGAIEF 60 Query: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHEHLNYGVASMLFNLGGFR 121 + DIG VAPHKITERGIARTFQNIRVFKEMTLLENVVVGMH+H++YG S+LFNLGGFR Sbjct: 61 DGADIGKVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHMHYGFGSLLFNLGGFR 120 Query: 122 RAEQEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGM 181 R E +ARERALELLSWVRLDHKA MLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGM Sbjct: 121 RIEAQARERALELLSWVRLDHKAGMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGM 180 Query: 182 NPAEKTELMSEIVNIKARGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQ 241 NPAEKTELM+EI+NIK RGF+IFMIEHDMRFVMGLC+RIAVLNFG+IIAEG+PDQIKNNQ Sbjct: 181 NPAEKTELMTEILNIKQRGFSIFMIEHDMRFVMGLCDRIAVLNFGRIIAEGSPDQIKNNQ 240 Query: 242 EVIEAYLGKEEA 253 EVIEAYLGKE+A Sbjct: 241 EVIEAYLGKEDA 252 >gb|EGW60813.1| ABC transporter related protein [Dechlorosoma suillum PS] Length = 260 Score = 365 bits (936), Expect = 4e-99, Method: Composition-based stats. Identities = 180/251 (71%), Positives = 211/251 (84%) Query: 2 LLQLNDISKNFGGLQVLQGVNFNVKEGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 LL + ++ K+FGGL VLQ V+F V G I+GLIGPNGAGKTTVFNLITGLL S+G I F Sbjct: 9 LLSIRNVGKHFGGLHVLQDVSFEVPAGSIYGLIGPNGAGKTTVFNLITGLLTPSAGQIDF 68 Query: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHEHLNYGVASMLFNLGGFR 121 + + PH+IT +GIARTFQNIR+FKEM LLENV+VGMH+HLNYG + N R Sbjct: 69 QGQTLIGLEPHRITHQGIARTFQNIRIFKEMDLLENVMVGMHDHLNYGGFGIFLNSPACR 128 Query: 122 RAEQEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGM 181 AE++ARERALELLSWV LDHKA MLAD+LSYG+QRKLEFARALAT+PKLLLLDEPVAGM Sbjct: 129 AAEKKARERALELLSWVGLDHKADMLADNLSYGDQRKLEFARALATEPKLLLLDEPVAGM 188 Query: 182 NPAEKTELMSEIVNIKARGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQ 241 NP+EKT LM EI NI+ RG+ +FMIEHDMRFVMGLC+RIAVLNFG+IIAEGTPD+++NN Sbjct: 189 NPSEKTILMEEINNIRNRGYGVFMIEHDMRFVMGLCDRIAVLNFGRIIAEGTPDEVRNNP 248 Query: 242 EVIEAYLGKEE 252 +VIEAYLGKE+ Sbjct: 249 DVIEAYLGKED 259 >emb|CAQ18400.1| amino-acid atp-binding protein [Ralstonia solanacearum MolK2] Length = 265 Score = 358 bits (918), Expect = 5e-97, Method: Composition-based stats. Identities = 178/247 (72%), Positives = 207/247 (83%) Query: 2 LLQLNDISKNFGGLQVLQGVNFNVKEGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 +L+L ISK FGGL VLQ VN V +G IFGLIGPNGAGKTTVFNLITGLL + G++ F Sbjct: 1 MLKLASISKRFGGLSVLQDVNIEVPQGTIFGLIGPNGAGKTTVFNLITGLLEPTGGTLTF 60 Query: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHEHLNYGVASMLFNLGGFR 121 + + PH+IT+ GIARTFQNIR+FKEMTLLENVVVGMH HL+YG +L +L +R Sbjct: 61 DGASLVGKKPHQITQMGIARTFQNIRIFKEMTLLENVVVGMHRHLDYGAPGLLLSLPKYR 120 Query: 122 RAEQEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGM 181 AE+ AR+RALELLSWV+LDHKA +AD+LSYG+QRKLE ARALAT+PKLLLLDEPVAGM Sbjct: 121 SAERRARDRALELLSWVKLDHKARDIADNLSYGDQRKLELARALATEPKLLLLDEPVAGM 180 Query: 182 NPAEKTELMSEIVNIKARGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQ 241 N EK +LM+EI NIKARG+TIFMIEHDMRFVMGLCERIAVLNFG+IIAEG P+ I+NN Sbjct: 181 NTGEKVDLMAEIENIKARGYTIFMIEHDMRFVMGLCERIAVLNFGRIIAEGPPEAIRNNP 240 Query: 242 EVIEAYL 248 +VIEAYL Sbjct: 241 QVIEAYL 247 >ref|ZP_07673987.1| amino-acid ATP-binding ABC transporter [Ralstonia sp. 5_7_47FAA] gb|EFP67662.1| amino-acid ATP-binding ABC transporter [Ralstonia sp. 5_7_47FAA] Length = 272 Score = 352 bits (904), Expect = 2e-95, Method: Composition-based stats. Identities = 182/249 (73%), Positives = 212/249 (85%) Query: 2 LLQLNDISKNFGGLQVLQGVNFNVKEGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 +L+L ISK FGGL VLQ VN V +G IFGLIGPNGAGKTTVFNLITGLL + GS+ F Sbjct: 8 MLKLTSISKRFGGLSVLQDVNIEVPQGSIFGLIGPNGAGKTTVFNLITGLLAPTGGSLTF 67 Query: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHEHLNYGVASMLFNLGGFR 121 N D++ PH+IT+ GIARTFQNIR+FKEMTLLENVVVGMH HL+YG +L +L +R Sbjct: 68 NGDNLVGKKPHQITQMGIARTFQNIRIFKEMTLLENVVVGMHRHLDYGAPGLLLSLPKYR 127 Query: 122 RAEQEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGM 181 AE+ AR+RALELLSWV+LDHKAH +AD+LSYG+QRKLE ARALAT+PKLLLLDEPVAGM Sbjct: 128 AAERRARDRALELLSWVKLDHKAHDIADNLSYGDQRKLELARALATEPKLLLLDEPVAGM 187 Query: 182 NPAEKTELMSEIVNIKARGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQ 241 N EK +LM+EI NIKARG+TIFMIEHDMRFVMGLCERIAVLNFG+IIAEG P+ I+N+ Sbjct: 188 NTGEKVDLMAEIENIKARGYTIFMIEHDMRFVMGLCERIAVLNFGRIIAEGPPEAIRNDP 247 Query: 242 EVIEAYLGK 250 +VIEAYLG+ Sbjct: 248 QVIEAYLGR 256