BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3423.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776330.1| amino acid ABC transporter permease [Herbasp... 474 e-132 ref|ZP_08275460.1| LivM [Oxalobacteraceae bacterium IMCC9480] >g... 411 e-113 ref|YP_004753588.1| putative amino-acid transmembrane ABC transp... 395 e-108 emb|CAQ18399.1| amino-acid transmembrane protein [Ralstonia sola... 358 5e-97 ref|ZP_00946687.1| LivM [Ralstonia solanacearum UW551] >gi|20773... 358 6e-97 >ref|YP_003776330.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64422.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 288 Score = 474 bits (1220), Expect = e-132, Method: Composition-based stats. Identities = 282/288 (97%), Positives = 286/288 (99%) Query: 4 MEWWDGFWATYNTVIFSIGVNAMLALSIYVTLSCGLLSLANAAFMGIGAYTASLLTMQFD 63 MEWWDGFWATYNTVIFSIGVNAMLALSIYVTLSCGLLSLANAAFMGIGAYTASLLTMQF+ Sbjct: 1 MEWWDGFWATYNTVIFSIGVNAMLALSIYVTLSCGLLSLANAAFMGIGAYTASLLTMQFE 60 Query: 64 MPFPIALAAGGVLPSLVALVIGIPTLRLSGVYLAMATLGFGEVVRVIVLNLEITGGPMGL 123 MPFPIALAAGGVLP+LVALVIGIPTLRLSGVYLAMATLGFGEVVRVIVLNL+ITGGPMGL Sbjct: 61 MPFPIALAAGGVLPALVALVIGIPTLRLSGVYLAMATLGFGEVVRVIVLNLDITGGPMGL 120 Query: 124 NGVPPITEWWHIVLLLGVTIYALARLRRSKTGRAFEAIKEDEVAARLMGVNVAGYKLLAF 183 NGVPPITEWWHIVLLLGVTIY LARLRRSK GRAFEAIKEDE+AARLMGVNVAGYKLLAF Sbjct: 121 NGVPPITEWWHIVLLLGVTIYVLARLRRSKIGRAFEAIKEDEIAARLMGVNVAGYKLLAF 180 Query: 184 VIGAAIAGVAGGLNAHFTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILSLLP 243 VIGAAIAGVAGGLNAHFTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILSLLP Sbjct: 181 VIGAAIAGVAGGLNAHFTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILSLLP 240 Query: 244 EVLRHFKDFRLAINGLILILVVLYLPKGIWDPRRIRAFLGRNAEKKVK 291 EVLRHFKDFRLAINGLILILVVLYLPKGIWDPRRIRAFLGRNAEKKVK Sbjct: 241 EVLRHFKDFRLAINGLILILVVLYLPKGIWDPRRIRAFLGRNAEKKVK 288 >ref|ZP_08275460.1| LivM [Oxalobacteraceae bacterium IMCC9480] gb|EGF31071.1| LivM [Oxalobacteraceae bacterium IMCC9480] Length = 289 Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats. Identities = 231/286 (80%), Positives = 258/286 (90%) Query: 4 MEWWDGFWATYNTVIFSIGVNAMLALSIYVTLSCGLLSLANAAFMGIGAYTASLLTMQFD 63 MEWW FW+TYNTVIFSIGVNAMLALSIY+TLSCGLLSLANAAFMGIGAY A++LTMQ D Sbjct: 1 MEWWQAFWSTYNTVIFSIGVNAMLALSIYLTLSCGLLSLANAAFMGIGAYAAAMLTMQGD 60 Query: 64 MPFPIALAAGGVLPSLVALVIGIPTLRLSGVYLAMATLGFGEVVRVIVLNLEITGGPMGL 123 + FP+AL A GVLP+LVAL+IGIPTLRLSGVYLAMATLGFGEVVRVIVLNL++TGGPMGL Sbjct: 61 VSFPLALLAAGVLPALVALIIGIPTLRLSGVYLAMATLGFGEVVRVIVLNLDVTGGPMGL 120 Query: 124 NGVPPITEWWHIVLLLGVTIYALARLRRSKTGRAFEAIKEDEVAARLMGVNVAGYKLLAF 183 NG+P TE+WHI+LLL +T+Y LAR+RRSK GRAFEAIK DEVAA+LMG+NVAGYKLLAF Sbjct: 121 NGIPLKTEFWHILLLLALTLYVLARMRRSKIGRAFEAIKADEVAAQLMGINVAGYKLLAF 180 Query: 184 VIGAAIAGVAGGLNAHFTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILSLLP 243 V GA IAGVAGGLNAH+TFTIGP NY FENAVDILTMAVFGGT+NLIGP +G+TIL+LLP Sbjct: 181 VTGAVIAGVAGGLNAHYTFTIGPGNYAFENAVDILTMAVFGGTANLIGPTLGATILTLLP 240 Query: 244 EVLRHFKDFRLAINGLILILVVLYLPKGIWDPRRIRAFLGRNAEKK 289 EVLR FK FRLA NGLILI+V+LYLPKGIWDP R+RA R + K Sbjct: 241 EVLREFKHFRLAFNGLILIVVILYLPKGIWDPARMRALFKRTSTSK 286 >ref|YP_004753588.1| putative amino-acid transmembrane ABC transporter protein [Collimonas fungivorans Ter331] gb|AEK62765.1| putative amino-acid transmembrane ABC transporter protein [Collimonas fungivorans Ter331] Length = 303 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 232/291 (79%), Positives = 262/291 (90%) Query: 1 MGFMEWWDGFWATYNTVIFSIGVNAMLALSIYVTLSCGLLSLANAAFMGIGAYTASLLTM 60 +GF++WWDGFW+TYNTVIF +GVNAMLALSIYVTLSCGLLSLANAAFMGIGAY ASL++M Sbjct: 8 LGFIDWWDGFWSTYNTVIFGLGVNAMLALSIYVTLSCGLLSLANAAFMGIGAYAASLISM 67 Query: 61 QFDMPFPIALAAGGVLPSLVALVIGIPTLRLSGVYLAMATLGFGEVVRVIVLNLEITGGP 120 Q +PFP+ALA GG LP+LVAL+IGIPTLRLSGVYLAMATLGFGEVVRVIVLN++ITGGP Sbjct: 68 QTGLPFPVALAIGGALPALVALIIGIPTLRLSGVYLAMATLGFGEVVRVIVLNMDITGGP 127 Query: 121 MGLNGVPPITEWWHIVLLLGVTIYALARLRRSKTGRAFEAIKEDEVAARLMGVNVAGYKL 180 +GLNG+P TEWWHIVLLL T+Y LAR+RRSK GRAFEAIKEDEVAARLMGVNVAGYKL Sbjct: 128 LGLNGIPLKTEWWHIVLLLAATLYILARIRRSKIGRAFEAIKEDEVAARLMGVNVAGYKL 187 Query: 181 LAFVIGAAIAGVAGGLNAHFTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILS 240 LAFVIGAAIAGVAGGLNAH+TFTIGP NY FENAV+ILTMAVFGGTS LIGP IG +L+ Sbjct: 188 LAFVIGAAIAGVAGGLNAHYTFTIGPGNYAFENAVEILTMAVFGGTSTLIGPTIGGMVLT 247 Query: 241 LLPEVLRHFKDFRLAINGLILILVVLYLPKGIWDPRRIRAFLGRNAEKKVK 291 LLPE LR F +R +NGLIL+LV+LYLPKGIWDPRRIRA++ + +K + Sbjct: 248 LLPEALRDFNSYRAVVNGLILVLVILYLPKGIWDPRRIRAWVNAFSRRKAQ 298 >emb|CAQ18399.1| amino-acid transmembrane protein [Ralstonia solanacearum MolK2] Length = 299 Score = 358 bits (920), Expect = 5e-97, Method: Composition-based stats. Identities = 192/281 (68%), Positives = 238/281 (84%), Gaps = 1/281 (0%) Query: 4 MEWWDGFWATYNTVIFSIGVNAMLALSIYVTLSCGLLSLANAAFMGIGAYTASLLTMQFD 63 MEW+D FW+ Y+ ++ ++G+NA+LALSIY+TLSCGLL++ANAAFMGIGAYT++LLTM + Sbjct: 1 MEWFDNFWSVYSNLVLTLGINALLALSIYLTLSCGLLAMANAAFMGIGAYTSALLTMNAE 60 Query: 64 MPFPIALAAGGVLPSLVALVIGIPTLRLSGVYLAMATLGFGEVVRVIVLNLE-ITGGPMG 122 MPFP+AL G + P++VA+VIG PTLRLSGVYLAMATLGFGEVVRV++LN E TGG +G Sbjct: 61 MPFPVALLGGMLAPAVVAVVIGRPTLRLSGVYLAMATLGFGEVVRVLILNTENWTGGALG 120 Query: 123 LNGVPPITEWWHIVLLLGVTIYALARLRRSKTGRAFEAIKEDEVAARLMGVNVAGYKLLA 182 LNG+P +TEWWH+ L + +T++ LAR+RRSK GRAFEAIKEDE AA LMG+NVAG KLLA Sbjct: 121 LNGIPQLTEWWHVALAVALTLFVLARMRRSKVGRAFEAIKEDETAAGLMGINVAGTKLLA 180 Query: 183 FVIGAAIAGVAGGLNAHFTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILSLL 242 F +GA IAG+AG LNAH TF IGPN +GF+ V+ILTM + GGTS L GP++GS ILSLL Sbjct: 181 FTLGAVIAGLAGALNAHLTFFIGPNEFGFDRGVEILTMTILGGTSGLTGPVLGSVILSLL 240 Query: 243 PEVLRHFKDFRLAINGLILILVVLYLPKGIWDPRRIRAFLG 283 PE+LR FKDFRL +NGLIL+L+VL+LPKGIWDP R +LG Sbjct: 241 PELLRAFKDFRLVVNGLILMLIVLFLPKGIWDPARFARWLG 281 >ref|ZP_00946687.1| LivM [Ralstonia solanacearum UW551] ref|YP_002256920.1| amino-acid transmembrane protein [Ralstonia solanacearum IPO1609] gb|EAP70832.1| LivM [Ralstonia solanacearum UW551] emb|CAQ58801.1| amino-acid transmembrane protein [Ralstonia solanacearum IPO1609] Length = 299 Score = 358 bits (918), Expect = 6e-97, Method: Composition-based stats. Identities = 191/281 (67%), Positives = 238/281 (84%), Gaps = 1/281 (0%) Query: 4 MEWWDGFWATYNTVIFSIGVNAMLALSIYVTLSCGLLSLANAAFMGIGAYTASLLTMQFD 63 MEW+D FW+ Y+ ++ ++G+NA+LALSIY+TLSCGLL++ANAAFMGIGAYT++LLTM + Sbjct: 1 MEWFDNFWSVYSNLVLTLGINALLALSIYLTLSCGLLAMANAAFMGIGAYTSALLTMNAE 60 Query: 64 MPFPIALAAGGVLPSLVALVIGIPTLRLSGVYLAMATLGFGEVVRVIVLNLE-ITGGPMG 122 MPFP+AL G + P++VA++IG PTLRLSGVYLAMATLGFGEVVRV++LN E TGG +G Sbjct: 61 MPFPVALLGGMLAPAVVAVIIGRPTLRLSGVYLAMATLGFGEVVRVLILNTENWTGGALG 120 Query: 123 LNGVPPITEWWHIVLLLGVTIYALARLRRSKTGRAFEAIKEDEVAARLMGVNVAGYKLLA 182 LNG+P +TEWWH+ L + +T++ LAR+RRSK GRAFEAIKEDE AA LMG+NVAG KLLA Sbjct: 121 LNGIPQLTEWWHVALAVALTLFVLARMRRSKVGRAFEAIKEDETAAGLMGINVAGTKLLA 180 Query: 183 FVIGAAIAGVAGGLNAHFTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILSLL 242 F +GA IAG+AG LNAH TF IGPN +GF+ V+ILTM + GGTS L GP++GS ILSLL Sbjct: 181 FTLGAVIAGLAGALNAHLTFFIGPNEFGFDRGVEILTMTILGGTSGLTGPVLGSVILSLL 240 Query: 243 PEVLRHFKDFRLAINGLILILVVLYLPKGIWDPRRIRAFLG 283 PE+LR FKDFRL +NGLIL+L+VL+LPKGIWDP R +LG Sbjct: 241 PELLRAFKDFRLVVNGLILMLIVLFLPKGIWDPARFARWLG 281