BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3421.p (385 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776328.1| amino acid ABC transporter periplasmic prote... 655 0.0 ref|YP_004753586.1| leucine-, isoleucine-, valine-, threonine-, ... 579 e-163 gb|EGW60816.1| Extracellular ligand-binding receptor [Dechloroso... 473 e-131 emb|CAQ18397.1| amino acid-binding periplasmic protein (pbp) [Ra... 437 e-120 ref|YP_002256922.1| amino acid-binding periplasmic protein (pbp)... 437 e-120 >ref|YP_003776328.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] emb|CAP19672.1| periplasmic component protein [Herbaspirillum seropedicae] gb|ADJ64420.1| ABC-type amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 385 Score = 655 bits (1691), Expect = 0.0, Method: Composition-based stats. Identities = 377/385 (97%), Positives = 382/385 (99%) Query: 1 MQFNTMLKTIPALLIGATLSSAALAADIKLGVAEALTGPAAKYGVAIKNGFTLASEEINA 60 MQFNTMLKTIPALLIGATLS AALAADIKLGVAEALTGPAAKYGVAIKNGFTLASEEINA Sbjct: 1 MQFNTMLKTIPALLIGATLSQAALAADIKLGVAEALTGPAAKYGVAIKNGFTLASEEINA 60 Query: 61 KGGVNGDKLALVIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADPIANAAKV 120 KGGVNGDKLALVIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADPIANAAKV Sbjct: 61 KGGVNGDKLALVIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADPIANAAKV 120 Query: 121 VVFGTSNTADGITAMGPFTFRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSG 180 VVFGTSNTADGITAMGPFTFRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSG Sbjct: 121 VVFGTSNTADGITAMGPFTFRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSG 180 Query: 181 YDVFKATLEQQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTR 240 YDVFKATLE QKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTR Sbjct: 181 YDVFKATLEHQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTR 240 Query: 241 ALGMKQPFIGGNGLNSPKLFEIAKDAGDNTLMGSPWSAENQTPANKAFIAAYKAKFGSDP 300 ALGMKQPFIGGNGLNSPKLFEIAKDAGDNTLMGSPWSAENQTPANKAFI AYKAKFG+DP Sbjct: 241 ALGMKQPFIGGNGLNSPKLFEIAKDAGDNTLMGSPWSAENQTPANKAFITAYKAKFGADP 300 Query: 301 DQFAAQAYDAMYIMADAIKSVKLSGNLAKDRDAVRAALPAVKIDGATGKFAFRAAPAVAG 360 DQFAAQAYDAMYI+ADA+K+VKLSGNLAKDRDA+RAALPAVKIDGATGKFAFRAAPAVAG Sbjct: 301 DQFAAQAYDAMYIVADALKNVKLSGNLAKDRDALRAALPAVKIDGATGKFAFRAAPAVAG 360 Query: 361 KQVGFDADQEAIVNIAKGGKFVLLK 385 KQVGFDADQEAIVNIAKGGKFVLLK Sbjct: 361 KQVGFDADQEAIVNIAKGGKFVLLK 385 >ref|YP_004753586.1| leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Collimonas fungivorans Ter331] gb|AEK62763.1| Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Collimonas fungivorans Ter331] Length = 385 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 324/385 (84%), Positives = 355/385 (92%) Query: 1 MQFNTMLKTIPALLIGATLSSAALAADIKLGVAEALTGPAAKYGVAIKNGFTLASEEINA 60 MQF T+LKT+P L++ + L+SAA AAD+KLG+A ALTGPAAKYGVAIKNGF+LA++E+NA Sbjct: 1 MQFKTILKTLPLLMLASGLASAAHAADVKLGLAAALTGPAAKYGVAIKNGFSLAADEVNA 60 Query: 61 KGGVNGDKLALVIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADPIANAAKV 120 GGVNG+KL LVIEDEQGKKEEAINVFKKLIF+DK L VFGPTLSNSAFAADPIANAAKV Sbjct: 61 AGGVNGNKLLLVIEDEQGKKEEAINVFKKLIFKDKALLVFGPTLSNSAFAADPIANAAKV 120 Query: 121 VVFGTSNTADGITAMGPFTFRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSG 180 V FGTSNTADGITAMGPFTFRNSVMEADVLPVT +AAVKHFGIKKVA+IYGNDDAFTKSG Sbjct: 121 VAFGTSNTADGITAMGPFTFRNSVMEADVLPVTTRAAVKHFGIKKVAIIYGNDDAFTKSG 180 Query: 181 YDVFKATLEQQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTR 240 YDVFK TL QKIPVTTTEAYAKGDVDFKAQLTKIKA NPDAIVCSCL EEAANIILQTR Sbjct: 181 YDVFKGTLADQKIPVTTTEAYAKGDVDFKAQLTKIKASNPDAIVCSCLTEEAANIILQTR 240 Query: 241 ALGMKQPFIGGNGLNSPKLFEIAKDAGDNTLMGSPWSAENQTPANKAFIAAYKAKFGSDP 300 ALGMKQPFIGGNGLNSPKLF+IAK AGD+T+MGSPWS+EN TPANKAFIAAYKAKFGSDP Sbjct: 241 ALGMKQPFIGGNGLNSPKLFDIAKGAGDDTIMGSPWSSENLTPANKAFIAAYKAKFGSDP 300 Query: 301 DQFAAQAYDAMYIMADAIKSVKLSGNLAKDRDAVRAALPAVKIDGATGKFAFRAAPAVAG 360 DQFAAQAYDA++++A A+K +KLSG L KDR A++ ALPAV IDGATGKFAFR AP V G Sbjct: 301 DQFAAQAYDALHVVAAALKKIKLSGALDKDRIALQQALPAVTIDGATGKFAFRKAPPVTG 360 Query: 361 KQVGFDADQEAIVNIAKGGKFVLLK 385 K+VG+DA QEAIVNIAKGGKF+LLK Sbjct: 361 KEVGYDAQQEAIVNIAKGGKFILLK 385 >gb|EGW60816.1| Extracellular ligand-binding receptor [Dechlorosoma suillum PS] Length = 384 Score = 473 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 252/355 (70%), Positives = 298/355 (83%) Query: 27 DIKLGVAEALTGPAAKYGVAIKNGFTLASEEINAKGGVNGDKLALVIEDEQGKKEEAINV 86 DIK+GVA ALTG AA+YGVAI+NGF LA++EINAKGGVNG+K+ LV+EDEQGKKEE INV Sbjct: 24 DIKIGVAAALTGGAAQYGVAIRNGFQLAADEINAKGGVNGNKIQLVVEDEQGKKEEGINV 83 Query: 87 FKKLIFQDKVLAVFGPTLSNSAFAADPIANAAKVVVFGTSNTADGITAMGPFTFRNSVME 146 FKKLIFQDKVL VFGPTLSNS FAA P+AN AK VVFGTS TA+GIT +GP+ FRNSVME Sbjct: 84 FKKLIFQDKVLMVFGPTLSNSMFAAGPVANGAKTVVFGTSVTANGITDIGPYVFRNSVME 143 Query: 147 ADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSGYDVFKATLEQQKIPVTTTEAYAKGDV 206 +DVLPVTV A KH+ +K+VAVIYGNDDAFTKSGYDVFK LE QK+PVTTTE Y KGDV Sbjct: 144 SDVLPVTVATATKHYKLKQVAVIYGNDDAFTKSGYDVFKKVLEDQKLPVTTTETYVKGDV 203 Query: 207 DFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTRALGMKQPFIGGNGLNSPKLFEIAKDA 266 DFKAQLTKIKA NPDA++CSCLAEEAANI+LQ R LG+K PFIGGNG NSPKLFEI+K A Sbjct: 204 DFKAQLTKIKASNPDAVICSCLAEEAANIMLQARGLGIKVPFIGGNGFNSPKLFEISKLA 263 Query: 267 GDNTLMGSPWSAENQTPANKAFIAAYKAKFGSDPDQFAAQAYDAMYIMADAIKSVKLSGN 326 G+ T +GSPWS N PANKAF+AAY K+ ++P+QFAAQA+DA+++ A A++ VKLSG+ Sbjct: 264 GEGTFVGSPWSNTNPAPANKAFVAAYVKKYNAEPNQFAAQAFDALHVAAAALQEVKLSGD 323 Query: 327 LAKDRDAVRAALPAVKIDGATGKFAFRAAPAVAGKQVGFDADQEAIVNIAKGGKF 381 +A DR+A++ ALP I+GATG F FR A +GK G+DADQ+ + + KGGKF Sbjct: 324 IAADREALKNALPKATINGATGPFKFRPAVTKSGKPGGWDADQKPFIYVVKGGKF 378 >emb|CAQ18397.1| amino acid-binding periplasmic protein (pbp) [Ralstonia solanacearum MolK2] Length = 406 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 245/359 (68%), Positives = 281/359 (78%), Gaps = 1/359 (0%) Query: 27 DIKLGVAEALTGPAAKYGVAIKNGFTLASEEINAKGGVNGDKLALVIEDEQGKKEEAINV 86 DIK+GVAEAL+G AA+YG AI+NGF LA++EINA GG+NG K+ALVIEDEQGKKEEAINV Sbjct: 49 DIKIGVAEALSGGAAQYGAAIRNGFQLAADEINAAGGINGSKIALVIEDEQGKKEEAINV 108 Query: 87 FKKLIFQDKVLAVFGPTLSNSAFAADPIANAAKVVVFGTSNTADGITAMGPFTFRNSVME 146 FKKLIFQDKV VFGPTLSNSA AADPIA AK VVFGTSNTADGIT++G + FRNSV E Sbjct: 109 FKKLIFQDKVAMVFGPTLSNSAQAADPIAQGAKTVVFGTSNTADGITSIGDYVFRNSVTE 168 Query: 147 ADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSGYDVFKATLEQQKIPVTTTEAYAKGDV 206 ADVLP T++ K G+KKVAV+YGNDD FTKSGYD FK LE KIPVTTTE +AKGDV Sbjct: 169 ADVLPATIQTVAKKAGVKKVAVLYGNDDVFTKSGYDNFKKALEDLKIPVTTTETFAKGDV 228 Query: 207 DFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTRALGMKQPFIGGNGLNSPKLFEIAKDA 266 DFKAQLTKIKA NPDAIV S L E I++Q R LG+ P IGGNG+NS K+F++A+D Sbjct: 229 DFKAQLTKIKASNPDAIVLSALIAEGGPIMVQARQLGLNVPVIGGNGMNSVKVFDLARDK 288 Query: 267 GDNTLMGSPWSAENQTPANKAFIAAYKAKFGSDPDQFAAQAYDAMYIMADAIKSVKLSGN 326 DN +GSPWS EN TP N FI AY +K+ + PDQFAAQAYDAMYI A A+K+VK SG+ Sbjct: 289 ADNLWVGSPWSIENHTPENSKFITAYTSKYKAAPDQFAAQAYDAMYIAAKALKAVKFSGS 348 Query: 327 LAKDRDAVRAALPAVKIDGATGKFAFRAAPAVAGKQVGFDADQEAIVNIAKGGKFVLLK 385 L DR AVR ALPAVK GATG FAFR A GK G+DA Q IV++ K GK+ + K Sbjct: 349 LEADRKAVRDALPAVKHTGATGAFAFRQVTA-RGKPAGYDAVQTPIVSVTKAGKYTIEK 406 >ref|YP_002256922.1| amino acid-binding periplasmic protein (pbp) [Ralstonia solanacearum IPO1609] emb|CAQ58803.1| amino acid-binding periplasmic protein (pbp) [Ralstonia solanacearum IPO1609] Length = 406 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 245/359 (68%), Positives = 280/359 (77%), Gaps = 1/359 (0%) Query: 27 DIKLGVAEALTGPAAKYGVAIKNGFTLASEEINAKGGVNGDKLALVIEDEQGKKEEAINV 86 DIK+GVAEAL+G AA+YG AI+NGF LA++EINA GG+NG K+ALVIEDEQGKKEEAINV Sbjct: 49 DIKIGVAEALSGGAAQYGAAIRNGFQLAADEINAAGGINGSKIALVIEDEQGKKEEAINV 108 Query: 87 FKKLIFQDKVLAVFGPTLSNSAFAADPIANAAKVVVFGTSNTADGITAMGPFTFRNSVME 146 FKKLIFQDKV VFGPTLSNSA AADPIA AK VVFGTSNTADGIT++G + FRNSV E Sbjct: 109 FKKLIFQDKVAMVFGPTLSNSAQAADPIAQGAKTVVFGTSNTADGITSIGDYVFRNSVTE 168 Query: 147 ADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSGYDVFKATLEQQKIPVTTTEAYAKGDV 206 ADVLP T++ K G+KKVAV+YGNDD FTKSGYD FK LE KIPVTTTE +AKGDV Sbjct: 169 ADVLPATIQTVAKKAGVKKVAVLYGNDDVFTKSGYDNFKKALEDLKIPVTTTETFAKGDV 228 Query: 207 DFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTRALGMKQPFIGGNGLNSPKLFEIAKDA 266 DFKAQLTKIKA NPDAIV S L E I++Q R LG+ P IGGNG+NS K+F++A+D Sbjct: 229 DFKAQLTKIKASNPDAIVLSALIAEGGPIMVQARQLGLNVPVIGGNGMNSVKVFDLARDK 288 Query: 267 GDNTLMGSPWSAENQTPANKAFIAAYKAKFGSDPDQFAAQAYDAMYIMADAIKSVKLSGN 326 DN +GSPWS EN TP N FI AY +K+ + PDQFAAQAYDAMYI A A+K VK SG+ Sbjct: 289 ADNLWVGSPWSIENHTPENSKFITAYTSKYKAAPDQFAAQAYDAMYIAAKALKVVKFSGS 348 Query: 327 LAKDRDAVRAALPAVKIDGATGKFAFRAAPAVAGKQVGFDADQEAIVNIAKGGKFVLLK 385 L DR AVR ALPAVK GATG FAFR A GK G+DA Q IV++ K GK+ + K Sbjct: 349 LEADRKAVRDALPAVKHTGATGAFAFRQVTA-RGKPAGYDAVQTPIVSVTKAGKYTIEK 406