BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3419.p (315 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776324.1| signal transduction protein [Herbaspirillum ... 489 e-136 ref|YP_003776030.1| hypothetical protein Hsero_2626 [Herbaspiril... 228 1e-57 ref|ZP_01307832.1| hypothetical protein RED65_02824 [Oceanobacte... 217 2e-54 ref|YP_002945463.1| signal transduction protein [Variovorax para... 214 1e-53 ref|YP_003052252.1| putative signal transduction protein [Methyl... 197 2e-48 >ref|YP_003776324.1| signal transduction protein [Herbaspirillum seropedicae SmR1] gb|ADJ64416.1| signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 250/276 (90%), Positives = 266/276 (96%), Gaps = 2/276 (0%) Query: 40 MNLEALFQQQTALPSIPKVVQEVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYY 99 MNLEALFQQQTALPSIPKVVQEVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYY Sbjct: 1 MNLEALFQQQTALPSIPKVVQEVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYY 60 Query: 100 HVSRTIGTVDDAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTAIVAKWLA 159 HVSRTIGTVDDAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTA+VAKWLA Sbjct: 61 HVSRTIGTVDDAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTALVAKWLA 120 Query: 160 KQKQVKLNSDFAFTVGLMHAIGQLVMHAGMPEQALEVDKVAGPLDARRLDVERQSFGYDF 219 K+ KLNSDFAFTVGLMHAIGQLVMHAGMPEQAL+VDKVAGPLDARRLDVER+SFGYDF Sbjct: 121 KRG--KLNSDFAFTVGLMHAIGQLVMHAGMPEQALQVDKVAGPLDARRLDVERKSFGYDF 178 Query: 220 ADVGAELARRWRFPDEFAKVIKAFPQPLKGEFDPFAAVVHLAAWRARAEENKYSADELES 279 ADVGAELARRWRFPDEFAKVI+AFPQPL+GEFDPFAA+VHLAAWRARA EN+YS +EL + Sbjct: 179 ADVGAELARRWRFPDEFAKVIEAFPQPLQGEFDPFAAIVHLAAWRARAHENQYSDEELAA 238 Query: 280 TFPAEVAAKLGLSLSTFTEDMPPLAELGEGMQDLIS 315 TFPAEVA +LG+ L TFT++MPPL ELGEGMQ+LI+ Sbjct: 239 TFPAEVAERLGVRLETFTQEMPPLEELGEGMQELIA 274 >ref|YP_003776030.1| hypothetical protein Hsero_2626 [Herbaspirillum seropedicae SmR1] gb|ADJ64122.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 290 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 126/289 (43%), Positives = 177/289 (61%), Gaps = 14/289 (4%) Query: 40 MNLEALFQQQTALPSIPKVVQEVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYY 99 M L++L Q LP++PKVVQ+++ SFN E +S EIA+++A D LSAK+LRLANS+++ Sbjct: 1 MELKSLVDQPGKLPTVPKVVQQLMASFNAEDISAHEIAQQIATDPALSAKVLRLANSAFF 60 Query: 100 HVSRTIGTVDDAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTAIVAKWLA 159 H SRTIGTVDDA+ +LGF+ VR LV+ GM +FK G+DL FWR++L TA+ A+WLA Sbjct: 61 HASRTIGTVDDALRILGFIMVRNLVLGNGMVAAFKNTRGMDLHQFWRHTLYTAVAARWLA 120 Query: 160 KQKQV--KLNSDFAFTVGLMHAIGQLVMHAGMPEQALEVDKVAGPLDARRLDVERQSFGY 217 + + N D FTVG+MH IGQL +HA +D+ + LD+ R + E++++G+ Sbjct: 121 MHAGMVGEDNGDAVFTVGMMHGIGQLQLHAVAANAVAPLDRHSNVLDSDRAEREKEAWGF 180 Query: 218 DFADVGAELARRWRFPDEFAKVIKAFPQPL-KGEFDPFAAVVHLAAWRARAEENKYSADE 276 +ADV AELA W FPD +++ P PL G FD AA VHL W AR + Sbjct: 181 HYADVSAELAAIWHFPDALVTALRSVPDPLGAGRFDRAAAWVHLGGWAARVAILSQDDEN 240 Query: 277 LESTFPAEVAAKLGLS------LSTFTED-----MPPLAELGEGMQDLI 314 ++T+PA V KLG+ L D MP L EL G+ ++ Sbjct: 241 AQATYPAAVGKKLGVDPAWMPLLVKHDPDKAERAMPSLGELAAGLDAML 289 >ref|ZP_01307832.1| hypothetical protein RED65_02824 [Oceanobacter sp. RED65] gb|EAT11569.1| hypothetical protein RED65_02824 [Oceanobacter sp. RED65] Length = 275 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 107/277 (38%), Positives = 179/277 (64%), Gaps = 4/277 (1%) Query: 40 MNLEALFQQQTALPSIPKVVQEVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYY 99 M+ +A+F + LPSIPKVVQ++IE+FN++ +++IA K++ D VL+AK+LRLANS++Y Sbjct: 1 MDFDAIFAKSPPLPSIPKVVQDLIETFNHDDFDMDDIATKISMDPVLTAKVLRLANSAHY 60 Query: 100 HVSRTIGTVDDAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTAIVAKWLA 159 VSRTIG+ +A ++LGF T+RTLV+++G++G+ K P D + +W + A +A+WLA Sbjct: 61 GVSRTIGSTSEASVLLGFSTLRTLVLASGISGAIKTPPEFDREGYWNDNFAVAAIARWLA 120 Query: 160 KQKQVKLNSDFAFTVGLMHAIGQLVMHAGMPEQALEVDKVAGPLDARRLDVERQSFGYDF 219 +N + AFT G++H+IG+L++ +P++A +V+K A +RLD+E GY++ Sbjct: 121 --PYCGINGETAFTAGMLHSIGELILQLVLPDEAKKVEK-AMQFGGKRLDLENAMLGYNY 177 Query: 220 ADVGAELARRWRFPDEFAKVIKAFPQPLKGE-FDPFAAVVHLAAWRARAEENKYSADELE 278 A++GAELA+RW+FP++ I P PL + P A ++H++ + + + K S DE+ Sbjct: 178 AEIGAELAKRWKFPNDIVNGICQHPNPLNFDPISPLAGLLHISCYIHESHKQKLSDDEIL 237 Query: 279 STFPAEVAAKLGLSLSTFTEDMPPLAELGEGMQDLIS 315 FP VA + + D+ L ++ GM L + Sbjct: 238 EDFPTTVAHAIDMDSVNAKADIEQLHDVESGMDLLFT 274 >ref|YP_002945463.1| signal transduction protein [Variovorax paradoxus S110] gb|ACS20197.1| putative signal transduction protein [Variovorax paradoxus S110] Length = 275 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 115/278 (41%), Positives = 175/278 (62%), Gaps = 5/278 (1%) Query: 40 MNLEALFQQQTALPSIPKVVQEVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYY 99 M L+ LF LP++PKVV ++IE NE ++ +A+K+ DQVL+A++LR+ANS Y+ Sbjct: 1 MTLDELFTDSHLLPTVPKVVFDLIELLRNEDAAVSVVARKIELDQVLTARVLRMANSPYF 60 Query: 100 HVSRTIGTVDDAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTAIVAKWLA 159 + R I ++ DA+ +LGF ++R+LVVS+G+ G+F+K+ GV+L FW +SL A VA++LA Sbjct: 61 GLRRKILSIQDAIQLLGFSSIRSLVVSSGLTGTFRKVEGVNLPAFWSHSLRVAAVARYLA 120 Query: 160 KQKQVKLNSDFAFTVGLMHAIGQLVMHAGMPEQALEVDKVAGPLDAR-RLDVERQSFGYD 218 + + +++ AFTVG MHAIG L+M M + E++ A P D RL+VERQ FG+ Sbjct: 121 GKTR-RVDQSLAFTVGSMHAIGHLIMAGAMKQPMAELN-AAHPFDRMGRLEVERQKFGFH 178 Query: 219 FADVGAELARRWRFPDEFAKVIKAFPQPLKGE-FDPFAAVVHLAAWRARAEENKYSADEL 277 + VGA LA RW F EF + +F P++ E DP A+V+HLA WR E + Sbjct: 179 YGQVGARLAARWEFAPEFVSALSSFANPMEAEQVDPLASVLHLAVWRVALEREGLRIGDA 238 Query: 278 ESTFPAEVAAKLGLSLSTFTEDMPPLAELGEGMQDLIS 315 + +PA+ A +GLS +DMP EL ++ +I+ Sbjct: 239 QHVWPAQPADAIGLS-EDVMQDMPAPRELASDLESMIA 275 >ref|YP_003052252.1| putative signal transduction protein [Methylovorus glucosetrophus SIP3-4] gb|ACT51725.1| putative signal transduction protein [Methylovorus glucosetrophus SIP3-4] Length = 275 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 109/251 (43%), Positives = 157/251 (62%), Gaps = 3/251 (1%) Query: 42 LEALFQQQTALPSIPKVVQEVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYYHV 101 ++ F LP++PKVVQEVI +NE V + E+ ++A DQVLSAK+LR+ANSSYY V Sbjct: 4 VDKFFHSILNLPTLPKVVQEVILMLDNEDVDLGELGARIAHDQVLSAKVLRMANSSYYGV 63 Query: 102 SRTIGTVDDAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTAIVAKWLAKQ 161 SRTI T+ DA+ ++G +RTLV+++G+ G+F LPG+D+ FWR+SL TA VA ++ Sbjct: 64 SRTIKTIPDAISVIGVSKLRTLVIASGVTGTFTTLPGLDINRFWRHSLVTAAVAGKIS-- 121 Query: 162 KQVKLNSDFAFTVGLMHAIGQLVMHAGMPEQALEVDKVAGPLDA-RRLDVERQSFGYDFA 220 +++K ++ A+ LMH+IGQL++H P QA E+D+ L R +E + G D Sbjct: 122 QELKKPTETAYLAALMHSIGQLLIHIVFPIQAAEIDEECKGLSVIERKALENATLGLDHC 181 Query: 221 DVGAELARRWRFPDEFAKVIKAFPQPLKGEFDPFAAVVHLAAWRARAEENKYSADELEST 280 VGAELARRW FP++ +VI+ + PL A VV +AA A EN + + T Sbjct: 182 QVGAELARRWNFPEDIQRVIRYYADPLDKMACDLAPVVFMAAHIAFGLENLEESAHIAET 241 Query: 281 FPAEVAAKLGL 291 EVA LG+ Sbjct: 242 LKPEVAKALGV 252