BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3410.p (566 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776316.1| peptide chain release factor 3 [Herbaspirill... 1077 0.0 ref|YP_001352764.1| peptide chain release factor 3 [Janthinobact... 992 0.0 ref|YP_004752077.1| peptide chain release factor 3 [Collimonas f... 984 0.0 ref|YP_001099253.1| peptide chain release factor 3 [Herminiimona... 980 0.0 ref|ZP_04577775.1| peptide chain release factor 3 [Oxalobacter f... 932 0.0 >ref|YP_003776316.1| peptide chain release factor 3 [Herbaspirillum seropedicae SmR1] gb|ADJ64408.1| peptide chain release factor 3 (RF-3) protein [Herbaspirillum seropedicae SmR1] Length = 530 Score = 1077 bits (2784), Expect = 0.0, Method: Composition-based stats. Identities = 527/530 (99%), Positives = 530/530 (100%) Query: 37 LIAREVKRRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKARKSGRHATSDWMEIEK 96 +IAREVKRRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKARKSGRHATSDWMEIEK Sbjct: 1 MIAREVKRRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKARKSGRHATSDWMEIEK 60 Query: 97 QRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEEQTI 156 QRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEEQTI Sbjct: 61 QRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEEQTI 120 Query: 157 KLLNVCRMRNTPIITFMNKLDRETRDSLELLDELESVLKIQCAPVTWPIGMGKNFRGVYH 216 KLLNVCRMRNTPIITFMNKLDRETRDSLELLDELESVLKIQCAPVTWPIGMGKNFRGVYH Sbjct: 121 KLLNVCRMRNTPIITFMNKLDRETRDSLELLDELESVLKIQCAPVTWPIGMGKNFRGVYH 180 Query: 217 LLRDEIMLFKAGEERANGNVEIIKGIDNPKLAEMFPLEIEQLKMEVELVHGASHPFNLED 276 LLRDEIMLFKAGEERANGNVEIIKGIDNPKLAEMFPLEIEQLKMEVELVHGASHPFNL+D Sbjct: 181 LLRDEIMLFKAGEERANGNVEIIKGIDNPKLAEMFPLEIEQLKMEVELVHGASHPFNLDD 240 Query: 277 FLAGVQTPVFFGSAINNFGVREILDALLDWAPGPGGRDATVREVKPTEEPFSGFVFKIQA 336 FLAGVQTPVFFGSAINNFGVREILDALLDWAPGPGGRDATVREVKPTEEPFSGFVFKIQA Sbjct: 241 FLAGVQTPVFFGSAINNFGVREILDALLDWAPGPGGRDATVREVKPTEEPFSGFVFKIQA 300 Query: 337 NMDPAHRDRIAFLRVCSGRFERGMKLKHLRLNRDIKVSSVVTFMASSREQVEEAYAGDII 396 NMDPAHRDRIAFLRVCSGRFERGMKLKHLRLNRDIKVSSVVTFMASSREQVEEAYAGDII Sbjct: 301 NMDPAHRDRIAFLRVCSGRFERGMKLKHLRLNRDIKVSSVVTFMASSREQVEEAYAGDII 360 Query: 397 GLPNHGNMQIGDSFSEGEMLQFTGIPYFAPDFFRVARIRNPLKIKQLHKGLQQLGEEGAV 456 GLPNHGNMQIGDSFSEGEMLQFTGIPYFAPDFFRVARIRNPLKIKQLHKGLQQLGEEGAV Sbjct: 361 GLPNHGNMQIGDSFSEGEMLQFTGIPYFAPDFFRVARIRNPLKIKQLHKGLQQLGEEGAV 420 Query: 457 QVFKPVTGSDLILGAVGVLQFEVVASRLLNEYGVDAVFEGTSISSARWISCDDKKKLADF 516 QVFKPVTGSDLILGAVGVLQFEVVASRLLNEYGVDAVFEGTSISSARWISCDDKKKLADF Sbjct: 421 QVFKPVTGSDLILGAVGVLQFEVVASRLLNEYGVDAVFEGTSISSARWISCDDKKKLADF 480 Query: 517 EKSSAGANLAIDAAGNLAYLASSGVNLRLTQERWPEITFHATREHAAKLD 566 EKSSAGANLAIDAAGN+AYLASSGVNLRLTQERWPEITFHATREHAAKLD Sbjct: 481 EKSSAGANLAIDAAGNMAYLASSGVNLRLTQERWPEITFHATREHAAKLD 530 >ref|YP_001352764.1| peptide chain release factor 3 [Janthinobacterium sp. Marseille] gb|ABR88278.1| peptide chain release factor RF-3 [Janthinobacterium sp. Marseille] Length = 556 Score = 992 bits (2564), Expect = 0.0, Method: Composition-based stats. Identities = 490/554 (88%), Positives = 511/554 (92%), Gaps = 1/554 (0%) Query: 13 ASAPEAADADNASAPGAATK-VSSDLIAREVKRRRTFGIISHPDAGKTTLTEKLLLFSGA 71 ++APE +D+A + VSSDLI EV RRRTFGIISHPDAGKTTLTEKLLLFSGA Sbjct: 2 SAAPELPTSDSAETEAFEPRTVSSDLINSEVARRRTFGIISHPDAGKTTLTEKLLLFSGA 61 Query: 72 IQLAGTVKARKSGRHATSDWMEIEKQRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDT 131 IQLAGTVK RKSGRHATSDWM+IEKQRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDT Sbjct: 62 IQLAGTVKGRKSGRHATSDWMDIEKQRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDT 121 Query: 132 YRVLTAVDSALMVIDAAKGVEEQTIKLLNVCRMRNTPIITFMNKLDRETRDSLELLDELE 191 YRVLTAVDSALMVIDAAKGVEEQTIKLLNVCRMRNTPIITFMNKLDRETRD LELLDELE Sbjct: 122 YRVLTAVDSALMVIDAAKGVEEQTIKLLNVCRMRNTPIITFMNKLDRETRDPLELLDELE 181 Query: 192 SVLKIQCAPVTWPIGMGKNFRGVYHLLRDEIMLFKAGEERANGNVEIIKGIDNPKLAEMF 251 SVLKI+CAPVTWPIGMGKNFRGVYHLLRDEIMLF AG E+A+ E+IKGIDNP+LAEMF Sbjct: 182 SVLKIECAPVTWPIGMGKNFRGVYHLLRDEIMLFAAGNEKADQTFEVIKGIDNPRLAEMF 241 Query: 252 PLEIEQLKMEVELVHGASHPFNLEDFLAGVQTPVFFGSAINNFGVREILDALLDWAPGPG 311 P EIEQLKMEVELVHGASHPF L+ FL G +TPVFFGSAINNFGVREIL+ALLDWA P Sbjct: 242 PQEIEQLKMEVELVHGASHPFELDAFLNGTRTPVFFGSAINNFGVREILNALLDWAQPPR 301 Query: 312 GRDATVREVKPTEEPFSGFVFKIQANMDPAHRDRIAFLRVCSGRFERGMKLKHLRLNRDI 371 RDATVR VKPTE PFSGFVFKIQANMDPAHRDRIAFLRVCSGRFERGMK+KHLRLNR+I Sbjct: 302 ERDATVRSVKPTELPFSGFVFKIQANMDPAHRDRIAFLRVCSGRFERGMKIKHLRLNREI 361 Query: 372 KVSSVVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGEMLQFTGIPYFAPDFFRV 431 KVSSVVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGE+LQFTGIPYFAPDFFR Sbjct: 362 KVSSVVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGELLQFTGIPYFAPDFFRS 421 Query: 432 ARIRNPLKIKQLHKGLQQLGEEGAVQVFKPVTGSDLILGAVGVLQFEVVASRLLNEYGVD 491 RIRNPLKIKQLHKGLQQLGEEGA+QVFKPV SDLILG VGVLQFEVVASRLLNEYGVD Sbjct: 422 VRIRNPLKIKQLHKGLQQLGEEGAIQVFKPVNSSDLILGGVGVLQFEVVASRLLNEYGVD 481 Query: 492 AVFEGTSISSARWISCDDKKKLADFEKSSAGANLAIDAAGNLAYLASSGVNLRLTQERWP 551 AVFEGTSISSARWI+CDDKK LA+FEKSSAG NLA DAAGNLAYLASSGVNLRLTQERWP Sbjct: 482 AVFEGTSISSARWITCDDKKMLAEFEKSSAGHNLAHDAAGNLAYLASSGVNLRLTQERWP 541 Query: 552 EITFHATREHAAKL 565 +TFH TREHA KL Sbjct: 542 GVTFHETREHAVKL 555 >ref|YP_004752077.1| peptide chain release factor 3 [Collimonas fungivorans Ter331] gb|AEK61254.1| Peptide chain release factor 3 [Collimonas fungivorans Ter331] Length = 559 Score = 984 bits (2543), Expect = 0.0, Method: Composition-based stats. Identities = 481/566 (84%), Positives = 512/566 (90%), Gaps = 7/566 (1%) Query: 1 MQEPSNELPEVAASAPEAADADNASAPGAATKVSSDLIAREVKRRRTFGIISHPDAGKTT 60 MQEP +E P ++ DN +A A VS + IA EV RRRTFGIISHPDAGKTT Sbjct: 1 MQEPVSEQPNLSG-------VDNDAADIVAHNVSVEQIATEVARRRTFGIISHPDAGKTT 53 Query: 61 LTEKLLLFSGAIQLAGTVKARKSGRHATSDWMEIEKQRGISVASSVMQFEYRDHVVNLLD 120 LTEKLLLFSGAIQLAGTVK RKSGRHATSDWM+IEKQRGISVASSVMQFEYRDHVVNLLD Sbjct: 54 LTEKLLLFSGAIQLAGTVKGRKSGRHATSDWMDIEKQRGISVASSVMQFEYRDHVVNLLD 113 Query: 121 TPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEEQTIKLLNVCRMRNTPIITFMNKLDRET 180 TPGHQDFSEDTYRVLTAVDSALMVIDAAKGVE QTIKLLNVCRMRNTPIIT MNK+DRET Sbjct: 114 TPGHQDFSEDTYRVLTAVDSALMVIDAAKGVETQTIKLLNVCRMRNTPIITLMNKMDRET 173 Query: 181 RDSLELLDELESVLKIQCAPVTWPIGMGKNFRGVYHLLRDEIMLFKAGEERANGNVEIIK 240 RD LELLDELESVLKIQCAPVTWPIGMGK FRGVYHLLRDEI+LF AG ++A+ E+IK Sbjct: 174 RDPLELLDELESVLKIQCAPVTWPIGMGKTFRGVYHLLRDEILLFAAGNDKADQTFEVIK 233 Query: 241 GIDNPKLAEMFPLEIEQLKMEVELVHGASHPFNLEDFLAGVQTPVFFGSAINNFGVREIL 300 GIDNP+L EMFP EIEQL+MEVELVHGASHPF+ E FLAGVQTPVFFGSAINNFG+REIL Sbjct: 234 GIDNPRLDEMFPREIEQLRMEVELVHGASHPFDQEAFLAGVQTPVFFGSAINNFGIREIL 293 Query: 301 DALLDWAPGPGGRDATVREVKPTEEPFSGFVFKIQANMDPAHRDRIAFLRVCSGRFERGM 360 +AL+DWA PG RDATVR V+P E FSGFVFKIQANMDPAHRDRIAFLRVCSG F+RGM Sbjct: 294 NALIDWAQPPGSRDATVRTVEPKEASFSGFVFKIQANMDPAHRDRIAFLRVCSGHFQRGM 353 Query: 361 KLKHLRLNRDIKVSSVVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGEMLQFTG 420 K+KHLRLNR+IKVS+VVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGEMLQFTG Sbjct: 354 KIKHLRLNREIKVSNVVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGEMLQFTG 413 Query: 421 IPYFAPDFFRVARIRNPLKIKQLHKGLQQLGEEGAVQVFKPVTGSDLILGAVGVLQFEVV 480 IPYFAPDFFR RIRNPLKIKQLHKGLQQLGEEGA+QVFKPVT SDL+LG VGVLQFEVV Sbjct: 414 IPYFAPDFFRSVRIRNPLKIKQLHKGLQQLGEEGAIQVFKPVTSSDLVLGGVGVLQFEVV 473 Query: 481 ASRLLNEYGVDAVFEGTSISSARWISCDDKKKLADFEKSSAGANLAIDAAGNLAYLASSG 540 ASRLLNEYGVDAVFEGTSISSARWI+CDDKK LADFEKSSAG N+A DAAGN+AYLASSG Sbjct: 474 ASRLLNEYGVDAVFEGTSISSARWITCDDKKILADFEKSSAGHNVAYDAAGNMAYLASSG 533 Query: 541 VNLRLTQERWPEITFHATREHAAKLD 566 VNLRLTQERWP++ FH TREHA KL+ Sbjct: 534 VNLRLTQERWPQVVFHETREHAVKLN 559 >ref|YP_001099253.1| peptide chain release factor 3 [Herminiimonas arsenicoxydans] emb|CAL61126.1| peptide chain release factor 3 (RF-3) [Herminiimonas arsenicoxydans] Length = 564 Score = 980 bits (2533), Expect = 0.0, Method: Composition-based stats. Identities = 483/562 (85%), Positives = 513/562 (91%), Gaps = 9/562 (1%) Query: 13 ASAPEAADADNASAPGAATK---------VSSDLIAREVKRRRTFGIISHPDAGKTTLTE 63 ++ PE+ +D++++ +A VS++LIA EV RRRTFGIISHPDAGKTTLTE Sbjct: 2 SATPESPTSDDSASTDSAIASESAAEARAVSAELIASEVARRRTFGIISHPDAGKTTLTE 61 Query: 64 KLLLFSGAIQLAGTVKARKSGRHATSDWMEIEKQRGISVASSVMQFEYRDHVVNLLDTPG 123 KLLLFSGAIQLAGTVK RKS RHATSDWM+IEKQRGISVASSVMQFEYRDHVVNLLDTPG Sbjct: 62 KLLLFSGAIQLAGTVKGRKSARHATSDWMDIEKQRGISVASSVMQFEYRDHVVNLLDTPG 121 Query: 124 HQDFSEDTYRVLTAVDSALMVIDAAKGVEEQTIKLLNVCRMRNTPIITFMNKLDRETRDS 183 HQDFSEDTYRVLTAVDSALMVIDAAKGVE QTIKLLNVCRMRNTPIITFMNKLDRETRD Sbjct: 122 HQDFSEDTYRVLTAVDSALMVIDAAKGVETQTIKLLNVCRMRNTPIITFMNKLDRETRDP 181 Query: 184 LELLDELESVLKIQCAPVTWPIGMGKNFRGVYHLLRDEIMLFKAGEERANGNVEIIKGID 243 LELLDELESVLKI+CAPVTWPIGMGKNFRGVYHLLRDEIMLF G E+A+ E++KGID Sbjct: 182 LELLDELESVLKIECAPVTWPIGMGKNFRGVYHLLRDEIMLFAPGSEKADQTFEVVKGID 241 Query: 244 NPKLAEMFPLEIEQLKMEVELVHGASHPFNLEDFLAGVQTPVFFGSAINNFGVREILDAL 303 NP+LAEMFP EIEQLKMEVELVHGASHPF+L+ FL G +TPVFFGSAINNFGVREIL+AL Sbjct: 242 NPRLAEMFPQEIEQLKMEVELVHGASHPFDLDAFLNGTRTPVFFGSAINNFGVREILNAL 301 Query: 304 LDWAPGPGGRDATVREVKPTEEPFSGFVFKIQANMDPAHRDRIAFLRVCSGRFERGMKLK 363 LDWA P RDATVR VKP E PFSGFVFKIQANMDPAHRDRIAFLRVCSGRFERGMK+K Sbjct: 302 LDWAQPPRERDATVRSVKPIELPFSGFVFKIQANMDPAHRDRIAFLRVCSGRFERGMKVK 361 Query: 364 HLRLNRDIKVSSVVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGEMLQFTGIPY 423 HLRLNR+IKVSSVVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGE+LQFTGIPY Sbjct: 362 HLRLNREIKVSSVVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGELLQFTGIPY 421 Query: 424 FAPDFFRVARIRNPLKIKQLHKGLQQLGEEGAVQVFKPVTGSDLILGAVGVLQFEVVASR 483 FAPDFFR RIRNPLKIKQLHKGLQQLGEEGA+QVFKPV SDLILG VGVLQFEVVASR Sbjct: 422 FAPDFFRAVRIRNPLKIKQLHKGLQQLGEEGAIQVFKPVNSSDLILGGVGVLQFEVVASR 481 Query: 484 LLNEYGVDAVFEGTSISSARWISCDDKKKLADFEKSSAGANLAIDAAGNLAYLASSGVNL 543 LLNEYGVDAVFEGTSISSARWI+CDDKK LADFE+SSAG NL+ DAAGNLAYLASSGVNL Sbjct: 482 LLNEYGVDAVFEGTSISSARWITCDDKKMLADFERSSAGHNLSHDAAGNLAYLASSGVNL 541 Query: 544 RLTQERWPEITFHATREHAAKL 565 RLTQERWP +TFH TREHAAKL Sbjct: 542 RLTQERWPGVTFHETREHAAKL 563 >ref|ZP_04577775.1| peptide chain release factor 3 [Oxalobacter formigenes HOxBLS] gb|EEO28737.1| peptide chain release factor 3 [Oxalobacter formigenes HOxBLS] Length = 555 Score = 932 bits (2410), Expect = 0.0, Method: Composition-based stats. Identities = 458/550 (83%), Positives = 499/550 (90%), Gaps = 5/550 (0%) Query: 21 ADNASAPGAATKVSSD----LIAREVKRRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAG 76 ++N + AT S D IA EV RRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAG Sbjct: 7 SENPAVAKEATLESKDNLSKKIALEVARRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAG 66 Query: 77 TVKARKSGRHATSDWMEIEKQRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLT 136 TVKARKS RHATSDWM+IEKQRGISVASSVMQFEYRDH++NLLDTPGHQDFSEDTYRVLT Sbjct: 67 TVKARKSARHATSDWMDIEKQRGISVASSVMQFEYRDHIINLLDTPGHQDFSEDTYRVLT 126 Query: 137 AVDSALMVIDAAKGVEEQTIKLLNVCRMRNTPIITFMNKLDRETRDSLELLDELESVLKI 196 AVD+ALMVIDAA+GVE QTIKLL VCRMRNTPI+TFMNKLDRETRDSLELLDE+E+VLKI Sbjct: 127 AVDTALMVIDAARGVEAQTIKLLEVCRMRNTPILTFMNKLDRETRDSLELLDEVETVLKI 186 Query: 197 QCAPVTWPIGMGKNFRGVYHLLRDEIMLFKAGEERANGNVEIIKGIDNPKLAEMFPLEIE 256 +C P+TWPIGMGKNFRGVYHLL DE+MLF G E+A+ E+IKGIDNP+L EMFPLE+E Sbjct: 187 RCTPITWPIGMGKNFRGVYHLLNDEVMLFAPGNEKADQAFEVIKGIDNPRLTEMFPLEME 246 Query: 257 QLKMEVELVHGASHPFNLEDFLAGVQTPVFFGSAINNFGVREILDALLDWAPGPGGRDAT 316 QLKMEVELV GAS+PF LE+FLAG TPVFFGSAINNFGVRE+L+ALLDWA P GR+AT Sbjct: 247 QLKMEVELVKGASNPFVLEEFLAGTLTPVFFGSAINNFGVREVLNALLDWAQPPLGRNAT 306 Query: 317 VREVKPTEEPFSGFVFKIQANMDPAHRDRIAFLRVCSGRFERGMKLKHLRLNRDIKVSSV 376 VREV+PTE FSGFVFKIQANMDPAHRDRIAFLRVCSGRFERGM+LKHLRLNR+IKVSSV Sbjct: 307 VREVQPTEPAFSGFVFKIQANMDPAHRDRIAFLRVCSGRFERGMRLKHLRLNREIKVSSV 366 Query: 377 VTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGEMLQFTGIPYFAPDFFRVARIRN 436 VTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGE LQFTGIPYFAP+ FR RIRN Sbjct: 367 VTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGEALQFTGIPYFAPEIFRSVRIRN 426 Query: 437 PLKIKQLHKGLQQLGEEGAVQVFKPVTGSDLILGAVGVLQFEVVASRLLNEYGVDAVFEG 496 PLK+KQLHKGLQQLGEEGAVQVFKPV GSDLILGAVGVLQFEVVASRL+NEYGVDAVFEG Sbjct: 427 PLKVKQLHKGLQQLGEEGAVQVFKPVLGSDLILGAVGVLQFEVVASRLMNEYGVDAVFEG 486 Query: 497 TSISSARWISCDDKKKLADFEKSSAGANLAIDAAGNLAYLASSGVNLRLTQERWPEITFH 556 TSISSARWI+ +DK+ L+DFEKS A N+A DAAGNL YLA+SGVNLRLT+ERWP++ FH Sbjct: 487 TSISSARWITAEDKRILSDFEKSLA-HNVAYDAAGNLTYLATSGVNLRLTEERWPKLKFH 545 Query: 557 ATREHAAKLD 566 ATREH+ L+ Sbjct: 546 ATREHSVSLN 555