BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3406.p (539 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776312.1| methyl-accepting chemotaxis transducer trans... 513 e-143 ref|YP_003776311.1| methyl-accepting chemotaxis transducer trans... 433 e-119 ref|YP_003777404.1| methyl-accepting chemotaxis protein I [Herba... 392 e-106 ref|YP_440149.1| methyl-accepting chemotaxis protein [Burkholder... 341 2e-91 ref|ZP_02371594.1| methyl-accepting chemotaxis protein [Burkhold... 332 8e-89 >ref|YP_003776312.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] gb|ADJ64404.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 535 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 366/509 (71%), Positives = 428/509 (84%) Query: 1 MTIANKLRLLLLAVVLGLASLTGLSIYHSNRIADAASYSAVNTVPSLLVLGEAGEAVFRI 60 MTIA KL LL LAV+LGLASL+ L IY S +A AASYS+VNTVPSLL LG+AGEA F I Sbjct: 1 MTIAKKLHLLTLAVILGLASLSLLGIYQSREVAKAASYSSVNTVPSLLALGDAGEAAFGI 60 Query: 61 RVGIWRYAAATDAATRAKLEKSMNTNRDKVIAAFDRYEKEDLSDATDRQLLQADRDAFAD 120 RVGIW+YAAATD +R +LEK+M D+V+AAFDRY +ED+SD TDR+LL+ADR AFAD Sbjct: 61 RVGIWKYAAATDPVSRTRLEKAMAEQHDRVLAAFDRYAREDISDDTDRKLLEADRQAFAD 120 Query: 121 YEKSRQAVIALGAEGKTEEALHAVEHQVVPPGDKLINALAAHRRYNEQLGQQGVQTAQSS 180 YEK R V+ +GAE + EEAL A+E VVPPGDKLI ALA HR+Y EQLG+QGV+TA+ Sbjct: 121 YEKQRAVVLRIGAESRNEEALRAIEQLVVPPGDKLIAALAEHRKYKEQLGRQGVETAEGI 180 Query: 181 LRSAVVQAVLMSLAVCAVVAVVSLLISRTISTALGEAIMTARAIATGDLSTRIRRRANDE 240 L+S+ QA+L+SL V A+V SLLISR IS +L +AI A AIA GDLS++++ DE Sbjct: 181 LQSSTYQAILVSLLVAAIVGATSLLISRGISVSLDDAIRVANAIAHGDLSSKVKMTGKDE 240 Query: 241 VGQLMQAIQQMSDSLVRIVSNVRNSANTIATATAEIAAGNLDLSARTEAQAGSIEETASA 300 VGQL+ AI +M+ SLV IV NVR S I +A++EIA+GNLDLSARTEAQAGSIEETASA Sbjct: 241 VGQLLHAIGEMTASLVNIVGNVRQSVAAIESASSEIASGNLDLSARTEAQAGSIEETASA 300 Query: 301 MEQLTATVRQNADNAQQANVLATSASSVATEGGQAVQQVVQTMDEINASSLRIVDIISVI 360 MEQLTATV+QNADNA QA+ LA+SASSVA+EGG+ VQ+VV TMD IN+SSL+IVDIISVI Sbjct: 301 MEQLTATVKQNADNAHQADTLASSASSVASEGGKVVQEVVHTMDAINSSSLKIVDIISVI 360 Query: 361 DGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSAAAAHEIKELIDDSVGKV 420 DGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AA EIKELIDDSV KV Sbjct: 361 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIKELIDDSVEKV 420 Query: 421 ESGSRLVAQAGQTMQHVVDSVRRVTDIVADITAASAEQSDGIVQVNQAIGLMDQATQQNA 480 +SGSRLV QAG TM+ VV SV+RV+DIV DI+ AS EQSDGI QVNQAIG+MDQ TQQNA Sbjct: 421 QSGSRLVMQAGNTMEQVVTSVQRVSDIVRDISVASGEQSDGIAQVNQAIGMMDQTTQQNA 480 Query: 481 ALVEQAAAASQSMREQAAGLAEAVAVFKL 509 ALVE+AAAASQS+REQA GLA+AV+VF+L Sbjct: 481 ALVEEAAAASQSLREQAKGLAQAVSVFRL 509 >ref|YP_003776311.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] gb|ADJ64403.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 301/514 (58%), Positives = 381/514 (74%), Gaps = 2/514 (0%) Query: 1 MTIANKLRLLLLAVVLGLASLTGLSIYHSNRIADAASYSAVNTVPSLLVLGEAGEAVFRI 60 MTIA KL LL++AVVLG+ + +Y S+RIA +A YSA +T+PS+L L A +A++ I Sbjct: 31 MTIARKLYLLIVAVVLGVIMQAVVGLYQSHRIASSAGYSATDTIPSVLALNGATDAIYGI 90 Query: 61 RVGIWRYAAATDAATRAKLEKSMNTNRDKVIAAFDRYEKEDLSDATDRQLLQADRDAFAD 120 R+ I RY + R K +M K FD++E+ +SD TDR++L+ADR FA+ Sbjct: 91 RLNIARYV--IEPTAREKTVANMAALHQKAQDFFDQFERCCISDDTDRRMLEADRRFFAE 148 Query: 121 YEKSRQAVIALGAEGKTEEALHAVEHQVVPPGDKLINALAAHRRYNEQLGQQGVQTAQSS 180 YEK R A++ LG+ GK + A+E ++ P G +L+ L H+ YNEQLG+QG + A Sbjct: 149 YEKHRMAMVDLGSAGKEDALRVAMEEKMAPTGQRLMAVLNEHKNYNEQLGRQGAEAADEH 208 Query: 181 LRSAVVQAVLMSLAVCAVVAVVSLLISRTISTALGEAIMTARAIATGDLSTRIRRRANDE 240 L+ ++ + + V +V+ +SLL+ R I +L A A I GDLS++I R DE Sbjct: 209 LQLSIYLTIAAATLVIVMVSALSLLLVRNIRHSLHAATELADTIGRGDLSSQIVLRGRDE 268 Query: 241 VGQLMQAIQQMSDSLVRIVSNVRNSANTIATATAEIAAGNLDLSARTEAQAGSIEETASA 300 V QLM ++Q+M+ SLV+I+ V +SA TI TAT EIA+GNLDLS+RTEAQAGS+EET SA Sbjct: 269 VTQLMLSLQRMTGSLVQILGKVNDSAATIETATREIASGNLDLSSRTEAQAGSLEETVSA 328 Query: 301 MEQLTATVRQNADNAQQANVLATSASSVATEGGQAVQQVVQTMDEINASSLRIVDIISVI 360 M QLT TV+QNADNA+QA+ LA SAS VA + G+ V +V+ TM+ INASSL+IVDIISVI Sbjct: 329 MGQLTTTVKQNADNARQADELAQSASGVAGQAGKVVDEVILTMEAINASSLKIVDIISVI 388 Query: 361 DGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSAAAAHEIKELIDDSVGKV 420 DGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AA EIKELIDDSV KV Sbjct: 389 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIKELIDDSVNKV 448 Query: 421 ESGSRLVAQAGQTMQHVVDSVRRVTDIVADITAASAEQSDGIVQVNQAIGLMDQATQQNA 480 +SGSRLV QAG TM+ VV SVRRV+ IV DI+ AS EQSDGI QVNQAIG+MDQ TQQNA Sbjct: 449 QSGSRLVLQAGSTMEEVVTSVRRVSGIVRDISVASGEQSDGIAQVNQAIGMMDQTTQQNA 508 Query: 481 ALVEQAAAASQSMREQAAGLAEAVAVFKLAHEVQ 514 ALVE+AAAASQS+REQA GLA+AV+VF+L + Sbjct: 509 ALVEEAAAASQSLREQAKGLAQAVSVFRLERSAE 542 >ref|YP_003777404.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] gb|ADJ65496.1| methyl-accepting chemotaxis protein I, serine sensor receptor protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 285/539 (52%), Positives = 381/539 (70%), Gaps = 2/539 (0%) Query: 1 MTIANKLRLLLLAVVLGLASLTGLSIYHSNRIADAASYSAVNTVPSLLVLGEAGEAVFRI 60 ++I N+L +L+ AV++G L G ++ NR AS+++ N VPSLL L + + + Sbjct: 3 LSIVNRLYILIGAVIIGCVVLAGANMVKMNRTYADASFASENVVPSLLSLSTITQGINGM 62 Query: 61 RVGIWRYAAATDAATRAKLEKSMNTNRDKVIAAFDRYEKEDLSDATDRQLLQADRDAFAD 120 R+ WRY A T++ R +E S N+ + +V A +YE+E L+DATD++LL+A R ++ + Sbjct: 63 RIATWRYLALTESVDRGAIESSFNSAKKRVEDALQKYEQEQLADATDKELLRAVRVSYQE 122 Query: 121 YEKSRQAVIALGAEGKTEEALHAVEHQVVPPGDKLINALAAHRRYNEQLGQQGVQTAQSS 180 ++KS + L G+ EA A+ P D+L A+ R YNE++ Q G AQ + Sbjct: 123 FDKSLAEALKLANAGQWNEA-RALLANNQPVIDRLNKAMTELRAYNEKISQAGAHRAQET 181 Query: 181 LRSAVVQAVLMSLAVCAVVAVVSLLISRTISTALGEAIMTARAIATGDLSTRIRRRANDE 240 + +A + A+L+S AV AVV ++ LLI+R I+ +L EA+ A IA GDL+ I + DE Sbjct: 182 MAAARLHAILISAAVIAVVTLMGLLIARKIARSLAEAVELAETIAEGDLTREIDTSSTDE 241 Query: 241 VGQLMQAIQQMSDSLVRIVSNVRNSANTIATATAEIAAGNLDLSARTEAQAGSIEETASA 300 +G LM A+ +M+ +LV IV+ VR NT+A A+++IA GN+DLSARTE QA S+E+TA+A Sbjct: 242 IGHLMAAMAKMNRNLVTIVATVRTGVNTVAAASSQIATGNMDLSARTEQQASSLEQTAAA 301 Query: 301 MEQLTATVRQNADNAQQANVLATSASSVATEGGQAVQQVVQTMDEINASSLRIVDIISVI 360 E+LT+TV+QNA+NA QA+ LA++AS +A EGG+ V+QVV TM+EI +SSL I DIISVI Sbjct: 302 TEELTSTVKQNAENALQADQLASAASGIAAEGGEVVKQVVTTMEEIRSSSLNIADIISVI 361 Query: 361 DGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSAAAAHEIKELIDDSVGKV 420 DGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA+AA EIK+LIDDSV KV Sbjct: 362 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKQLIDDSVSKV 421 Query: 421 ESGSRLVAQAGQTMQHVVDSVRRVTDIVADITAASAEQSDGIVQVNQAIGLMDQATQQNA 480 E+GS+LV AG TMQ VV+SVRRVTD+V +I+AAS EQS GI QVNQAI MDQ+TQ+NA Sbjct: 422 ENGSQLVMSAGNTMQQVVESVRRVTDVVTEISAASREQSLGIEQVNQAISHMDQSTQENA 481 Query: 481 ALVEQAAAASQSMREQAAGLAEAVAVFKLAHEVQMLGEAGTGVAAAGALAGREVLALPA 539 ALVE+A AA+QS++EQA L AV VFKL E + E L GRE+ LPA Sbjct: 482 ALVEEATAAAQSLQEQARQLERAVNVFKLRQEAMDILEMEDH-RVTQTLPGRELSLLPA 539 >ref|YP_440149.1| methyl-accepting chemotaxis protein [Burkholderia thailandensis E264] gb|ABC35454.1| methyl-accepting chemotaxis protein [Burkholderia thailandensis E264] Length = 685 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 261/509 (51%), Positives = 348/509 (68%), Gaps = 1/509 (0%) Query: 1 MTIANKLRLLLLAVVLGLASLTGLSIYHSNRIADAASYSAVNTVPSLLVLGEAGEAVFRI 60 M I +L +L+LA ++ L ++TG IY S R+ AASYS VNTVPS +VL +A A + Sbjct: 91 MKIGARLIVLILAALVALCAITGFGIYESRRVYTAASYSTVNTVPSFVVLDDAQHAFDSM 150 Query: 61 RVGIWRYAAATDAATRAKLEKSMNTNRDKVIAAFDRYEKEDLSDATDRQLLQADRDAFAD 120 + + ++ +T+A LE+ + R V + F +YE+ LS D+ LL ADR + Sbjct: 151 LLLVNQHVFSTNADQTKDLEQKIAQERRNVDSQFSKYEQL-LSSDKDKDLLAADRALMSQ 209 Query: 121 YEKSRQAVIALGAEGKTEEALHAVEHQVVPPGDKLINALAAHRRYNEQLGQQGVQTAQSS 180 + R V+AL +GK +EA + ++ +L ALAAHR +N LG+ G A+ Sbjct: 210 LDAVRDNVLALSRDGKKQEAGELMGTRMTELAQQLNTALAAHRAFNVDLGRAGSNEAKDI 269 Query: 181 LRSAVVQAVLMSLAVCAVVAVVSLLISRTISTALGEAIMTARAIATGDLSTRIRRRANDE 240 + AV V + V AVV + +LISR+I+ +G+A+ AR +A GDL+T I + DE Sbjct: 270 IDRAVTLEVSAAAVVLAVVLWLGVLISRSITKPMGDAVRFARTVADGDLTTHIDATSKDE 329 Query: 241 VGQLMQAIQQMSDSLVRIVSNVRNSANTIATATAEIAAGNLDLSARTEAQAGSIEETASA 300 GQL++A+ M+DSL RIV VR ++ +ATA+ +IAAGNLDLS+RTE QA S++ETAS+ Sbjct: 330 TGQLLKALGDMNDSLKRIVERVRMGSDAVATASGQIAAGNLDLSSRTEEQAASLQETASS 389 Query: 301 MEQLTATVRQNADNAQQANVLATSASSVATEGGQAVQQVVQTMDEINASSLRIVDIISVI 360 ME+LT+TVRQNA+NAQQA+ LA++AS VA G V QVV TM++I+ S +I +II +I Sbjct: 390 MEELTSTVRQNAENAQQASGLASNASDVALRGSTVVGQVVDTMNDISERSSKIAEIIGII 449 Query: 361 DGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSAAAAHEIKELIDDSVGKV 420 +GIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR LAQRS++AA EIKELI SV K+ Sbjct: 450 EGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRGLAQRSSSAAKEIKELISASVQKI 509 Query: 421 ESGSRLVAQAGQTMQHVVDSVRRVTDIVADITAASAEQSDGIVQVNQAIGLMDQATQQNA 480 GS L +AG+TM V +V RVTDI+ +I AASAEQS GI QVN AI MD+ TQQNA Sbjct: 510 RDGSALAGEAGKTMTEVTQAVARVTDIMGEIAAASAEQSRGIEQVNLAITQMDEVTQQNA 569 Query: 481 ALVEQAAAASQSMREQAAGLAEAVAVFKL 509 ALVE+AAAAS S+ EQ L +AV+ F+L Sbjct: 570 ALVEEAAAASHSLEEQGRELKQAVSFFRL 598 >ref|ZP_02371594.1| methyl-accepting chemotaxis protein [Burkholderia thailandensis TXDOH] Length = 602 Score = 332 bits (852), Expect = 8e-89, Method: Composition-based stats. Identities = 261/509 (51%), Positives = 349/509 (68%), Gaps = 1/509 (0%) Query: 1 MTIANKLRLLLLAVVLGLASLTGLSIYHSNRIADAASYSAVNTVPSLLVLGEAGEAVFRI 60 M I +L +L+LA ++ L ++TG IY S R+ AASYS VNTVPS +VL +A A + Sbjct: 7 MKIGARLIVLILAALVALCAITGFGIYESRRVYTAASYSTVNTVPSFVVLDDAQHAFDSM 66 Query: 61 RVGIWRYAAATDAATRAKLEKSMNTNRDKVIAAFDRYEKEDLSDATDRQLLQADRDAFAD 120 + + ++ +T+A LE+ + R V + F +YE+ LS D+ LL ADR + Sbjct: 67 LLLVNQHVFSTNADQTKDLEQKIAQERRNVDSQFSKYEQL-LSSDKDKDLLAADRALMSQ 125 Query: 121 YEKSRQAVIALGAEGKTEEALHAVEHQVVPPGDKLINALAAHRRYNEQLGQQGVQTAQSS 180 ++ R V+AL +GK +EA + ++ +L ALAAHR +N LG+ G A+ Sbjct: 126 FDAVRDNVLALSRDGKKQEAGELMGTRMTELAQQLNTALAAHRAFNVDLGRAGSNEAKDI 185 Query: 181 LRSAVVQAVLMSLAVCAVVAVVSLLISRTISTALGEAIMTARAIATGDLSTRIRRRANDE 240 + AV V + V AVV + +LISR+I+ +G+A+ AR +A GDL+T I + DE Sbjct: 186 IDRAVTLEVSAAAVVLAVVLWLGVLISRSITKPMGDAVRFARTVADGDLTTHIDATSKDE 245 Query: 241 VGQLMQAIQQMSDSLVRIVSNVRNSANTIATATAEIAAGNLDLSARTEAQAGSIEETASA 300 GQL++A+ M+DSL RIV VR ++ +ATA+ +IAAGNLDLS+RTE QA S++ETAS+ Sbjct: 246 TGQLLKALGDMNDSLKRIVERVRMGSDAVATASGQIAAGNLDLSSRTEEQAASLQETASS 305 Query: 301 MEQLTATVRQNADNAQQANVLATSASSVATEGGQAVQQVVQTMDEINASSLRIVDIISVI 360 ME+LT+TVRQNA+NAQQA+ LA++AS VA G V QVV TM++I+ S +I +II +I Sbjct: 306 MEELTSTVRQNAENAQQASGLASNASDVALRGSTVVGQVVDTMNDISERSSKIAEIIGII 365 Query: 361 DGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSAAAAHEIKELIDDSVGKV 420 +GIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR LAQRS++AA EIKELI SV K+ Sbjct: 366 EGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRGLAQRSSSAAKEIKELISASVQKI 425 Query: 421 ESGSRLVAQAGQTMQHVVDSVRRVTDIVADITAASAEQSDGIVQVNQAIGLMDQATQQNA 480 GS L +AG+TM V +V RVTDI+ +I AASAEQS GI QVN AI MD+ TQQNA Sbjct: 426 RDGSALAGEAGKTMTEVTQAVARVTDIMGEIAAASAEQSRGIEQVNLAITQMDEVTQQNA 485 Query: 481 ALVEQAAAASQSMREQAAGLAEAVAVFKL 509 ALVE+AAAAS S+ EQ L +AV+ F+L Sbjct: 486 ALVEEAAAASHSLEEQGRELKQAVSFFRL 514