BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3405.p (546 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776311.1| methyl-accepting chemotaxis transducer trans... 504 e-140 ref|YP_003776312.1| methyl-accepting chemotaxis transducer trans... 441 e-121 ref|YP_003777404.1| methyl-accepting chemotaxis protein I [Herba... 374 e-101 ref|YP_337164.1| methyl-accepting chemotaxis protein [Burkholder... 305 2e-80 ref|ZP_04893785.1| methyl-accepting chemotaxis protein [Burkhold... 302 9e-80 >ref|YP_003776311.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] gb|ADJ64403.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 327/516 (63%), Positives = 395/516 (76%) Query: 4 GEPNMTIAKKLYLLIIAVIAGLCALAALSIYQSYRVSAAAGYSTHNTVPSILALDEAIES 63 G +MTIA+KLYLLI+AV+ G+ A + +YQS+R++++AGYS +T+PS+LAL+ A ++ Sbjct: 27 GVGDMTIARKLYLLIVAVVLGVIMQAVVGLYQSHRIASSAGYSATDTIPSVLALNGATDA 86 Query: 64 VYAIRLNVARYFIEPTTRDKIFPVIEALHDKVQAAFLKFEKECISDATDAKMLEQDRAAF 123 +Y IRLN+ARY IEPT R+K + ALH K Q F +FE+ CISD TD +MLE DR F Sbjct: 87 IYGIRLNIARYVIEPTAREKTVANMAALHQKAQDFFDQFERCCISDDTDRRMLEADRRFF 146 Query: 124 ADYEKARQQTLAFVDAGQANELQRAREELLVPAGNRLMKALIEHKQYNAQLGREGMENAA 183 A+YEK R + AG+ + L+ A EE + P G RLM L EHK YN QLGR+G E A Sbjct: 147 AEYEKHRMAMVDLGSAGKEDALRVAMEEKMAPTGQRLMAVLNEHKNYNEQLGRQGAEAAD 206 Query: 184 SILESSIVIIVGVSLLIGTLVVGLSLLLVRMIATSLRHATHVADAISRYDLTSKIEHAAR 243 L+ SI + + + L+ +V LSLLLVR I SL AT +AD I R DL+S+I R Sbjct: 207 EHLQLSIYLTIAAATLVIVMVSALSLLLVRNIRHSLHAATELADTIGRGDLSSQIVLRGR 266 Query: 244 DEIGHLMQALGRMNDSLRKVMGGVGDSTGTIQVAAREIATGNLDLSSRTESQAGSLEETA 303 DE+ LM +L RM SL +++G V DS TI+ A REIA+GNLDLSSRTE+QAGSLEET Sbjct: 267 DEVTQLMLSLQRMTGSLVQILGKVNDSAATIETATREIASGNLDLSSRTEAQAGSLEETV 326 Query: 304 TAMEQLTATVRQNAENARQASELAISASAVAAQGGKVVDEVVLTMEAINASSLKIVDIIS 363 +AM QLT TV+QNA+NARQA ELA SAS VA Q GKVVDEV+LTMEAINASSLKIVDIIS Sbjct: 327 SAMGQLTTTVKQNADNARQADELAQSASGVAGQAGKVVDEVILTMEAINASSLKIVDIIS 386 Query: 364 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKELIQDSVD 423 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AA+EIKELI DSV+ Sbjct: 387 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIKELIDDSVN 446 Query: 424 KIGAGGRLVTEAGSTMAQVVTSVGRVTDIVSEISAASTEQSQGLEQINQAIGAMDEVTQQ 483 K+ +G RLV +AGSTM +VVTSV RV+ IV +IS AS EQS G+ Q+NQAIG MD+ TQQ Sbjct: 447 KVQSGSRLVLQAGSTMEEVVTSVRRVSGIVRDISVASGEQSDGIAQVNQAIGMMDQTTQQ 506 Query: 484 NAALVEQAAAASQSLQEQAVQLAGAVGVFRLNRQAQ 519 NAALVE+AAAASQSL+EQA LA AV VFRL R A+ Sbjct: 507 NAALVEEAAAASQSLREQAKGLAQAVSVFRLERSAE 542 >ref|YP_003776312.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] gb|ADJ64404.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 535 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 313/511 (61%), Positives = 391/511 (76%), Gaps = 2/511 (0%) Query: 8 MTIAKKLYLLIIAVIAGLCALAALSIYQSYRVSAAAGYSTHNTVPSILALDEAIESVYAI 67 MTIAKKL+LL +AVI GL +L+ L IYQS V+ AA YS+ NTVPS+LAL +A E+ + I Sbjct: 1 MTIAKKLHLLTLAVILGLASLSLLGIYQSREVAKAASYSSVNTVPSLLALGDAGEAAFGI 60 Query: 68 RLNVARYF--IEPTTRDKIFPVIEALHDKVQAAFLKFEKECISDATDAKMLEQDRAAFAD 125 R+ + +Y +P +R ++ + HD+V AAF ++ +E ISD TD K+LE DR AFAD Sbjct: 61 RVGIWKYAAATDPVSRTRLEKAMAEQHDRVLAAFDRYAREDISDDTDRKLLEADRQAFAD 120 Query: 126 YEKARQQTLAFVDAGQANELQRAREELLVPAGNRLMKALIEHKQYNAQLGREGMENAASI 185 YEK R L + E RA E+L+VP G++L+ AL EH++Y QLGR+G+E A I Sbjct: 121 YEKQRAVVLRIGAESRNEEALRAIEQLVVPPGDKLIAALAEHRKYKEQLGRQGVETAEGI 180 Query: 186 LESSIVIIVGVSLLIGTLVVGLSLLLVRMIATSLRHATHVADAISRYDLTSKIEHAARDE 245 L+SS + VSLL+ +V SLL+ R I+ SL A VA+AI+ DL+SK++ +DE Sbjct: 181 LQSSTYQAILVSLLVAAIVGATSLLISRGISVSLDDAIRVANAIAHGDLSSKVKMTGKDE 240 Query: 246 IGHLMQALGRMNDSLRKVMGGVGDSTGTIQVAAREIATGNLDLSSRTESQAGSLEETATA 305 +G L+ A+G M SL ++G V S I+ A+ EIA+GNLDLS+RTE+QAGS+EETA+A Sbjct: 241 VGQLLHAIGEMTASLVNIVGNVRQSVAAIESASSEIASGNLDLSARTEAQAGSIEETASA 300 Query: 306 MEQLTATVRQNAENARQASELAISASAVAAQGGKVVDEVVLTMEAINASSLKIVDIISVI 365 MEQLTATV+QNA+NA QA LA SAS+VA++GGKVV EVV TM+AIN+SSLKIVDIISVI Sbjct: 301 MEQLTATVKQNADNAHQADTLASSASSVASEGGKVVQEVVHTMDAINSSSLKIVDIISVI 360 Query: 366 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKELIQDSVDKI 425 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AA+EIKELI DSV+K+ Sbjct: 361 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIKELIDDSVEKV 420 Query: 426 GAGGRLVTEAGSTMAQVVTSVGRVTDIVSEISAASTEQSQGLEQINQAIGAMDEVTQQNA 485 +G RLV +AG+TM QVVTSV RV+DIV +IS AS EQS G+ Q+NQAIG MD+ TQQNA Sbjct: 421 QSGSRLVMQAGNTMEQVVTSVQRVSDIVRDISVASGEQSDGIAQVNQAIGMMDQTTQQNA 480 Query: 486 ALVEQAAAASQSLQEQAVQLAGAVGVFRLNR 516 ALVE+AAAASQSL+EQA LA AV VFRL R Sbjct: 481 ALVEEAAAASQSLREQAKGLAQAVSVFRLER 511 >ref|YP_003777404.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] gb|ADJ65496.1| methyl-accepting chemotaxis protein I, serine sensor receptor protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 261/518 (50%), Positives = 355/518 (68%), Gaps = 3/518 (0%) Query: 8 MTIAKKLYLLIIAVIAGLCALAALSIYQSYRVSAAAGYSTHNTVPSILALDEAIESVYAI 67 ++I +LY+LI AVI G LA ++ + R A A +++ N VPS+L+L + + + Sbjct: 3 LSIVNRLYILIGAVIIGCVVLAGANMVKMNRTYADASFASENVVPSLLSLSTITQGINGM 62 Query: 68 RLNVARYF--IEPTTRDKIFPVIEALHDKVQAAFLKFEKECISDATDAKMLEQDRAAFAD 125 R+ RY E R I + +V+ A K+E+E ++DATD ++L R ++ + Sbjct: 63 RIATWRYLALTESVDRGAIESSFNSAKKRVEDALQKYEQEQLADATDKELLRAVRVSYQE 122 Query: 126 YEKARQQTLAFVDAGQANELQRAREELLVPAGNRLMKALIEHKQYNAQLGREGMENAASI 185 ++K+ + L +AGQ NE RA P +RL KA+ E + YN ++ + G A Sbjct: 123 FDKSLAEALKLANAGQWNE-ARALLANNQPVIDRLNKAMTELRAYNEKISQAGAHRAQET 181 Query: 186 LESSIVIIVGVSLLIGTLVVGLSLLLVRMIATSLRHATHVADAISRYDLTSKIEHAARDE 245 + ++ + + +S + +V + LL+ R IA SL A +A+ I+ DLT +I+ ++ DE Sbjct: 182 MAAARLHAILISAAVIAVVTLMGLLIARKIARSLAEAVELAETIAEGDLTREIDTSSTDE 241 Query: 246 IGHLMQALGRMNDSLRKVMGGVGDSTGTIQVAAREIATGNLDLSSRTESQAGSLEETATA 305 IGHLM A+ +MN +L ++ V T+ A+ +IATGN+DLS+RTE QA SLE+TA A Sbjct: 242 IGHLMAAMAKMNRNLVTIVATVRTGVNTVAAASSQIATGNMDLSARTEQQASSLEQTAAA 301 Query: 306 MEQLTATVRQNAENARQASELAISASAVAAQGGKVVDEVVLTMEAINASSLKIVDIISVI 365 E+LT+TV+QNAENA QA +LA +AS +AA+GG+VV +VV TME I +SSL I DIISVI Sbjct: 302 TEELTSTVKQNAENALQADQLASAASGIAAEGGEVVKQVVTTMEEIRSSSLNIADIISVI 361 Query: 366 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKELIQDSVDKI 425 DGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK+LI DSV K+ Sbjct: 362 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKQLIDDSVSKV 421 Query: 426 GAGGRLVTEAGSTMAQVVTSVGRVTDIVSEISAASTEQSQGLEQINQAIGAMDEVTQQNA 485 G +LV AG+TM QVV SV RVTD+V+EISAAS EQS G+EQ+NQAI MD+ TQ+NA Sbjct: 422 ENGSQLVMSAGNTMQQVVESVRRVTDVVTEISAASREQSLGIEQVNQAISHMDQSTQENA 481 Query: 486 ALVEQAAAASQSLQEQAVQLAGAVGVFRLNRQAQWIAE 523 ALVE+A AA+QSLQEQA QL AV VF+L ++A I E Sbjct: 482 ALVEEATAAAQSLQEQARQLERAVNVFKLRQEAMDILE 519 >ref|YP_337164.1| methyl-accepting chemotaxis protein [Burkholderia pseudomallei 1710b] gb|ABA52622.1| methyl-accepting chemotaxis protein [Burkholderia pseudomallei 1710b] Length = 634 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 239/488 (48%), Positives = 312/488 (63%), Gaps = 3/488 (0%) Query: 30 ALSIYQSYRVSAAAGYSTHNTVPSILALDEAIESVYAIRLNVARYFIEPTTRDK--IFPV 87 IY+S RV AA YST NTVPS + LD+A + ++ L V + T + P Sbjct: 48 GFGIYESRRVYTAASYSTVNTVPSFVVLDDAQRAFDSMLLLVNQQVFSTTADQAKALEPR 107 Query: 88 IEALHDKVQAAFLKFEKECISDATDAKMLEQDRAAFADYEKARQQTLAFVDAGQANELQR 147 I +V A F K+E +S+ D +L DRA + + R+ LA G+ E Sbjct: 108 IAQARREVDAQFAKYET-LLSNDKDKALLAADRARVSQLDAVRENVLALSRDGRKQEAGE 166 Query: 148 AREELLVPAGNRLMKALIEHKQYNAQLGREGMENAASILESSIVIIVGVSLLIGTLVVGL 207 + + AL H+ +N LG+ G A I++ ++ + + ++ LV+ L Sbjct: 167 LMGTRMTELAQQTNAALAAHRAFNVDLGQAGSNEAKDIIDRAVTLEASAAAVVLVLVLWL 226 Query: 208 SLLLVRMIATSLRHATHVADAISRYDLTSKIEHAARDEIGHLMQALGRMNDSLRKVMGGV 267 +L+ R I + +A A ++ DLT+ I A++DE G L++ALG MNDSL++V+ V Sbjct: 227 GVLISRSITKPMGNAVKFARTVADGDLTTHIGAASKDETGQLLKALGDMNDSLKRVVERV 286 Query: 268 GDSTGTIQVAAREIATGNLDLSSRTESQAGSLEETATAMEQLTATVRQNAENARQASELA 327 + + A+ +IA GNLDLSSRTE QA SL+ETA +ME+LT+TVRQNAENA+QAS LA Sbjct: 287 RMGSDAVATASGQIAAGNLDLSSRTEEQAASLQETAASMEELTSTVRQNAENAQQASGLA 346 Query: 328 ISASAVAAQGGKVVDEVVLTMEAINASSLKIVDIISVIDGIAFQTNILALNAAVEAARAG 387 +AS VA +G VVD VV TM I+ S KI +II +I+GIAFQTNILALNAAVEAARAG Sbjct: 347 SNASDVALRGSSVVDRVVDTMNDISERSSKIAEIIGIIEGIAFQTNILALNAAVEAARAG 406 Query: 388 EQGRGFAVVASEVRSLAQRSATAAKEIKELIQDSVDKIGAGGRLVTEAGSTMAQVVTSVG 447 EQGRGFAVVA EVR LAQRS++AAKEIKELI SV KI G L EAG TM +V +V Sbjct: 407 EQGRGFAVVAGEVRGLAQRSSSAAKEIKELISASVQKIRDGSALAGEAGRTMTEVTQAVA 466 Query: 448 RVTDIVSEISAASTEQSQGLEQINQAIGAMDEVTQQNAALVEQAAAASQSLQEQAVQLAG 507 RVTDI+ EI+AAS EQS+G+EQ+N AI MDEVTQQNAALVE+AAAAS SL+EQ +L Sbjct: 467 RVTDIMGEIAAASAEQSRGIEQVNLAITQMDEVTQQNAALVEEAAAASHSLEEQGHELKQ 526 Query: 508 AVGVFRLN 515 AV FR + Sbjct: 527 AVAFFRFD 534 >ref|ZP_04893785.1| methyl-accepting chemotaxis protein [Burkholderia pseudomallei Pasteur 52237] ref|ZP_04905261.1| methyl-accepting chemotaxis protein [Burkholderia pseudomallei S13] ref|ZP_04954645.1| methyl-accepting chemotaxis protein [Burkholderia pseudomallei 1710a] gb|EDO90623.1| methyl-accepting chemotaxis protein [Burkholderia pseudomallei Pasteur 52237] gb|EDS88409.1| methyl-accepting chemotaxis protein [Burkholderia pseudomallei S13] gb|EET04167.1| methyl-accepting chemotaxis protein [Burkholderia pseudomallei 1710a] Length = 615 Score = 302 bits (774), Expect = 9e-80, Method: Composition-based stats. Identities = 239/488 (48%), Positives = 312/488 (63%), Gaps = 3/488 (0%) Query: 30 ALSIYQSYRVSAAAGYSTHNTVPSILALDEAIESVYAIRLNVARYFIEPTTRDK--IFPV 87 IY+S RV AA YST NTVPS + LD+A + ++ L V + T + P Sbjct: 29 GFGIYESRRVYTAASYSTVNTVPSFVVLDDAQRAFDSMLLLVNQQVFSTTADQAKALEPR 88 Query: 88 IEALHDKVQAAFLKFEKECISDATDAKMLEQDRAAFADYEKARQQTLAFVDAGQANELQR 147 I +V A F K+E +S+ D +L DRA + + R+ LA G+ E Sbjct: 89 IAQARREVDAQFAKYET-LLSNDKDKALLAADRARVSQLDAVRENVLALSRDGRKQEAGE 147 Query: 148 AREELLVPAGNRLMKALIEHKQYNAQLGREGMENAASILESSIVIIVGVSLLIGTLVVGL 207 + + AL H+ +N LG+ G A I++ ++ + + ++ LV+ L Sbjct: 148 LMGTRMTELAQQTNAALAAHRAFNVDLGQAGSNEAKDIIDRAVTLEASAAAVVLVLVLWL 207 Query: 208 SLLLVRMIATSLRHATHVADAISRYDLTSKIEHAARDEIGHLMQALGRMNDSLRKVMGGV 267 +L+ R I + +A A ++ DLT+ I A++DE G L++ALG MNDSL++V+ V Sbjct: 208 GVLISRSITKPMGNAVKFARTVADGDLTTHIGAASKDETGQLLKALGDMNDSLKRVVERV 267 Query: 268 GDSTGTIQVAAREIATGNLDLSSRTESQAGSLEETATAMEQLTATVRQNAENARQASELA 327 + + A+ +IA GNLDLSSRTE QA SL+ETA +ME+LT+TVRQNAENA+QAS LA Sbjct: 268 RMGSDAVATASGQIAAGNLDLSSRTEEQAASLQETAASMEELTSTVRQNAENAQQASGLA 327 Query: 328 ISASAVAAQGGKVVDEVVLTMEAINASSLKIVDIISVIDGIAFQTNILALNAAVEAARAG 387 +AS VA +G VVD VV TM I+ S KI +II +I+GIAFQTNILALNAAVEAARAG Sbjct: 328 SNASDVALRGSSVVDRVVDTMNDISERSSKIAEIIGIIEGIAFQTNILALNAAVEAARAG 387 Query: 388 EQGRGFAVVASEVRSLAQRSATAAKEIKELIQDSVDKIGAGGRLVTEAGSTMAQVVTSVG 447 EQGRGFAVVA EVR LAQRS++AAKEIKELI SV KI G L EAG TM +V +V Sbjct: 388 EQGRGFAVVAGEVRGLAQRSSSAAKEIKELISASVQKIRDGSALAGEAGRTMTEVTQAVA 447 Query: 448 RVTDIVSEISAASTEQSQGLEQINQAIGAMDEVTQQNAALVEQAAAASQSLQEQAVQLAG 507 RVTDI+ EI+AAS EQS+G+EQ+N AI MDEVTQQNAALVE+AAAAS SL+EQ +L Sbjct: 448 RVTDIMGEIAAASAEQSRGIEQVNLAITQMDEVTQQNAALVEEAAAASHSLEEQGHELKQ 507 Query: 508 AVGVFRLN 515 AV FR + Sbjct: 508 AVAFFRFD 515