BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3404.p (168 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776309.1| signal peptide protein [Herbaspirillum serop... 291 2e-77 ref|YP_984240.1| calcium/calmodulin dependent protein kinase II ... 206 8e-52 ref|YP_004231937.1| Calcium/calmodulin dependent protein kinase ... 199 1e-49 ref|YP_296343.1| hypothetical protein Reut_A2135 [Ralstonia eutr... 192 2e-47 ref|YP_004685904.1| hypothetical protein CNE_1c20860 [Cupriavidu... 185 2e-45 >ref|YP_003776309.1| signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ64401.1| signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 165 Score = 291 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 141/164 (85%), Positives = 146/164 (89%) Query: 1 MKTVLYASALALILTGCASTPSSKPAPDLPFAGPGNGMVCKSTTGKEIAALFDRWNASLQ 60 MK VL ASALALILTGCAS A D+ GPG +VCK TTGKEIAALFDRWN SLQ Sbjct: 1 MKIVLSASALALILTGCASPQPGNGAGDISVLGPGETLVCKRTTGKEIAALFDRWNQSLQ 60 Query: 61 TLDPEAVAENYAPRALLLPTVSNKPRFTNEERIDYFEHFLHNKPVGKIDQRWLWIGCNTA 120 TL+PEAVA NYAPR++LLPTVSNKPRFTNEERIDYFEHFLHNKPVGKIDQRWL IGCNTA Sbjct: 61 TLEPEAVAANYAPRSILLPTVSNKPRFTNEERIDYFEHFLHNKPVGKIDQRWLSIGCNTA 120 Query: 121 IDAGLYSFTFGTTGQVVHARYTFTYEWDGKQWLISSHHSSAMPE 164 IDAGLYSFTFGTTGQVVHARYTFTYEWDGKQWLISSHHSSAMPE Sbjct: 121 IDAGLYSFTFGTTGQVVHARYTFTYEWDGKQWLISSHHSSAMPE 164 >ref|YP_984240.1| calcium/calmodulin dependent protein kinase II association-domain-containing protein [Polaromonas naphthalenivorans CJ2] gb|ABM39319.1| Calcium/calmodulin dependent protein kinase II, association-domain protein [Polaromonas naphthalenivorans CJ2] Length = 161 Score = 206 bits (524), Expect = 8e-52, Method: Composition-based stats. Identities = 99/158 (62%), Positives = 117/158 (74%), Gaps = 6/158 (3%) Query: 7 ASALALILTGCASTPSSKPAPDLPFAGPGNGMVCKSTTGKEIAALFDRWNASLQTLDPEA 66 ++ LA +L+GCAS PS P VC+++ +EIAALFDRWN SLQT DP Sbjct: 8 SAVLAAVLSGCASAPSGSET------APARTEVCRASNEQEIAALFDRWNRSLQTGDPHQ 61 Query: 67 VAENYAPRALLLPTVSNKPRFTNEERIDYFEHFLHNKPVGKIDQRWLWIGCNTAIDAGLY 126 V NYA R++LLPTVSN+PR T E+ DYF HFL NKPVGKID R + +GCNTA+DAGLY Sbjct: 62 VVANYADRSILLPTVSNQPRLTAAEKEDYFHHFLENKPVGKIDSRTIEMGCNTAVDAGLY 121 Query: 127 SFTFGTTGQVVHARYTFTYEWDGKQWLISSHHSSAMPE 164 +FTFG TG V ARYT+TY WDGKQWLI+SHHSSAMPE Sbjct: 122 TFTFGATGAQVKARYTYTYRWDGKQWLITSHHSSAMPE 159 >ref|YP_004231937.1| Calcium/calmodulin dependent protein kinase II association-domain-containing protein [Burkholderia sp. CCGE1001] gb|ADX58877.1| Calcium/calmodulin dependent protein kinase II association-domain protein [Burkholderia sp. CCGE1001] Length = 160 Score = 199 bits (505), Expect = 1e-49, Method: Composition-based stats. Identities = 96/160 (60%), Positives = 117/160 (73%), Gaps = 5/160 (3%) Query: 5 LYASALALILTGCASTPSSKPAPDLPFAGPGNGMVCKSTTGKEIAALFDRWNASLQTLDP 64 L +ALAL GCA+ S + LP G CK+TT +EIAALFDRWN SLQT DP Sbjct: 4 LSVAALALAFAGCAAEQSVSNSASLP-----AGSSCKATTNEEIAALFDRWNQSLQTGDP 58 Query: 65 EAVAENYAPRALLLPTVSNKPRFTNEERIDYFEHFLHNKPVGKIDQRWLWIGCNTAIDAG 124 V NYA R++LL TVSN+PR T E+ DYF HFL ++P GKID R++ +GCN+A+DAG Sbjct: 59 HKVVANYAERSILLATVSNQPRLTVAEKEDYFHHFLQDRPSGKIDFRFIELGCNSAVDAG 118 Query: 125 LYSFTFGTTGQVVHARYTFTYEWDGKQWLISSHHSSAMPE 164 LY+FTF +G VV ARYT+TY WDG+QWLI+SHHSSAMPE Sbjct: 119 LYTFTFARSGAVVKARYTYTYRWDGRQWLITSHHSSAMPE 158 >ref|YP_296343.1| hypothetical protein Reut_A2135 [Ralstonia eutropha JMP134] gb|AAZ61499.1| Conserved hypothetical protein 2246 [Ralstonia eutropha JMP134] Length = 155 Score = 192 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 89/127 (70%), Positives = 103/127 (81%) Query: 40 CKSTTGKEIAALFDRWNASLQTLDPEAVAENYAPRALLLPTVSNKPRFTNEERIDYFEHF 99 CK+T+ +EI+ALFDRWN SLQT DP VA NYA R++LLPTVSNKPR T ER DYF HF Sbjct: 29 CKATSEQEISALFDRWNRSLQTGDPRKVAANYAERSILLPTVSNKPRVTVAEREDYFHHF 88 Query: 100 LHNKPVGKIDQRWLWIGCNTAIDAGLYSFTFGTTGQVVHARYTFTYEWDGKQWLISSHHS 159 L ++P GKID R + IGCN+A+DAGLY+FTF TG VV ARYT+TY WDG QWLI+SHHS Sbjct: 89 LQDRPSGKIDFRTIEIGCNSAVDAGLYTFTFARTGAVVKARYTYTYRWDGTQWLITSHHS 148 Query: 160 SAMPEVM 166 SAMPE M Sbjct: 149 SAMPEKM 155 >ref|YP_004685904.1| hypothetical protein CNE_1c20860 [Cupriavidus necator N-1] gb|AEI77423.1| hypothetical protein CNE_1c20860 [Cupriavidus necator N-1] Length = 143 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 86/125 (68%), Positives = 100/125 (80%) Query: 40 CKSTTGKEIAALFDRWNASLQTLDPEAVAENYAPRALLLPTVSNKPRFTNEERIDYFEHF 99 CK T+ +EIAALFDRWN SLQT DP V NYA R++LLPTVSNKPR T E+ DYF HF Sbjct: 17 CKMTSEQEIAALFDRWNRSLQTGDPHKVVANYAERSILLPTVSNKPRLTVAEKEDYFHHF 76 Query: 100 LHNKPVGKIDQRWLWIGCNTAIDAGLYSFTFGTTGQVVHARYTFTYEWDGKQWLISSHHS 159 L N P GKID R + +GCN+A+D+GLY+FTF TG VV AR+T+TY WDGKQWLI+SHHS Sbjct: 77 LQNGPSGKIDFRTIELGCNSAVDSGLYTFTFARTGAVVKARFTYTYHWDGKQWLITSHHS 136 Query: 160 SAMPE 164 SAMPE Sbjct: 137 SAMPE 141