BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3403.p (213 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777404.1| methyl-accepting chemotaxis protein I [Herba... 100 2e-19 ref|YP_003776312.1| methyl-accepting chemotaxis transducer trans... 97 2e-18 ref|YP_003776311.1| methyl-accepting chemotaxis transducer trans... 87 2e-15 ref|XP_002534650.1| conserved hypothetical protein [Ricinus comm... 86 3e-15 ref|YP_003050590.1| methyl-accepting chemotaxis sensory transduc... 86 4e-15 >ref|YP_003777404.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] gb|ADJ65496.1| methyl-accepting chemotaxis protein I, serine sensor receptor protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 69/212 (32%), Positives = 119/212 (56%), Gaps = 4/212 (1%) Query: 1 MTVAKKLYALAAIAILGTLLIVGVQTYHLHRVDSAASYASANTVPSILELDSVIDGAYAM 60 +++ +LY L I+G +++ G ++R + AS+AS N VPS+L L ++ G M Sbjct: 3 LSIVNRLYILIGAVIIGCVVLAGANMVKMNRTYADASFASENVVPSLLSLSTITQGINGM 62 Query: 61 RISIWKYLANPTPEQRQETEKVINASSSQIARALDTYEKEDISDATDAQMLKDIRQHIAT 120 RI+ W+YLA R E N++ ++ AL YE+E ++DATD ++L+ +R Sbjct: 63 RIATWRYLALTESVDRGAIESSFNSAKKRVEDALQKYEQEQLADATDKELLRAVRVSYQE 122 Query: 121 YDASLAKVMILAQKDAV-AARNAMAADQAIVDTMMSALDKQKKYNQKLGKAAAQTATATK 179 +D SLA+ + LA AR +A +Q ++D + A+ + + YN+K+ +A A A T Sbjct: 123 FDKSLAEALKLANAGQWNEARALLANNQPVIDRLNKAMTELRAYNEKISQAGAHRAQETM 182 Query: 180 NQAMVTALAISALIAALV---GMILYFLLARS 208 A + A+ ISA + A+V G+++ +ARS Sbjct: 183 AAARLHAILISAAVIAVVTLMGLLIARKIARS 214 >ref|YP_003776312.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] gb|ADJ64404.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 535 Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 71/201 (35%), Positives = 109/201 (54%), Gaps = 4/201 (1%) Query: 1 MTVAKKLYALAAIAILGTLLIVGVQTYHLHRVDSAASYASANTVPSILELDSVIDGAYAM 60 MT+AKKL+ L ILG + + Y V AASY+S NTVPS+L L + A+ + Sbjct: 1 MTIAKKLHLLTLAVILGLASLSLLGIYQSREVAKAASYSSVNTVPSLLALGDAGEAAFGI 60 Query: 61 RISIWKYLANPTPEQRQETEKVINASSSQIARALDTYEKEDISDATDAQMLKDIRQHIAT 120 R+ IWKY A P R EK + ++ A D Y +EDISD TD ++L+ RQ A Sbjct: 61 RVGIWKYAAATDPVSRTRLEKAMAEQHDRVLAAFDRYAREDISDDTDRKLLEADRQAFAD 120 Query: 121 YDASLAKVMILAQKDAVAARNAMAADQAIV---DTMMSALDKQKKYNQKLGKAAAQTATA 177 Y+ A V+ + ++ A +Q +V D +++AL + +KY ++LG+ +TA Sbjct: 121 YEKQRAVVLRIG-AESRNEEALRAIEQLVVPPGDKLIAALAEHRKYKEQLGRQGVETAEG 179 Query: 178 TKNQAMVTALAISALIAALVG 198 + A+ +S L+AA+VG Sbjct: 180 ILQSSTYQAILVSLLVAAIVG 200 >ref|YP_003776311.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] gb|ADJ64403.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 64/212 (30%), Positives = 111/212 (52%), Gaps = 4/212 (1%) Query: 1 MTVAKKLYALAAIAILGTLLIVGVQTYHLHRVDSAASYASANTVPSILELDSVIDGAYAM 60 MT+A+KLY L +LG ++ V Y HR+ S+A Y++ +T+PS+L L+ D Y + Sbjct: 31 MTIARKLYLLIVAVVLGVIMQAVVGLYQSHRIASSAGYSATDTIPSVLALNGATDAIYGI 90 Query: 61 RISIWKYLANPTPEQRQETEKVINASSSQIARALDTYEKEDISDATDAQMLKDIRQHIAT 120 R++I +Y+ PT R++T + A + D +E+ ISD TD +ML+ R+ A Sbjct: 91 RLNIARYVIEPT--AREKTVANMAALHQKAQDFFDQFERCCISDDTDRRMLEADRRFFAE 148 Query: 121 YDA-SLAKVMILAQKDAVAARNAMAADQAIV-DTMMSALDKQKKYNQKLGKAAAQTATAT 178 Y+ +A V + + A R AM A +M+ L++ K YN++LG+ A+ A Sbjct: 149 YEKHRMAMVDLGSAGKEDALRVAMEEKMAPTGQRLMAVLNEHKNYNEQLGRQGAEAADEH 208 Query: 179 KNQAMVTALAISALIAALVGMILYFLLARSAH 210 ++ +A + L+ +V + L+ H Sbjct: 209 LQLSIYLTIAAATLVIVMVSALSLLLVRNIRH 240 >ref|XP_002534650.1| conserved hypothetical protein [Ricinus communis] gb|EEF27729.1| conserved hypothetical protein [Ricinus communis] Length = 565 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 57/184 (30%), Positives = 96/184 (52%), Gaps = 2/184 (1%) Query: 1 MTVAKKLYALAAIAILGTLLIVGVQTYHLHRVDSAASYASANTVPSILELDSVIDGAYAM 60 M+VAK++Y L A+A LG L+ GV + RV ++A+ PSI LD + + Sbjct: 1 MSVAKRMYILIAVAALGLFLLAGVSYFQTDRVFKYTNFANEMAAPSIEILDDTLSEFEKL 60 Query: 61 RISIWKYLANPTPEQRQETEKVINASSSQIARALDTYEKEDISDATDAQMLKDIRQHIAT 120 IW+++ N + Q EK + + ++ AL Y+ ISDA D Q+L + I Sbjct: 61 NSLIWQHMLNTDNSKMQVIEKEVAETHGKLMAALKRYDNF-ISDAQDKQLLGKDYEAIKA 119 Query: 121 YDASLAKVMILA-QKDAVAARNAMAADQAIVDTMMSALDKQKKYNQKLGKAAAQTATATK 179 YD + + L+ AR+A+ A+QA+++ + A+ + +++N KL K +A A A K Sbjct: 120 YDVLGSNTLTLSLSNKKTEARDALLANQAVIEGVQKAIREHRQFNNKLAKDSATQAAAVK 179 Query: 180 NQAM 183 A+ Sbjct: 180 QTAI 183 >ref|YP_003050590.1| methyl-accepting chemotaxis sensory transducer [Methylovorus glucosetrophus SIP3-4] gb|ACT50063.1| methyl-accepting chemotaxis sensory transducer [Methylovorus glucosetrophus SIP3-4] Length = 875 Score = 85.9 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 56/211 (26%), Positives = 112/211 (53%), Gaps = 4/211 (1%) Query: 1 MTVAKKLYALAAIAILGTLLIVGVQTYHLHRVDSAASYASANTVPSILELDSVIDGAYAM 60 MTVAK++Y L A+AILG + + G+ + ++RV ++++ +++PSI LD + + Sbjct: 1 MTVAKRMYLLMAVAILGLVSLAGLAYHQINRVYDITNFSNVDSMPSIARLDEALSEFEEL 60 Query: 61 RISIWKYLANPTPEQRQETEKVINASSSQIARALDTYEKEDISDATDAQMLKDIRQHIAT 120 +W+++ N ++ E E + A+ ++ L YE +ISD D ++L+ R +A Sbjct: 61 NTLVWQHMTNQDNAKKAEIETKVAAAHVRLTDTLKKYEDNNISDDEDKRLLQVDRLLLAD 120 Query: 121 YDASLAKVMILAQKDAV-AARNAMAADQAIVDTMMSALDKQKKYNQKLGKAAAQTATATK 179 YD V+ L+ + AR+A+ A + + + A+ +++N +L +A A A K Sbjct: 121 YDNLAGNVLTLSLANKHDEARDALLAGETTISKLQKAISDHRQHNVELAIKSADEAAAIK 180 Query: 180 NQA---MVTALAISALIAALVGMILYFLLAR 207 A M+ ++ ++ A++G ++ L R Sbjct: 181 ASATEFMIIIAIVALVLVAVIGFMIIRTLMR 211