BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3401.p (417 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776299.1| FAD-dependent pyridine nucleotide-disulfide ... 783 0.0 ref|YP_004750830.1| putative flavoprotein FAD oxidoreductase [Co... 679 0.0 emb|CBJ40896.1| nirB NH2 domain (NADH binding FAD binding) [Rals... 670 0.0 ref|YP_003750198.1| nirb nh2 domain (NADH binding fad binding) [... 669 0.0 ref|ZP_07673623.1| nitrite reductase [NAD(P)H], large subunit [R... 668 0.0 >ref|YP_003776299.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Herbaspirillum seropedicae SmR1] gb|ADJ64391.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 413 Score = 783 bits (2021), Expect = 0.0, Method: Composition-based stats. Identities = 388/409 (94%), Positives = 404/409 (98%) Query: 9 ADMTTAKPSLVVVGNGMAGMRTVEELLKLAPDLYDITVFGAEPHGNYNRIMLSPVLAGDK 68 A+ +TA+PSLVVVGNGMAGMRTVEELLKLAPDLYDITVFGAEPHGNYNRIMLSPVLAGDK Sbjct: 5 ANKSTARPSLVVVGNGMAGMRTVEELLKLAPDLYDITVFGAEPHGNYNRIMLSPVLAGDK 64 Query: 69 SIDDIMLNPRAWYDEHGITLHAGDPVVQIDRRQRTVHAQSGLAVKYDRLLLATGSTPFII 128 SIDDIMLNPRAWYD++GITLHAGDPVV IDRRQRTVHA+SGL V+YDRLLLATGSTPFII Sbjct: 65 SIDDIMLNPRAWYDDNGITLHAGDPVVHIDRRQRTVHAKSGLTVQYDRLLLATGSTPFII 124 Query: 129 PVPGHQLPGVIAFRDIQDVDTMLQAARTHRHAVVIGGGLLGLEAANGLMRQGMDVTVVHV 188 PVPGHQLPGVIAFRDIQDVD MLQAARTHRHAVVIGGGLLGLEAANGLMRQGMDVTVVHV Sbjct: 125 PVPGHQLPGVIAFRDIQDVDAMLQAARTHRHAVVIGGGLLGLEAANGLMRQGMDVTVVHV 184 Query: 189 TDALMNQQLDKPAAALLKKALEDKGLRFLLNAHTDEIVGPDRVTAVRFKDGSSIPADLVV 248 TDALMNQQLDKPAAALLKKALEDKGLRFLLNAHT+EIVGPDRVTAVRFKDGSSIPADLVV Sbjct: 185 TDALMNQQLDKPAAALLKKALEDKGLRFLLNAHTEEIVGPDRVTAVRFKDGSSIPADLVV 244 Query: 249 MTAGVRPNIALAKSAGLHCERAIIVDDTLQTYDPRIYAVGECVQHRKATFGLVAPIWDQA 308 MTAGVRPNIALAK+AGLHCERAIIVDDTLQTYDPR+YAVGECVQHRKATFGLVAPIWDQA Sbjct: 245 MTAGVRPNIALAKAAGLHCERAIIVDDTLQTYDPRVYAVGECVQHRKATFGLVAPIWDQA 304 Query: 309 RVCGAHLAGAGHRRYVQQATATKLKVTGVDLYSAGDFIGGEDTEDLVVRDPRRGIYKRLV 368 RVCGAHLAGAGHRRYVQQATATKLKVTGVDLYSAGDFIGG+DTEDL+VRDPRRG+YKRLV Sbjct: 305 RVCGAHLAGAGHRRYVQQATATKLKVTGVDLYSAGDFIGGDDTEDLIVRDPRRGVYKRLV 364 Query: 369 LRGSRLIGAVLYGDVKDGPWYFDLIQSGRDISAFRRELPFGQAMCQHAA 417 LRG+RL+GAVLYGDVKDGPWYFDLIQSGRDIS+FRRELPFGQAMCQ AA Sbjct: 365 LRGTRLVGAVLYGDVKDGPWYFDLIQSGRDISSFRRELPFGQAMCQQAA 413 >ref|YP_004750830.1| putative flavoprotein FAD oxidoreductase [Collimonas fungivorans Ter331] gb|AEK60007.1| putative flavoprotein FAD oxidoreductase [Collimonas fungivorans Ter331] Length = 442 Score = 679 bits (1753), Expect = 0.0, Method: Composition-based stats. Identities = 334/406 (82%), Positives = 369/406 (90%) Query: 12 TTAKPSLVVVGNGMAGMRTVEELLKLAPDLYDITVFGAEPHGNYNRIMLSPVLAGDKSID 71 T KP+L V+GNGMAGMRTVEELLKLAPDLYDITVFGAEPHGNYNRI+LSP+LAGDKS+D Sbjct: 37 TARKPALAVIGNGMAGMRTVEELLKLAPDLYDITVFGAEPHGNYNRILLSPLLAGDKSMD 96 Query: 72 DIMLNPRAWYDEHGITLHAGDPVVQIDRRQRTVHAQSGLAVKYDRLLLATGSTPFIIPVP 131 DIMLN WY +HGITLHAGDPV IDR++R V +++G+ ++YDRLLLATGS PFIIPVP Sbjct: 97 DIMLNTPEWYRQHGITLHAGDPVTGIDRQRRIVRSRAGIELRYDRLLLATGSKPFIIPVP 156 Query: 132 GHQLPGVIAFRDIQDVDTMLQAARTHRHAVVIGGGLLGLEAANGLMRQGMDVTVVHVTDA 191 GHQLPGVIAFRDIQDV+TML AAR+HRHAVVIGGGLLGLEAANGL+RQGMDVTVVHV D+ Sbjct: 157 GHQLPGVIAFRDIQDVETMLAAARSHRHAVVIGGGLLGLEAANGLLRQGMDVTVVHVMDS 216 Query: 192 LMNQQLDKPAAALLKKALEDKGLRFLLNAHTDEIVGPDRVTAVRFKDGSSIPADLVVMTA 251 LM +QLDK AA LLKKALE KGLRFLLNA T EI+G ++VTAVRFKDG+ IPADLVVMTA Sbjct: 217 LMERQLDKSAAVLLKKALEQKGLRFLLNAQTAEIIGAEQVTAVRFKDGTEIPADLVVMTA 276 Query: 252 GVRPNIALAKSAGLHCERAIIVDDTLQTYDPRIYAVGECVQHRKATFGLVAPIWDQARVC 311 GVRPNI LA+ AGLHCERAI+VDDTLQTYDPRIYAVGECVQHR ATFGLVAPIWDQARVC Sbjct: 277 GVRPNIELAQQAGLHCERAIVVDDTLQTYDPRIYAVGECVQHRMATFGLVAPIWDQARVC 336 Query: 312 GAHLAGAGHRRYVQQATATKLKVTGVDLYSAGDFIGGEDTEDLVVRDPRRGIYKRLVLRG 371 GAHLAGAGHRRYVQQATATKLKVTGVDLYSAGDFIGGE +EDLV+RDPRRGIYKRLV++G Sbjct: 337 GAHLAGAGHRRYVQQATATKLKVTGVDLYSAGDFIGGEGSEDLVLRDPRRGIYKRLVIKG 396 Query: 372 SRLIGAVLYGDVKDGPWYFDLIQSGRDISAFRRELPFGQAMCQHAA 417 ++GAVLYGDVKDGPWYF++IQ DISA R +L FGQA+C AA Sbjct: 397 PHIVGAVLYGDVKDGPWYFEMIQGRTDISALRSQLLFGQALCAQAA 442 >emb|CBJ40896.1| nirB NH2 domain (NADH binding FAD binding) [Ralstonia solanacearum CMR15] Length = 409 Score = 670 bits (1729), Expect = 0.0, Method: Composition-based stats. Identities = 329/404 (81%), Positives = 364/404 (90%) Query: 14 AKPSLVVVGNGMAGMRTVEELLKLAPDLYDITVFGAEPHGNYNRIMLSPVLAGDKSIDDI 73 A+P LVV+GNGMAGMRTVEELLKLAPDLYDITVFG EPHGNYNRI+LSPVLAG+K +DDI Sbjct: 5 ARPKLVVIGNGMAGMRTVEELLKLAPDLYDITVFGEEPHGNYNRILLSPVLAGEKRVDDI 64 Query: 74 MLNPRAWYDEHGITLHAGDPVVQIDRRQRTVHAQSGLAVKYDRLLLATGSTPFIIPVPGH 133 MLN R WY+EHGITLHAGDPVV IDR +RTV ++ G+ V+YDRLL+ATGS PFI+PVPGH Sbjct: 65 MLNTREWYEEHGITLHAGDPVVAIDRPRRTVRSRGGVEVRYDRLLMATGSRPFILPVPGH 124 Query: 134 QLPGVIAFRDIQDVDTMLQAARTHRHAVVIGGGLLGLEAANGLMRQGMDVTVVHVTDALM 193 LPGVIAFRDIQDV+TML AAR HRHAVVIGGGLLGLEAANGLMRQGMD TVVH+++ LM Sbjct: 125 MLPGVIAFRDIQDVETMLDAARNHRHAVVIGGGLLGLEAANGLMRQGMDATVVHISETLM 184 Query: 194 NQQLDKPAAALLKKALEDKGLRFLLNAHTDEIVGPDRVTAVRFKDGSSIPADLVVMTAGV 253 +QLDKPAAALLK ALE KGLRFLL A T E++G DRVTAVRFKDG+ IPADLVVMTAGV Sbjct: 185 ERQLDKPAAALLKVALEAKGLRFLLGAQTTELIGTDRVTAVRFKDGTEIPADLVVMTAGV 244 Query: 254 RPNIALAKSAGLHCERAIIVDDTLQTYDPRIYAVGECVQHRKATFGLVAPIWDQARVCGA 313 RPNI LA+SAGLHCERAI+VDDTLQTYDPRIYAVGECVQHR ATFGLVAPIWDQARVC A Sbjct: 245 RPNIELARSAGLHCERAIVVDDTLQTYDPRIYAVGECVQHRSATFGLVAPIWDQARVCAA 304 Query: 314 HLAGAGHRRYVQQATATKLKVTGVDLYSAGDFIGGEDTEDLVVRDPRRGIYKRLVLRGSR 373 HLAGAGHRRYVQQATATKLKVTGVDLYSAGDFIGGE TED+V+RDPRRG+YKRLVL+ R Sbjct: 305 HLAGAGHRRYVQQATATKLKVTGVDLYSAGDFIGGEGTEDIVLRDPRRGVYKRLVLKDDR 364 Query: 374 LIGAVLYGDVKDGPWYFDLIQSGRDISAFRRELPFGQAMCQHAA 417 ++GAVLYGDV DGPWYF+LIQ I+A R+ L FG+A+C+ A Sbjct: 365 IVGAVLYGDVADGPWYFELIQRQAPIAAMRQRLLFGRALCEAEA 408 >ref|YP_003750198.1| nirb nh2 domain (NADH binding fad binding) [Ralstonia solanacearum PSI07] emb|CBJ35576.1| nirB NH2 domain (NADH binding FAD binding) [Ralstonia solanacearum PSI07] emb|CCA79867.1| nirB NH2 domain (NADH binding FAD binding) [blood disease bacterium R229] Length = 409 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 328/404 (81%), Positives = 365/404 (90%) Query: 14 AKPSLVVVGNGMAGMRTVEELLKLAPDLYDITVFGAEPHGNYNRIMLSPVLAGDKSIDDI 73 A+P LVV+GNGMAGMRTVEELLKLAPDLYDITVFG EPHGNYNRI+LSPVLAG+K +DDI Sbjct: 5 ARPKLVVIGNGMAGMRTVEELLKLAPDLYDITVFGEEPHGNYNRILLSPVLAGEKRVDDI 64 Query: 74 MLNPRAWYDEHGITLHAGDPVVQIDRRQRTVHAQSGLAVKYDRLLLATGSTPFIIPVPGH 133 MLN RAWY+E+GITLHAGDPVV IDR +RTV ++ G+ V+YDRLL+ATGS PFI+PVPGH Sbjct: 65 MLNTRAWYEENGITLHAGDPVVAIDRPRRTVRSRGGVEVRYDRLLMATGSRPFILPVPGH 124 Query: 134 QLPGVIAFRDIQDVDTMLQAARTHRHAVVIGGGLLGLEAANGLMRQGMDVTVVHVTDALM 193 LPGVIAFRDIQDV+TML+AAR HRHAVVIGGGLLGLEAANGL+RQGMDVTVVH++D LM Sbjct: 125 MLPGVIAFRDIQDVETMLEAARNHRHAVVIGGGLLGLEAANGLLRQGMDVTVVHISDTLM 184 Query: 194 NQQLDKPAAALLKKALEDKGLRFLLNAHTDEIVGPDRVTAVRFKDGSSIPADLVVMTAGV 253 +QLDKPAAALLK ALE KGLRFLL A T E++G DRV+AVRFKDG+ IPADLVVMTAGV Sbjct: 185 ERQLDKPAAALLKVALEAKGLRFLLGAQTTELIGTDRVSAVRFKDGTEIPADLVVMTAGV 244 Query: 254 RPNIALAKSAGLHCERAIIVDDTLQTYDPRIYAVGECVQHRKATFGLVAPIWDQARVCGA 313 RPNI LA+SAGLHCERAI+VDDTLQTYDPRIYAVGECVQHR ATFGLVAPIWDQARVC A Sbjct: 245 RPNIELARSAGLHCERAIVVDDTLQTYDPRIYAVGECVQHRSATFGLVAPIWDQARVCAA 304 Query: 314 HLAGAGHRRYVQQATATKLKVTGVDLYSAGDFIGGEDTEDLVVRDPRRGIYKRLVLRGSR 373 HLAGAGHRRYVQQ TATKLKVTGVDLYSAGDFIGGE TED+V+RDPRRG+YKRLVLR Sbjct: 305 HLAGAGHRRYVQQTTATKLKVTGVDLYSAGDFIGGEGTEDIVLRDPRRGVYKRLVLRDDC 364 Query: 374 LIGAVLYGDVKDGPWYFDLIQSGRDISAFRRELPFGQAMCQHAA 417 ++GAVLYGDV DGPWYF+LIQ I+A R+ L FG+A+C+ A Sbjct: 365 IVGAVLYGDVADGPWYFELIQRQAPIAAIRQRLLFGRALCEAEA 408 >ref|ZP_07673623.1| nitrite reductase [NAD(P)H], large subunit [Ralstonia sp. 5_7_47FAA] gb|EFP68002.1| nitrite reductase [NAD(P)H], large subunit [Ralstonia sp. 5_7_47FAA] Length = 435 Score = 668 bits (1724), Expect = 0.0, Method: Composition-based stats. Identities = 329/412 (79%), Positives = 368/412 (89%) Query: 6 GSVADMTTAKPSLVVVGNGMAGMRTVEELLKLAPDLYDITVFGAEPHGNYNRIMLSPVLA 65 G MT+A+P LVV+GNGMAGMRTVEELLKLAPDLYDITVFG EPHGNYNRI+LSPVLA Sbjct: 23 GGGVSMTSARPKLVVIGNGMAGMRTVEELLKLAPDLYDITVFGEEPHGNYNRILLSPVLA 82 Query: 66 GDKSIDDIMLNPRAWYDEHGITLHAGDPVVQIDRRQRTVHAQSGLAVKYDRLLLATGSTP 125 G+K +DDIMLN R WYD++ I LHAGDPVV IDR +RT+ ++ G+ ++YDRLL+ATGS P Sbjct: 83 GEKQVDDIMLNTREWYDQNRIVLHAGDPVVAIDRPRRTLRSRDGVEMRYDRLLIATGSRP 142 Query: 126 FIIPVPGHQLPGVIAFRDIQDVDTMLQAARTHRHAVVIGGGLLGLEAANGLMRQGMDVTV 185 FI+PVPGH LPGVIAFRDIQDV+TML+AAR HRHAVVIGGGLLGLEAANGLMRQGMDVTV Sbjct: 143 FILPVPGHLLPGVIAFRDIQDVETMLEAARNHRHAVVIGGGLLGLEAANGLMRQGMDVTV 202 Query: 186 VHVTDALMNQQLDKPAAALLKKALEDKGLRFLLNAHTDEIVGPDRVTAVRFKDGSSIPAD 245 VH+ D LM +QLDKPAA LL+KALE KGLRFLL AHT E++G DRVTAVRFKDG+ IPAD Sbjct: 203 VHLPDTLMERQLDKPAAQLLQKALEAKGLRFLLGAHTAELLGTDRVTAVRFKDGTQIPAD 262 Query: 246 LVVMTAGVRPNIALAKSAGLHCERAIIVDDTLQTYDPRIYAVGECVQHRKATFGLVAPIW 305 LVVMTAGVRPNI LAK+AGLHCERAIIVDDTLQTYDPRIYAVGECVQHR ATFGLVAPIW Sbjct: 263 LVVMTAGVRPNIELAKAAGLHCERAIIVDDTLQTYDPRIYAVGECVQHRSATFGLVAPIW 322 Query: 306 DQARVCGAHLAGAGHRRYVQQATATKLKVTGVDLYSAGDFIGGEDTEDLVVRDPRRGIYK 365 DQARVC AHLAGAGHRRYVQQATATKLKVTGVDLYSAGDFIGG+ TED+V+RDPRRG+YK Sbjct: 323 DQARVCAAHLAGAGHRRYVQQATATKLKVTGVDLYSAGDFIGGDGTEDIVLRDPRRGVYK 382 Query: 366 RLVLRGSRLIGAVLYGDVKDGPWYFDLIQSGRDISAFRRELPFGQAMCQHAA 417 RLVL+ R++GAVLYGDV DGPWYFDLIQ I++ R+ L FG+A+C+ A Sbjct: 383 RLVLKEDRIVGAVLYGDVADGPWYFDLIQREVPITSIRQRLLFGRALCEAEA 434