BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3398.p         (105 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_985621.1| hypothetical protein Ajs_1326 [Acidovorax sp. J...   136   9e-31
ref|YP_586169.1| hypothetical protein Rmet_4032 [Cupriavidus met...   134   6e-30
ref|YP_411051.1| hypothetical protein Nmul_A0351 [Nitrosospira m...   132   2e-29
ref|YP_003278733.1| hypothetical protein CtCNB1_2691 [Comamonas ...   129   2e-28
ref|YP_004234873.1| hypothetical protein Acav_2394 [Acidovorax a...   129   2e-28

>ref|YP_985621.1| hypothetical protein Ajs_1326 [Acidovorax sp. JS42]
 sp|A1W5M0|Y1326_ACISJ RecName: Full=UPF0060 membrane protein Ajs_1326
 gb|ABM41545.1| protein of unknown function UPF0060 [Acidovorax sp. JS42]
          Length = 105

 Score =  136 bits (343), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 86/105 (81%), Positives = 94/105 (89%)

Query: 1   MKTVFLYLCTALAEIVGCYLPYLWLKQDRSAWLLLPAAASLALFAWLLTLHEAASGRVYA 60
           M+T  L++ TALAEIVGCYLPYLWLKQ RSAWLL+PAAASLALFAWLLTLHE A+GRVYA
Sbjct: 1   MRTFALFIATALAEIVGCYLPYLWLKQGRSAWLLVPAAASLALFAWLLTLHETAAGRVYA 60

Query: 61  AYGGVYIAVAMLWLWAVDGVRPSAWDCAGVAVALAGMALIAFQPR 105
           AYGGVYI VA+LWLW VDG+RP+AWD AGVAVAL GM LI FQPR
Sbjct: 61  AYGGVYIGVALLWLWIVDGIRPTAWDVAGVAVALTGMGLIMFQPR 105


>ref|YP_586169.1| hypothetical protein Rmet_4032 [Cupriavidus metallidurans CH34]
 sp|Q1LG26|Y4032_RALME RecName: Full=UPF0060 membrane protein Rmet_4032
 gb|ABF10900.1| conserved hypothetical protein; putative inner membrane protein
           [Cupriavidus metallidurans CH34]
          Length = 105

 Score =  134 bits (336), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 85/105 (80%), Positives = 92/105 (87%)

Query: 1   MKTVFLYLCTALAEIVGCYLPYLWLKQDRSAWLLLPAAASLALFAWLLTLHEAASGRVYA 60
           MKTV LYL TALAEI+GCYLPYLWL+Q  S W+LLP AASLA+FAWLLTLH  ASGRVYA
Sbjct: 1   MKTVGLYLLTALAEILGCYLPYLWLRQGASPWVLLPGAASLAVFAWLLTLHPDASGRVYA 60

Query: 61  AYGGVYIAVAMLWLWAVDGVRPSAWDCAGVAVALAGMALIAFQPR 105
           AYGGVYIA+A+ WLWAVDGVRPS WD AGVAVAL GMA+I FQPR
Sbjct: 61  AYGGVYIAMAIAWLWAVDGVRPSPWDIAGVAVALGGMAIIVFQPR 105


>ref|YP_411051.1| hypothetical protein Nmul_A0351 [Nitrosospira multiformis ATCC
           25196]
 sp|Q2YC62|Y351_NITMU RecName: Full=UPF0060 membrane protein Nmul_A0351
 gb|ABB73659.1| Protein of unknown function UPF0060 [Nitrosospira multiformis ATCC
           25196]
          Length = 110

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 81/105 (77%), Positives = 93/105 (88%)

Query: 1   MKTVFLYLCTALAEIVGCYLPYLWLKQDRSAWLLLPAAASLALFAWLLTLHEAASGRVYA 60
           +KT+FL+L TALAEIVGCYLPYLWLK+D SAWLL+PAAASLALFAWLLTLH   +GR YA
Sbjct: 4   LKTLFLFLATALAEIVGCYLPYLWLKRDGSAWLLVPAAASLALFAWLLTLHPTDAGRTYA 63

Query: 61  AYGGVYIAVAMLWLWAVDGVRPSAWDCAGVAVALAGMALIAFQPR 105
           AYGGVY++VA+LWLWAVDGVRP+AWD AG  +AL GMA+I F PR
Sbjct: 64  AYGGVYVSVAVLWLWAVDGVRPTAWDMAGSLLALTGMAIIMFGPR 108


>ref|YP_003278733.1| hypothetical protein CtCNB1_2691 [Comamonas testosteroni CNB-2]
 gb|ACY33437.1| hypothetical membrane protein [Comamonas testosteroni CNB-2]
          Length = 109

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 80/105 (76%), Positives = 92/105 (87%)

Query: 1   MKTVFLYLCTALAEIVGCYLPYLWLKQDRSAWLLLPAAASLALFAWLLTLHEAASGRVYA 60
           +KT+ L++ TA+AEIVGCYLP+LWLKQ  SAWLLLPAA SLALF WLLTLH +ASGRVYA
Sbjct: 4   IKTLLLFVLTAVAEIVGCYLPWLWLKQGGSAWLLLPAAVSLALFVWLLTLHPSASGRVYA 63

Query: 61  AYGGVYIAVAMLWLWAVDGVRPSAWDCAGVAVALAGMALIAFQPR 105
           AYGG+YI+VA+LWLW VDG++PSAWD AGVAV L G  LIAFQPR
Sbjct: 64  AYGGIYISVALLWLWLVDGIKPSAWDMAGVAVCLLGAGLIAFQPR 108


>ref|YP_004234873.1| hypothetical protein Acav_2394 [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gb|ADX46306.1| protein of unknown function UPF0060 [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 125

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 80/105 (76%), Positives = 90/105 (85%)

Query: 1   MKTVFLYLCTALAEIVGCYLPYLWLKQDRSAWLLLPAAASLALFAWLLTLHEAASGRVYA 60
           +K + LY  TALAEI GCYLP+LWL+QDRSAWLL+P AA LALFAWLLTLH AA+GRVYA
Sbjct: 18  LKILVLYAVTALAEIAGCYLPWLWLRQDRSAWLLVPGAACLALFAWLLTLHPAAAGRVYA 77

Query: 61  AYGGVYIAVAMLWLWAVDGVRPSAWDCAGVAVALAGMALIAFQPR 105
           AYGGVY+AVA+ WLWAVDG+RP  WD AG AV LAGMA+IAF PR
Sbjct: 78  AYGGVYVAVALGWLWAVDGIRPDRWDLAGAAVTLAGMAIIAFAPR 122