BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3397.p         (192 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776294.1| hypothetical protein Hsero_2894 [Herbaspiril...   285   2e-75
ref|XP_002535966.1| Protein srpB, putative [Ricinus communis] >g...   281   5e-74
ref|YP_001862952.1| MgtC/SapB transporter [Burkholderia phymatum...   167   8e-40
ref|NP_770456.1| sulfur-regulated protein [Bradyrhizobium japoni...   127   6e-28
ref|YP_531987.1| MgtC/SapB transporter [Rhodopseudomonas palustr...   127   9e-28

>ref|YP_003776294.1| hypothetical protein Hsero_2894 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64386.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 177

 Score =  285 bits (730), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 145/167 (86%), Positives = 159/167 (95%)

Query: 26  PRLSMTDHLEIFYRLLFAMLIGCVIGIDRNLRGKPTGMKTLGLVALGSALVTMAAMDFSL 85
           P  +MTD+LEIF+RLLFAMLIGC IGIDRNLRGKPTGMKTLGLVALGSALVTMAAM+F+L
Sbjct: 11  PDATMTDYLEIFHRLLFAMLIGCAIGIDRNLRGKPTGMKTLGLVALGSALVTMAAMNFAL 70

Query: 86  ESDVHSRDAVSRAIQGVITGIGFLGAGVIIHEQRSEKVRGLTTAASIWVTAAVGIVCGAG 145
            ++ H+RDAVSRAIQGVITGIGFLGAGVIIHEQ +EKVRGLTTAASIWVTAAVGIVCGAG
Sbjct: 71  GAEDHNRDAVSRAIQGVITGIGFLGAGVIIHEQWTEKVRGLTTAASIWVTAAVGIVCGAG 130

Query: 146 WWRVALMATGLILTLFVVGRPLEHFLHRRWLRKTDDERADISAREED 192
           WW+VALMATGLIL LFV+GRPLE FLHR+W+RK+DDERADISAREED
Sbjct: 131 WWQVALMATGLILILFVIGRPLEQFLHRQWMRKSDDERADISAREED 177


>ref|XP_002535966.1| Protein srpB, putative [Ricinus communis]
 gb|EEF26417.1| Protein srpB, putative [Ricinus communis]
          Length = 163

 Score =  281 bits (718), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 145/163 (88%), Positives = 158/163 (96%)

Query: 30  MTDHLEIFYRLLFAMLIGCVIGIDRNLRGKPTGMKTLGLVALGSALVTMAAMDFSLESDV 89
           MTD+LEIF+RLLFAMLIGC IGIDRNLRGKPTGMKTLGLVALGSALVTMAAM+F+L ++ 
Sbjct: 1   MTDYLEIFHRLLFAMLIGCAIGIDRNLRGKPTGMKTLGLVALGSALVTMAAMNFALGAED 60

Query: 90  HSRDAVSRAIQGVITGIGFLGAGVIIHEQRSEKVRGLTTAASIWVTAAVGIVCGAGWWRV 149
           H+RDAVSRAIQGVITGIGFLGAGVIIHEQR+EKVRGLTTAASIWVTAAVGIVCGAGWW+V
Sbjct: 61  HNRDAVSRAIQGVITGIGFLGAGVIIHEQRTEKVRGLTTAASIWVTAAVGIVCGAGWWQV 120

Query: 150 ALMATGLILTLFVVGRPLEHFLHRRWLRKTDDERADISAREED 192
           ALMATGLIL LFV+GRPLE FLHR+W+RK+DDERADISAREED
Sbjct: 121 ALMATGLILILFVIGRPLEQFLHRQWMRKSDDERADISAREED 163


>ref|YP_001862952.1| MgtC/SapB transporter [Burkholderia phymatum STM815]
 gb|ACC75906.1| MgtC/SapB transporter [Burkholderia phymatum STM815]
          Length = 164

 Score =  167 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 97/165 (58%), Positives = 122/165 (73%), Gaps = 4/165 (2%)

Query: 30  MTDHLEIF---YRLLFAMLIGCVIGIDRNLRGKPTGMKTLGLVALGSALVTMAAMDFSLE 86
           M  H++ F    R++ A+L+GC++G+DRNL GKPTG+KTLGLVALGS LVTMA M F L 
Sbjct: 1   MISHVQFFESILRMVAAVLVGCIVGLDRNLHGKPTGVKTLGLVALGSCLVTMAGMSFELH 60

Query: 87  SDVHSRDAVSRAIQGVITGIGFLGAGVIIHEQRSEKVRGLTTAASIWVTAAVGIVCGAGW 146
              +  DA  RAIQGVITGIGFLGAGVI+    + K+ GLTTAASIWVTAA+GIVCG G 
Sbjct: 61  GFTNGSDA-GRAIQGVITGIGFLGAGVILQNHATGKISGLTTAASIWVTAALGIVCGIGA 119

Query: 147 WRVALMATGLILTLFVVGRPLEHFLHRRWLRKTDDERADISAREE 191
           W++A +AT L+L L  VG  +E  LHRRWL K+ +E+A I+  +E
Sbjct: 120 WQIAGIATALLLLLLSVGASIERALHRRWLGKSPEEQAAITRHDE 164


>ref|NP_770456.1| sulfur-regulated protein [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49081.1| bll3816 [Bradyrhizobium japonicum USDA 110]
          Length = 167

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 71/155 (45%), Positives = 95/155 (61%), Gaps = 2/155 (1%)

Query: 35  EIFYRLLFAMLIGCVIGIDRNLRGKPTGMKTLGLVALGSALVTMAAMDFSLESDVHSRDA 94
           EI  RL  A L GC IG++R+L GKP G+KTLG+V L +A V + A+ F+    +   DA
Sbjct: 8   EILLRLGVATLAGCAIGLNRDLHGKPIGLKTLGIVGLSTATVVLLAVQFAEAGKI--TDA 65

Query: 95  VSRAIQGVITGIGFLGAGVIIHEQRSEKVRGLTTAASIWVTAAVGIVCGAGWWRVALMAT 154
            SR IQG++TGIGFLGAGVI+HE    +VRGLT+AA  ++ A +GI CG G W +   A 
Sbjct: 66  ASRVIQGILTGIGFLGAGVIVHESDRFRVRGLTSAACTFLAACLGIACGVGQWPIVGTAL 125

Query: 155 GLILTLFVVGRPLEHFLHRRWLRKTDDERADISAR 189
            L   +  VG   EH+LHR    + +    D S +
Sbjct: 126 TLAFLILTVGNRAEHWLHRMLGARDETHETDASPK 160


>ref|YP_531987.1| MgtC/SapB transporter [Rhodopseudomonas palustris BisB18]
 gb|ABD87668.1| MgtC/SapB transporter [Rhodopseudomonas palustris BisB18]
          Length = 178

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 78/156 (50%), Positives = 101/156 (64%), Gaps = 4/156 (2%)

Query: 30  MTDHLEIFYRLLFAMLIGCVIGIDRNLRGKPTGMKTLGLVALGSALVTMAAMDFSLESDV 89
           M +  EI  RL  A L G  IG++R+L GKP G++TLGLV+L SA+V M A     +S  
Sbjct: 1   MIEWSEIVLRLGVATLAGGAIGLNRDLHGKPIGVRTLGLVSLASAVVVMLAD--PGDSVG 58

Query: 90  HSRDAVSRAIQGVITGIGFLGAGVIIHEQRSEKVRGLTTAASIWVTAAVGIVCGAGWWRV 149
              DA SR IQG++TGIGFLGAGVI+      +VRGLT+AA  W+TA VGIVCGAG WR+
Sbjct: 59  RITDATSRVIQGILTGIGFLGAGVIMRSPHRARVRGLTSAACTWLTACVGIVCGAGQWRI 118

Query: 150 ALMATGLILTLFVVGRPLEHFLHRRWLRKTDDERAD 185
             +A  +   + ++G PLE  LHR  L    DE+A+
Sbjct: 119 VGVALAIAFVILLIGGPLERTLHR--LLGGKDEQAE 152