BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3395.p (273 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776292.1| AraC family transcription regulator protein ... 365 3e-99 ref|YP_002933949.1| transcriptional regulator, AraC family prote... 181 7e-44 ref|YP_003296314.1| transcriptional regulator, AraC family [Edwa... 179 3e-43 ref|ZP_04625810.1| AraC-type DNA-binding domain-containing prote... 178 1e-42 ref|ZP_04632156.1| AraC-type DNA-binding domain-containing prote... 174 1e-41 >ref|YP_003776292.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64384.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 365 bits (938), Expect = 3e-99, Method: Composition-based stats. Identities = 203/272 (74%), Positives = 228/272 (83%), Gaps = 2/272 (0%) Query: 3 SDIAILPFAHGT--RPTLTRIRARHEQQLRQVFIGLASICHVRQGKKRMQWGHRHLLCGQ 60 S + LP AH T RP L+RIR R EQQLRQVFIGLASICHVRQGKKR+QW HR+L CG Sbjct: 2 SSNSTLPPAHATNPRPVLSRIRCREEQQLRQVFIGLASICHVRQGKKRLQWHHRNLHCGP 61 Query: 61 DVLVLIAAGTQVNVANLPKGGEYAADMVSLPPALIERFRLHYPGQGVQARDASAVSSVAQ 120 + L+LIAAGTQ+NVANLP+ GEYAADMVSLP +LIERFRLHYPGQG A AVS+ A Sbjct: 62 EGLLLIAAGTQLNVANLPRNGEYAADMVSLPASLIERFRLHYPGQGSLASAPPAVSTTAL 121 Query: 121 DADILRAWRHLQDCIREEAASELQCQAAEGLLLALSLRGAIGGLLRERGDAISHHIEQHL 180 D LRAWRHL C++E+AA ELQCQAAEGLLLALSL+GA LLR+R DA+SH IEQ L Sbjct: 122 APDTLRAWRHLHACMQEDAAPELQCQAAEGLLLALSLQGAGAALLRDRSDALSHRIEQQL 181 Query: 181 LMLAPEERSLERVAEAFHCSVSTLRRRLAREQTGFRELLDKVQLGLALDQLQASSLPIAD 240 LML PE RSLE++A + HCSVSTLRRRL REQTGFRELLDKVQLG AL+QLQASSL IAD Sbjct: 182 LMLPPEHRSLEQIAASLHCSVSTLRRRLVREQTGFRELLDKVQLGQALEQLQASSLSIAD 241 Query: 241 IASACGYDSPSRFAMRFRQHYGISPSELRQTL 272 IA+ CGYDSPSRFA+RFRQH+G+SPS+LRQTL Sbjct: 242 IAARCGYDSPSRFAVRFRQHFGLSPSQLRQTL 273 >ref|YP_002933949.1| transcriptional regulator, AraC family protein [Edwardsiella ictaluri 93-146] gb|ACR69714.1| transcriptional regulator, AraC family protein [Edwardsiella ictaluri 93-146] Length = 266 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 110/257 (42%), Positives = 149/257 (57%), Gaps = 1/257 (0%) Query: 16 PTLTRIRARHEQQLRQVFIGLASICHVRQGKKRMQWGHRHLLCGQDVLVLIAAGTQVNVA 75 PT+ +I AR QLR+V + ++C VRQG K +QWG R+ + G D LVL G++V++A Sbjct: 9 PTVQQISARQSHQLRRVTLFSPALCRVRQGSKTIQWGERYEVTGGDSLVLFPGGSEVSMA 68 Query: 76 NLPKGGEYAADMVSLPPALIERFRLHYPGQGVQARDASAVSSVAQDADILRAWRHLQDCI 135 N G Y A+M+ LP AL+ +FR HYP Q V + +A S+ + W + D + Sbjct: 69 NQTGAGYYRAEMLYLPAALLRQFRKHYP-QAVPSDGTTASLSLPMTPALTLLWDTMMDAL 127 Query: 136 REEAASELQCQAAEGLLLALSLRGAIGGLLRERGDAISHHIEQHLLMLAPEERSLERVAE 195 R A L AE LLLAL G LL ER D ++ I+Q LL+ +A+ Sbjct: 128 RAPLAPPLLNHLAESLLLALQPSGHTALLLNERHDRLTEQIQQLLLLDPAYAWQATDIAQ 187 Query: 196 AFHCSVSTLRRRLAREQTGFRELLDKVQLGLALDQLQASSLPIADIASACGYDSPSRFAM 255 H + STLRRRL E FR++LD V+LG AL LQ+ + PI DIAS GY SPSRF Sbjct: 188 RLHMAESTLRRRLNAEGKRFRDILDDVRLGQALLALQSGNTPIGDIASQSGYASPSRFTA 247 Query: 256 RFRQHYGISPSELRQTL 272 RF + YG++PS LRQ + Sbjct: 248 RFVRRYGLTPSALRQAM 264 >ref|YP_003296314.1| transcriptional regulator, AraC family [Edwardsiella tarda EIB202] gb|ACY85103.1| transcriptional regulator, AraC family [Edwardsiella tarda EIB202] gb|ADM42153.1| Transcriptional regulator, AraC/XylS family [Edwardsiella tarda FL6-60] Length = 266 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 110/257 (42%), Positives = 150/257 (58%), Gaps = 1/257 (0%) Query: 16 PTLTRIRARHEQQLRQVFIGLASICHVRQGKKRMQWGHRHLLCGQDVLVLIAAGTQVNVA 75 PT+ +I AR QLR+V + ++C VRQG K +QWG R + G D LVL G++V++A Sbjct: 9 PTVQQISARQSHQLRRVTLFSPALCRVRQGSKTIQWGERCEVAGGDSLVLFPGGSEVSMA 68 Query: 76 NLPKGGEYAADMVSLPPALIERFRLHYPGQGVQARDASAVSSVAQDADILRAWRHLQDCI 135 N G Y A+M+ LP AL+ +FR HYP Q + +A+A ++ + W + D + Sbjct: 69 NQTGAGYYRAEMLYLPAALLRQFRKHYP-QAAPSDEAAASLALPMTPTLTLLWDAVMDAL 127 Query: 136 REEAASELQCQAAEGLLLALSLRGAIGGLLRERGDAISHHIEQHLLMLAPEERSLERVAE 195 R A L AE LLLAL G LL ER D ++ I+Q LL+ VA+ Sbjct: 128 RAPLAPPLLNHLAESLLLALQPSGHTALLLNERHDRLTEQIQQLLLLDPAYAWQATDVAQ 187 Query: 196 AFHCSVSTLRRRLAREQTGFRELLDKVQLGLALDQLQASSLPIADIASACGYDSPSRFAM 255 H + STLRRRL+ E FR++LD V+LG AL LQ+ + PI DIAS GY SPSRF Sbjct: 188 RLHMAESTLRRRLSAEGKSFRDILDDVRLGQALLALQSGNAPIGDIASQSGYASPSRFTA 247 Query: 256 RFRQHYGISPSELRQTL 272 RF + YG++PS LRQ + Sbjct: 248 RFVRRYGLTPSALRQAM 264 >ref|ZP_04625810.1| AraC-type DNA-binding domain-containing protein [Yersinia kristensenii ATCC 33638] gb|EEP89666.1| AraC-type DNA-binding domain-containing protein [Yersinia kristensenii ATCC 33638] Length = 269 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 105/252 (41%), Positives = 153/252 (60%), Gaps = 1/252 (0%) Query: 21 IRARHEQQLRQVFIGLASICHVRQGKKRMQWGHRHLLCGQDVLVLIAAGTQVNVANLPKG 80 I AR L +V + ++CHVRQG K +QWG + GQ L+L AGT+V++AN+P Sbjct: 16 IVARRAHTLHRVTVFSPALCHVRQGSKLVQWGSQAASAGQSTLILFPAGTEVSIANMPDR 75 Query: 81 GEYAADMVSLPPALIERFRLHYPGQGVQARDASAVSSVAQDADILRAWRHLQDCIREEAA 140 G Y +DMV LP +++ +FR Y V A +A V DA+ RAW L ++ A Sbjct: 76 GHYCSDMVYLPQSVLRQFRQWYGALAV-APVTTASLCVPLDANTRRAWDSLLLNLKNHAP 134 Query: 141 SELQCQAAEGLLLALSLRGAIGGLLRERGDAISHHIEQHLLMLAPEERSLERVAEAFHCS 200 L AA G+LLAL L G G LL +R D ++ ++Q +L+ + S+ VA+ H Sbjct: 135 DALSQHAAMGVLLALHLAGQAGSLLIDRRDKLAEQVQQIILLDPARDWSVSDVAQTLHMG 194 Query: 201 VSTLRRRLAREQTGFRELLDKVQLGLALDQLQASSLPIADIASACGYDSPSRFAMRFRQH 260 STLRR+L +E+ FR +L++V++G AL LQ +SLPI +IA+ GY S SRF RF+QH Sbjct: 195 DSTLRRKLMQEERQFRVILEEVRMGCALHALQTTSLPIGEIAARHGYISASRFTSRFQQH 254 Query: 261 YGISPSELRQTL 272 +G++PS LR+ + Sbjct: 255 FGLTPSRLREAI 266 >ref|ZP_04632156.1| AraC-type DNA-binding domain-containing protein [Yersinia frederiksenii ATCC 33641] gb|EEQ15254.1| AraC-type DNA-binding domain-containing protein [Yersinia frederiksenii ATCC 33641] Length = 269 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 105/252 (41%), Positives = 150/252 (59%), Gaps = 1/252 (0%) Query: 21 IRARHEQQLRQVFIGLASICHVRQGKKRMQWGHRHLLCGQDVLVLIAAGTQVNVANLPKG 80 I AR LR+V I ++CHVRQG K +QWG + GQ L+L AG +V++AN P Sbjct: 16 IVARRAHTLRRVTIFAPALCHVRQGSKLVQWGAQTANAGQSTLILFPAGAEVSIANTPDR 75 Query: 81 GEYAADMVSLPPALIERFRLHYPGQGVQARDASAVSSVAQDADILRAWRHLQDCIREEAA 140 G Y +DMV LP L+ +FR Y G SA V D D RAW +L ++ +A Sbjct: 76 GHYCSDMVYLPQELLRQFRQWY-GALAATPVTSASLCVPLDTDTHRAWENLLLNLKSQAP 134 Query: 141 SELQCQAAEGLLLALSLRGAIGGLLRERGDAISHHIEQHLLMLAPEERSLERVAEAFHCS 200 + L +A G+LLAL L G G LL +R D ++ ++Q L+ + S+ VA+ H Sbjct: 135 NVLLQHSAMGVLLALHLAGQAGPLLIDRRDKLAEQVQQIFLLDPARDWSVSDVAQTLHMG 194 Query: 201 VSTLRRRLAREQTGFRELLDKVQLGLALDQLQASSLPIADIASACGYDSPSRFAMRFRQH 260 STLRR+L +E+ FR +L++V++G AL LQ +SL I +IA+ GY SPSRF RF+QH Sbjct: 195 DSTLRRKLMQEERQFRVILEEVRMGCALHALQTTSLSIGEIAAQHGYISPSRFTSRFQQH 254 Query: 261 YGISPSELRQTL 272 +G++P LR+ + Sbjct: 255 FGLTPRRLREAI 266