BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3391.p         (50 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001354312.1| hypothetical protein mma_2622 [Janthinobacte...    77   8e-13
ref|YP_001416650.1| TPR repeat-containing protein [Xanthobacter ...    72   4e-11
ref|ZP_03545112.1| tetratricopeptide TPR_4 [Comamonas testostero...    71   6e-11
ref|YP_001526138.1| TPR repeat-containing protein [Azorhizobium ...    70   7e-11
gb|EFV87210.1| TPR repeat-containing protein [Achromobacter xylo...    70   1e-10

>ref|YP_001354312.1| hypothetical protein mma_2622 [Janthinobacterium sp. Marseille]
 gb|ABR91118.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 839

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/50 (66%), Positives = 40/50 (80%)

Query: 1   MGPGVNLRYWFRGDRYHAPRSYVDLSLQYRWRVGGDERAQGFFFSTTLSY 50
           MGPGVN+RYWFR D Y AP+SYVD SLQYR+++ GD+RA+G    TT SY
Sbjct: 790 MGPGVNVRYWFREDHYKAPQSYVDFSLQYRFKLWGDDRAEGVVLRTTFSY 839


>ref|YP_001416650.1| TPR repeat-containing protein [Xanthobacter autotrophicus Py2]
 gb|ABS66993.1| TPR repeat-containing protein [Xanthobacter autotrophicus Py2]
          Length = 1157

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/49 (61%), Positives = 37/49 (75%)

Query: 2    GPGVNLRYWFRGDRYHAPRSYVDLSLQYRWRVGGDERAQGFFFSTTLSY 50
            GPG  LRYWF  D Y APRSY+DL+LQYR+++ GD+RA+G F    LSY
Sbjct: 1109 GPGATLRYWFNEDEYTAPRSYLDLTLQYRFKLAGDDRAEGIFAGAFLSY 1157


>ref|ZP_03545112.1| tetratricopeptide TPR_4 [Comamonas testosteroni KF-1]
 gb|EED69398.1| tetratricopeptide TPR_4 [Comamonas testosteroni KF-1]
          Length = 916

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 37/49 (75%)

Query: 2   GPGVNLRYWFRGDRYHAPRSYVDLSLQYRWRVGGDERAQGFFFSTTLSY 50
           G GVN+R+WFR DR HAPRSY+DLSLQYR R+ GDER +G F    L +
Sbjct: 868 GVGVNMRFWFREDRDHAPRSYLDLSLQYRARLAGDERGKGVFLRAALVF 916


>ref|YP_001526138.1| TPR repeat-containing protein [Azorhizobium caulinodans ORS 571]
 dbj|BAF89220.1| TPR repeat protein [Azorhizobium caulinodans ORS 571]
          Length = 1154

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/49 (57%), Positives = 37/49 (75%)

Query: 2    GPGVNLRYWFRGDRYHAPRSYVDLSLQYRWRVGGDERAQGFFFSTTLSY 50
            GPG+N+RYWFR D YHAP SY DL+ QYR+++ GD+R +G F    +SY
Sbjct: 1106 GPGLNIRYWFREDVYHAPMSYFDLTFQYRFKLAGDDRGEGLFAGAVVSY 1154


>gb|EFV87210.1| TPR repeat-containing protein [Achromobacter xylosoxidans C54]
          Length = 778

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/51 (62%), Positives = 40/51 (78%), Gaps = 2/51 (3%)

Query: 2   GPGVNLRYWFRGDRYHAPRSYVDLSLQYRWRVGGDE--RAQGFFFSTTLSY 50
           GPG NLRYWFR D Y+APRSY+DL+ QYR+ +GG +  RA+G F + TLSY
Sbjct: 728 GPGFNLRYWFREDHYNAPRSYLDLTTQYRFNIGGGQADRAKGLFINLTLSY 778