BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3390.p (549 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001354312.1| hypothetical protein mma_2622 [Janthinobacte... 182 1e-43 ref|YP_004791141.1| hypothetical protein BurJV3_0581 [Burkholder... 127 4e-27 ref|YP_003276767.1| hypothetical protein CtCNB1_0725 [Comamonas ... 117 5e-24 ref|YP_002026956.1| TPR repeat-containing protein [Stenotrophomo... 110 5e-22 ref|YP_001970606.1| hypothetical protein Smlt0713 [Stenotrophomo... 102 2e-19 >ref|YP_001354312.1| hypothetical protein mma_2622 [Janthinobacterium sp. Marseille] gb|ABR91118.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 839 Score = 182 bits (463), Expect = 1e-43, Method: Composition-based stats. Identities = 176/518 (33%), Positives = 251/518 (48%), Gaps = 28/518 (5%) Query: 32 ELPLSGPAYRLAQQAYASAARGAFGQAQAQLQEAIRLRPDSMALRRQLRELRQQQRGGMS 91 ELPLSGPAY +A AY S ARG + QA Q +EA+RLRPD LR+ + QR Sbjct: 26 ELPLSGPAYEMADAAYKSYARGDYAQAVQQAKEAVRLRPDVARLRQLQAQAEAAQRSQQP 85 Query: 92 AGR------GTARDPGYAAAAAAYRAYDGKRYEQAVTLARQAVAAAPHNTAYWLLLGNAL 145 A A +P Y+AA AY+AY K Y AV+ A+QAV AP N+AYW LL N+ Sbjct: 86 AATPVPVKAKAAGNPAYSAADKAYKAYAAKNYAGAVSHAQQAVRLAPANSAYWTLLINSQ 145 Query: 146 IETHDYDRASEVLAQGADNVTDQRPLLRRQLELQRERAAMAAAEVFRAQADNHTETELDA 205 + + A + + + R++ + + A A A+ ++A + +A Sbjct: 146 LAAQRLNDADQSVNEALQRFGPNSSFARQRAVVNQGLAEQAGAQTYQALQEQDFTRAANA 205 Query: 206 ARRAVALAPQEMEYRLMLVIALLHNEQIAQAERAADEAHAMDERQPGPLLLRAYARVRLG 265 A+RAV+ AP+ YRL+LV +LL ++ +AE+A P L+ R Y R R Sbjct: 206 AQRAVSYAPERRVYRLLLVQSLLSANRLEEAEQALAPL-LQKGNDPVALVWRGYIRQRQN 264 Query: 266 QADAARADFTQAGQLASSDSSRAEHLDARLLQADAELAMQQPQAALDVLNDLDPDTLSPA 325 Q AA ADFTQA L + + E ++ RL+ ADA L+ +P A L+VL LD + + A Sbjct: 265 QRAAASADFTQALSL-RGELTTEEMVNLRLIVADAGLSAGEPDATLEVLQTLDGNA-AVA 322 Query: 326 IDARQAARLRLTRQQATQALGRYRLAALGAGQRNPSVSSRQYPVPALDCSRDGAENVNPC 385 R AA LRL + Q G + P+P+L C G N C Sbjct: 323 ARKRSAAELRLRQAQQGNIAGNTAM-----------------PLPSLRCRSTG--NTEVC 363 Query: 386 HVTFGAQARDAGFDAAARGYQAMQQQQYAQAAQAANEAVALSPQNAEYRLLLIDALQAGG 445 + GA D F +A Y+A+ + Y A A EA+ SP N Y+LLL++ L G Sbjct: 364 SLVPGAAPADPAFASADAAYKALAKNDYPLALGKAREALQQSPGNPAYQLLLVNILSRDG 423 Query: 446 QDQQAEQAISATLQAQGADGPLLARRAALRAQLGDSAGARADGEAALAQGGLPAETEIAL 505 Q AE+ + L+ D L A+R +R LG ++ A D + L +I + Sbjct: 424 QLDAAEREATLALEQGNRDPELRAQRGRVRQALGKASSADEDFKQVLQSQQASLPLQIEM 483 Query: 506 LARTGHPREARERFLAARDGGALDASCRPAVACLPPAA 543 L+R G EAR+RF A + GA + +A L A Sbjct: 484 LSRLGQRDEARQRFNAGLEAGAFAGMSKVELAYLAATA 521 >ref|YP_004791141.1| hypothetical protein BurJV3_0581 [Burkholderia sp. JV3] gb|AEM49915.1| hypothetical protein BurJV3_0581 [Burkholderia sp. JV3] Length = 944 Score = 127 bits (320), Expect = 4e-27, Method: Composition-based stats. Identities = 172/542 (31%), Positives = 240/542 (44%), Gaps = 65/542 (11%) Query: 7 SLLLLLLVSGAAATTGTALAQTAVVELPLSGPAYRLAQQAYASAARGAFGQAQAQLQEAI 66 + LL +++ A A+ T + A LPLSG AYR+A+QA+A+ RG + A Q EAI Sbjct: 3 TTLLSTVIAVALASVATPVLAQADAALPLSGAAYRIAEQAFAAYERGDYPAAYQQSTEAI 62 Query: 67 RLRPDSMALRR----------QLRELRQQQRGGMSAGR---------------------- 94 RLRPD + LR + E +QQ R + AG Sbjct: 63 RLRPDVVRLRLLQIYALQKLGRGAEAQQQARRALDAGLKDPALPALAAATAARSAATGGE 122 Query: 95 -----------GTARD----PGYAAAAAAYRAYDGKRYEQAVTLARQAVAAAPHNTAYWL 139 G+A D YA A AY AYD R +A A QA P A+ L Sbjct: 123 GARTTSPSRPVGSAADRSGQQAYALATEAYAAYDAGRMGEAAGKAEQAFRQQPTQGAWAL 182 Query: 140 LLGNALIETHDYDRASEVLAQGAD-NVTDQRPLLRRQLELQRERAAMAAAEVFRAQADNH 198 L AL ++A +A + L R++ L R+RA + A + +R+ + Sbjct: 183 LWVAALEAQQQPEQADAAIATALQLGAPNAEALQARRVTLDRQRALLQAQQAYRSLSTQD 242 Query: 199 TETELDAARRAVALAPQEMEYRLMLVIALLHNEQIAQAERAADEAHAMDERQPGPLLLRA 258 + AR AV LAP+ YRL+L+ A L Q+A AER+AD+A D + ++R Sbjct: 243 DAAAVAQARAAVELAPEVATYRLLLITAQLQQGQLADAERSADQALQADGQDLNARVMRG 302 Query: 259 YARVRLGQADAARADFTQAGQLASSDSSRAEHLDARLLQADAELAMQQPQAALDVLNDLD 318 Y R R G A DF A ++ S + + RLL DA LA A +L L Sbjct: 303 YLRQRQGNTVLANQDFDTA---LAAPGSTTQQRNVRLLAVDAALASADRMRAAALLAPLQ 359 Query: 319 PDTLSPAIDARQAARLRLTRQQATQALGRYRLAALGAGQRNPSVSSRQYPVPALDCSRDG 378 + A DAR L QQA + GR A+ + + P +S++ YP P C G Sbjct: 360 SALPTDAGDARAQQLL----QQAIEQRGR----AIRSSRALPRISAQTYPAPFQHCQSGG 411 Query: 379 AENVNPCHVTFGAQARDAGFDAAARGYQAMQQQQYAQAAQAANEAVALSPQNAEYRLLLI 438 NV C + D G AA R Y A +Q YA+A A +AV +P +A+ + LL Sbjct: 412 TGNV--CELMPADLQGDGG--AAQRAYAAYARQDYAEAIGEARQAVQRAPDDAKLQGLLT 467 Query: 439 DALQAGGQDQQ--AEQAISATLQAQGADGPLLARRAALRAQLGDSAGARADGEAALAQGG 496 L +G + QQ A Q + A L + D L +R L + + A A AD AA A G Sbjct: 468 TTLASGNRAQQDEARQRLDAALAQRPDDAEALMQRGYLNQKAHEPAQALADFRAAEATGK 527 Query: 497 LP 498 P Sbjct: 528 AP 529 >ref|YP_003276767.1| hypothetical protein CtCNB1_0725 [Comamonas testosteroni CNB-2] gb|ACY31471.1| hypothetical protein CtCNB1_0725 [Comamonas testosteroni CNB-2] Length = 892 Score = 117 bits (294), Expect = 5e-24, Method: Composition-based stats. Identities = 140/446 (31%), Positives = 204/446 (45%), Gaps = 30/446 (6%) Query: 97 ARDPGYAAAAAAYRAYDGKRYEQAVTLARQAVAAAPHNTAYWLLLGNALIETHDYDRASE 156 A GYA A+ AY A + + + A+ LARQAVAAAP Y LL L+E +D A E Sbjct: 154 AMPAGYAKASQAYAATERRDFATALPLARQAVAAAPGRLDYQRLLVYLLVENGRFDEA-E 212 Query: 157 VLAQGADNVTDQRPLLRRQL---ELQRERAAMAAAEVFRAQADNHTETELDAARRAVALA 213 A D V + Q+ +++ RA + +A+ L A +V A Sbjct: 213 ARATRLDKVKQLQSDSDWQMLRTSIRQRRALRPFEQALQAREQGDMAKALRYAETSVRTA 272 Query: 214 PQEMEYRLMLVIALLHNEQIAQAERAADEAHAMDERQPGPLLLRAYARVRLGQADAARAD 273 P + RL + LL + Q AQA+R A++ A+ + P +L+ A G+ A+ Sbjct: 273 PDALAPRLQWLGLLLQDGQAAQAQRVAEQGLAL-QHDPALQVLQGVALHVQGRGMASEQA 331 Query: 274 FTQAGQLASSDSSRAEHLDARLLQADAELAMQQPQAALDVLNDLDPDTLSPAIDARQAAR 333 F A LA+ SR+E + ++ DA LA Q + A ++ L+ D+ + RQ + Sbjct: 332 FDAA--LAAPHLSRSERQNYGVIALDAALAAGQTERAQRLVQALETDSNADISSRRQ--Q 387 Query: 334 LRLTRQQATQALGRYRLAALGAGQRNPSVSSRQYPVPALDCSRDGAENVNPCHVTFGAQA 393 L++ R S + P+P ++C G +V C + G +A Sbjct: 388 LKMLRSSTMS-------------------RSYELPLPLVNCFSAG--DVPGCEIWPGQEA 426 Query: 394 RDAGFDAAARGYQAMQQQQYAQAAQAANEAVALSPQNAEYRLLLIDALQAGGQDQQAEQA 453 D + A YQA QYA AA+ A AV L+P + YR L + AL A GQ QA + Sbjct: 427 PDPAYKVAHEAYQAYSDGQYALAAEKAGAAVQLNPGHLPYRQLRLQALLAAGQKAQALEE 486 Query: 454 ISATLQAQGADGPLLARRAALRAQLGDSAGARADGEAALAQGGLPAETEIALLARTGHPR 513 + TLQ Q +LA R+ LR + G + A AD AL GGL +E+ LL + G Sbjct: 487 VDQTLQLQPDAAEVLALRSRLRHEQGMTEAANADARTALQMGGLSLSSEVDLLLQLGRRD 546 Query: 514 EARERFLAARDGGALDASCRPAVACL 539 EA RF A L S P +A L Sbjct: 547 EAAARFAQAVSEPELQQSADPNLAYL 572 >ref|YP_002026956.1| TPR repeat-containing protein [Stenotrophomonas maltophilia R551-3] gb|ACF50273.1| TPR repeat-containing protein [Stenotrophomonas maltophilia R551-3] Length = 940 Score = 110 bits (276), Expect = 5e-22, Method: Composition-based stats. Identities = 164/515 (31%), Positives = 226/515 (43%), Gaps = 67/515 (13%) Query: 33 LPLSGPAYRLAQQAYASAARGAFGQAQAQLQEAIRLRPDSMALRR-QLRELRQQQRGGMS 91 LPLSG AYR+A+QA+A+ RG + A Q EAIRLRPD + LR Q+ L++ RG + Sbjct: 29 LPLSGAAYRIAEQAFAAYERGDYPAAYQQSSEAIRLRPDVVRLRLLQIYALQKLGRGAEA 88 Query: 92 AGR--------------------------GTARDPG----------------YAAAAAAY 109 R G AR Y A AY Sbjct: 89 QQRARRALDAGMKDPALPALAAAVPKTTTGAARSAALPRASATAADRNSRQAYLLATEAY 148 Query: 110 RAYDGKRYEQAVTLARQAVAAAPHNTAYWLLLGNALIETHDYDRA----SEVLAQGADNV 165 AYD + A + A QA P A+ LL AL ++A S L GA NV Sbjct: 149 AAYDAGQMGIAASKAEQAFRQQPKQGAWALLWVAALEAQQQPEQADVAISTALQLGAPNV 208 Query: 166 TDQRPLLRRQLELQRERAAMAAAEVFRAQADNHTETELDAARRAVALAPQEMEYRLMLVI 225 + R R++ L R+RA + A + +R+ + + AR AV LAP+ YRL+L+ Sbjct: 209 EELRA---RRVVLTRQRALLLAQQAYRSLSAGDDAAAIGHARDAVKLAPEVASYRLLLIT 265 Query: 226 ALLHNEQIAQAERAADEAHAMDERQPGPLLLRAYARVRLGQADAARADFTQAGQLASSDS 285 A L +Q+A AE +AD+A +D ++R Y R R G A DF A ++ Sbjct: 266 AQLQGDQLADAEHSADQALQVDANDLNARVMRGYLRQRQGSTLRANEDFDAA---LATPG 322 Query: 286 SRAEHLDARLLQADAELAMQQPQAALDVLNDLDPDTLSPAIDARQAARLRLTRQQATQAL 345 S A+ + RLL DA LA A +L L + DAR L+ +Q Sbjct: 323 STAQQRNVRLLAVDAALAAGDRVRAAALLAPLQAPVPADEKDARAQLLLQQGIEQ----- 377 Query: 346 GRYRLAALGAGQRNPSVSSRQYPVPALDCSRDGAENVNPCHVTFGAQARDAGFDAAARGY 405 R A+ + + P +S+ YP P C + NV C + D G AA R Y Sbjct: 378 ---RAKAISSSRALPRISAEAYPAPVQHCQSGDSSNV--CELMPADLQGDGG--AAQRAY 430 Query: 406 QAMQQQQYAQAAQAANEAVALSPQNAEYRLLLIDALQAGGQDQQ--AEQAISATLQAQGA 463 A ++ YA A A +AV L+P++ + LL AL AG + QQ A Q + A L Sbjct: 431 AAYARRDYADAIGEARQAVQLAPEDVNLQGLLTTALAAGNRVQQDEARQRLDAALAQHPD 490 Query: 464 DGPLLARRAALRAQLGDSAGARADGEAALAQGGLP 498 D L +R L + + A A AD AA A G P Sbjct: 491 DAGALMQRGYLNQKAREPARALADFHAAEATGKAP 525 >ref|YP_001970606.1| hypothetical protein Smlt0713 [Stenotrophomonas maltophilia K279a] emb|CAQ44292.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a] Length = 939 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 170/546 (31%), Positives = 235/546 (43%), Gaps = 70/546 (12%) Query: 1 MKNKTLSLLLLLLVSGAAATTGTALAQTAVVELPLSGPAYRLAQQAYASAARGAFGQAQA 60 MK LS ++ + ++ AAA LAQT LPLSG AYR+A+QA+A+ RG + A Sbjct: 1 MKTTLLSTVITVALATAAAPV---LAQTDA-PLPLSGAAYRIAEQAFAAYERGDYPAAYR 56 Query: 61 QLQEAIRLRPDSMALRR----------QLRELRQQQRGGMSAG----------------R 94 Q EAIRLRPD + LR + E +QQ R + AG R Sbjct: 57 QSSEAIRLRPDVVRLRLLQIYALQKLGRGAEAQQQARRALDAGLKDPALPALAAAPRTRR 116 Query: 95 GTARD----------------PGYAAAAAAYRAYDGKRYEQAVTLARQAVAAAPHNTAYW 138 G AR Y A AY AYD + A + A QA P A+ Sbjct: 117 GAARTGAVPRAPATVTDRNSRQAYMLATEAYAAYDAGQMGVAASKAEQAFRQQPQQGAWA 176 Query: 139 LLLGNALIETHDYDRASEVLAQ----GADNVTDQRPLLRRQLELQRERAAMAAAEVFRAQ 194 LL AL +A + GA NV + R R++ L R+RA + A + +++ Sbjct: 177 LLWVAALEAQQQPGQADAAIGTALQLGAPNVEELRA---RRVALGRQRALLLAQQAYQSL 233 Query: 195 ADNHTETELDAARRAVALAPQEMEYRLMLVIALLHNEQIAQAERAADEAHAMDERQPGPL 254 + ++ A AV LAP YRL+L+ A L +Q+A AE +AD A +D Sbjct: 234 SAGENAAAIEQAHAAVELAPDVASYRLLLITAQLQGDQLADAEHSADAALQVDANDLNAR 293 Query: 255 LLRAYARVRLGQADAARADFTQAGQLASSDSSRAEHLDARLLQADAELAMQQPQAALDVL 314 ++R Y R R G A DF A ++ S + + RLL DA LA A +L Sbjct: 294 VMRGYLRQRQGNTVLANEDFDTA---LAAPGSATQQRNVRLLAVDAALAAGDRVRAAALL 350 Query: 315 NDLDPDTLSPAIDARQAARLRLTRQQATQALGRYRLAALGAGQRNPSVSSRQYPVPALDC 374 L + DAR QQ Q R A+ + + P + + Y P C Sbjct: 351 APLQAAVPAGEGDARS--------QQLLQQGIEQRSRAIRSSRELPRIGAEAYLAPVQHC 402 Query: 375 SRDGAENVNPCHVTFGAQARDAGFDAAARGYQAMQQQQYAQAAQAANEAVALSPQNAEYR 434 ++ + C + D G AA R Y A +Q YA A A +AV L+P +A + Sbjct: 403 Q--SVDSGSLCELMPADLQGDGG--AAQRAYAAYARQDYADAIGEARQAVQLAPDDANLQ 458 Query: 435 LLLIDALQAGGQDQQ--AEQAISATLQAQGADGPLLARRAALRAQLGDSAGARADGEAAL 492 LL L AG + QQ A Q + A L + D L +R L + + A A AD AA Sbjct: 459 GLLTTTLAAGNRAQQDEARQRLDAALAQRPDDAGALMQRGYLNQKAHEPARALADFRAAE 518 Query: 493 AQGGLP 498 A G P Sbjct: 519 ATGKAP 524