BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3384.p         (273 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776290.1| effector of murein hydrolase LrgA protein [H...   158   9e-37
ref|YP_001115754.1| LrgA family protein [Burkholderia vietnamien...   110   3e-22
ref|YP_001815832.1| LrgA family protein [Burkholderia ambifaria ...   104   1e-20
ref|ZP_02889322.1| LrgA family protein [Burkholderia ambifaria I...    99   8e-19
ref|YP_001586010.1| LrgA family protein [Burkholderia multivoran...    98   1e-18

>ref|YP_003776290.1| effector of murein hydrolase LrgA protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ64382.1| effector of murein hydrolase LrgA protein [Herbaspirillum
           seropedicae SmR1]
          Length = 122

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 91/115 (79%), Positives = 98/115 (85%), Gaps = 4/115 (3%)

Query: 158 VFQCLGEGTAQLLGLPIPGPVIGMLMLLIAFLSSSRLAQLMEPTSWGILQHLSLLFVPAG 217
           +FQCLGEG AQLLGLP+PGPVIGML LL++FL+  RLA LME TSWGILQHLSLLFVPAG
Sbjct: 11  IFQCLGEGAAQLLGLPVPGPVIGMLFLLLSFLAYPRLADLMEATSWGILQHLSLLFVPAG 70

Query: 218 VGVIAAAGQLKGDLPAIAVALVVSTVLAIAVGALVTNAAMKRFSAARQPDHDEES 272
           VGV+AAAGQL+GDL AI VALVVSTVLAIAVGALVT AAMKR S       DEES
Sbjct: 71  VGVMAAAGQLQGDLAAIVVALVVSTVLAIAVGALVTQAAMKRLSRPA----DEES 121


>ref|YP_001115754.1| LrgA family protein [Burkholderia vietnamiensis G4]
 gb|ABO59499.1| LrgA family protein [Burkholderia vietnamiensis G4]
          Length = 123

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 61/110 (55%), Positives = 83/110 (75%)

Query: 150 LTPLAILLVFQCLGEGTAQLLGLPIPGPVIGMLMLLIAFLSSSRLAQLMEPTSWGILQHL 209
           L   A+LL FQCLGEG + L G+P+PGPVIGML+L    +   ++A  +EPT++ +L+HL
Sbjct: 2   LQAFAVLLTFQCLGEGVSYLFGIPVPGPVIGMLLLFGFVMLRPQVADAIEPTAFELLRHL 61

Query: 210 SLLFVPAGVGVIAAAGQLKGDLPAIAVALVVSTVLAIAVGALVTNAAMKR 259
           SLLFVPAGVG++ +A +++GD  A+ VAL VST LAIAV ALVT A ++R
Sbjct: 62  SLLFVPAGVGIMVSASRVRGDALAVVVALAVSTTLAIAVTALVTRALLRR 111


>ref|YP_001815832.1| LrgA family protein [Burkholderia ambifaria MC40-6]
 gb|ACB68279.1| LrgA family protein [Burkholderia ambifaria MC40-6]
          Length = 123

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/110 (57%), Positives = 82/110 (74%)

Query: 150 LTPLAILLVFQCLGEGTAQLLGLPIPGPVIGMLMLLIAFLSSSRLAQLMEPTSWGILQHL 209
           L   A+LL FQCLGEG + L GLP+PGPVIGML+L    +   R+A  +EPT+  +L+HL
Sbjct: 2   LQAFAVLLTFQCLGEGVSYLFGLPVPGPVIGMLLLFGFVMLRPRVADAIEPTALELLRHL 61

Query: 210 SLLFVPAGVGVIAAAGQLKGDLPAIAVALVVSTVLAIAVGALVTNAAMKR 259
           SLLFVPAGVG++ +A +++GD  A+ VAL VST LAIAV ALVT A ++R
Sbjct: 62  SLLFVPAGVGIMVSADRVRGDALAVIVALAVSTSLAIAVTALVTRALLRR 111


>ref|ZP_02889322.1| LrgA family protein [Burkholderia ambifaria IOP40-10]
 gb|EDT05077.1| LrgA family protein [Burkholderia ambifaria IOP40-10]
          Length = 123

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 63/110 (57%), Positives = 82/110 (74%)

Query: 150 LTPLAILLVFQCLGEGTAQLLGLPIPGPVIGMLMLLIAFLSSSRLAQLMEPTSWGILQHL 209
           L   A+LL FQCLGEG + L GLP+PGPVIGML+L    +   R+A  +EPT+  +L+HL
Sbjct: 2   LQAFAVLLTFQCLGEGVSYLFGLPVPGPVIGMLLLFGFVMLRPRVADAIEPTALELLRHL 61

Query: 210 SLLFVPAGVGVIAAAGQLKGDLPAIAVALVVSTVLAIAVGALVTNAAMKR 259
           SLLFVPAGVG++ +A +++GD  A+ VAL VST LAIAV ALVT A ++R
Sbjct: 62  SLLFVPAGVGIMVSADRVRGDAVAVVVALAVSTTLAIAVTALVTRALLRR 111


>ref|YP_001586010.1| LrgA family protein [Burkholderia multivorans ATCC 17616]
 ref|YP_001941289.1| holin-like protein [Burkholderia multivorans ATCC 17616]
 ref|ZP_03572044.1| LrgA [Burkholderia multivorans CGD2M]
 ref|ZP_03578275.1| LrgA [Burkholderia multivorans CGD2]
 ref|ZP_03585100.1| LrgA [Burkholderia multivorans CGD1]
 gb|ABX19718.1| LrgA family protein [Burkholderia multivorans ATCC 17616]
 dbj|BAG47299.1| holin-like protein [Burkholderia multivorans ATCC 17616]
 gb|EEE00676.1| LrgA [Burkholderia multivorans CGD1]
 gb|EEE07481.1| LrgA [Burkholderia multivorans CGD2]
 gb|EEE13852.1| LrgA [Burkholderia multivorans CGD2M]
          Length = 123

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 64/110 (58%), Positives = 84/110 (76%)

Query: 150 LTPLAILLVFQCLGEGTAQLLGLPIPGPVIGMLMLLIAFLSSSRLAQLMEPTSWGILQHL 209
           L   A+LL FQCLGEG + L GLP+PGPVIGML+L    +   ++A  +EPT+  +L+HL
Sbjct: 2   LQAFAVLLTFQCLGEGVSYLFGLPVPGPVIGMLLLFGFAMLRPQVADAIEPTALELLRHL 61

Query: 210 SLLFVPAGVGVIAAAGQLKGDLPAIAVALVVSTVLAIAVGALVTNAAMKR 259
           SLLFVPAGVG++ +AG+++GD  A+ VALVVST LAIAV ALVT A ++R
Sbjct: 62  SLLFVPAGVGIMVSAGRVRGDAVAVVVALVVSTTLAIAVTALVTRALLRR 111