BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3381.p (398 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776288.1| LysR family transcription regulator protein ... 578 e-163 ref|YP_050476.1| LysR family transcriptional regulator [Pectobac... 325 6e-87 ref|ZP_04763582.1| transcriptional regulator, LysR family [Acido... 321 2e-85 ref|ZP_08019598.1| LysR family transcriptional regulator [Lautro... 304 2e-80 ref|ZP_08566615.1| transcriptional regulator, LysR family [Shewa... 304 2e-80 >ref|YP_003776288.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64380.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 578 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 278/302 (92%), Positives = 292/302 (96%) Query: 91 MDKLQAMETFVAVVESGSFVAAVEVTGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTD 150 MDKLQAM+TFVAVVESGSFVAAV+VTGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTD Sbjct: 1 MDKLQAMQTFVAVVESGSFVAAVDVTGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTD 60 Query: 151 EGRVYFTRCKELLESIQDVESEVGLNSDQACGRLRIGAPQDFGVEQLAPLWGKFTEQNPQ 210 EGRVYF RCKELLE+IQDVESEVGLNSDQACGRLRIGAPQDFGVEQLAPLWGKFTEQ+P Sbjct: 61 EGRVYFARCKELLETIQDVESEVGLNSDQACGRLRIGAPQDFGVEQLAPLWGKFTEQHPL 120 Query: 211 ITLNITLSDRTIDLLEEGFDMAIRISTLGDSRMVARPLAPVRMIACASPAFLQRHGTPVS 270 ITLNITLSDRTIDLLEEGFDMAIRIS LGDSRMVARPLAPVRMIACA+P FL RHGTP + Sbjct: 121 ITLNITLSDRTIDLLEEGFDMAIRISALGDSRMVARPLAPVRMIACAAPEFLARHGTPGT 180 Query: 271 PAELRDYPFISYSYRNGGDEWHFKHEHGDTCTVRVRSTVYVNNGATCRAMAVAGQGIAIQ 330 PAELRDYPFISYSYR GGD+W F+H HGDTC VRVRSTVYVNNGATCRAMA+AGQGIAIQ Sbjct: 181 PAELRDYPFISYSYRAGGDDWSFRHVHGDTCQVRVRSTVYVNNGATCRAMAIAGQGIAIQ 240 Query: 331 PDFIVNAAIQSGELVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFLVEQFKVPPWC 390 PDFIVNAAIQ+G+LVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFL+EQF+VPPWC Sbjct: 241 PDFIVNAAIQAGQLVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFLIEQFRVPPWC 300 Query: 391 PK 392 P+ Sbjct: 301 PR 302 >ref|YP_050476.1| LysR family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] emb|CAG75284.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum SCRI1043] Length = 310 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 158/296 (53%), Positives = 209/296 (70%), Gaps = 1/296 (0%) Query: 94 LQAMETFVAVVESGSFVAAVEVTGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTDEGR 153 +QAM TFVAVV++GSFV A+E TG SKPAVSRQV ELE+FLG+RLLHRTTRR+SLT EG Sbjct: 1 MQAMTTFVAVVKAGSFVKAMESTGFSKPAVSRQVIELEKFLGVRLLHRTTRRISLTSEGE 60 Query: 154 VYFTRCKELLESIQDVESEVGLNSDQACGRLRIGAPQDFGVEQLAPLWGKFTEQNPQITL 213 Y+ RCKE+L I++ E++V ++QA GRLRIG PQDFGV QL PLW +F ++NP++ L Sbjct: 61 TYYQRCKEVLSVIEEAENQVCARANQAHGRLRIGVPQDFGVLQLTPLWAQFMDRNPKVEL 120 Query: 214 NITLSDRTIDLLEEGFDMAIRISTLGDSRMVARPLAPVRMIACASPAFLQRHGTPVSPAE 273 +I LSDR +D +EEG+D+ +RI L DS +V+ LA R+I CASP +L+ GTP P + Sbjct: 121 DIVLSDRNVDPVEEGYDLVVRIGNLPDSTLVSSLLATTRLILCASPEYLRLRGTPTHPTD 180 Query: 274 LRDYPFISYSYRNGGDEWHFKHEHGDTCTVRVRSTVYVNNGATCRAMAVAGQGIAIQPDF 333 L + I+YSY G+EW F E + V + VN+GATCR +A+ QGI +QPDF Sbjct: 181 LDKHVVIAYSYNASGNEWLFCKEKREQIKVSTHPRLNVNSGATCRLLAIESQGIILQPDF 240 Query: 334 IVNAAIQSGELVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFLVEQFKVPPW 389 +V++ I G+LVE+ W + L +H LYPTR LP KVQ +RDFL + + PW Sbjct: 241 LVHSDIIKGKLVEIIPEWQ-AQTLEIHALYPTRILLPLKVQLLRDFLSDSLRPKPW 295 >ref|ZP_04763582.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] gb|EER59608.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN] Length = 307 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 158/299 (52%), Positives = 210/299 (70%), Gaps = 2/299 (0%) Query: 91 MDKLQAMETFVAVVESGSFVAAVEVTGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTD 150 MD LQAM T+VAVV++GSFV A++ TG SKPAVSRQV++LE LG RLL RTTRRLS+TD Sbjct: 1 MDALQAMRTYVAVVDAGSFVGAMDATGLSKPAVSRQVADLEAALGGRLLQRTTRRLSMTD 60 Query: 151 EGRVYFTRCKELLESIQDVESEVGLNSDQACGRLRIGAPQDFGVEQLAPLWGKFTEQNPQ 210 EGR Y+ RCK++L+++++ +EV ++ QA GRLRIGAP FGV LAPLWG+F +NPQ Sbjct: 61 EGRTYYQRCKDILQAVEEANAEVAASTVQAHGRLRIGAPLTFGVIHLAPLWGRFAAENPQ 120 Query: 211 ITLNITLSDRTIDLLEEGFDMAIRISTLGDSRMVARPLAPVRMIACASPAFLQRHGTPVS 270 +TL+I LSDR +DL+EEG+D+ +RI DS +++R LA M CASP +L R G P Sbjct: 121 VTLDIVLSDRVVDLVEEGYDLVVRIGRPMDSNLISRELARSGMALCASPGYLARRGIPEH 180 Query: 271 PAELRDYPFISYSYRNGGDEWHFKHEHGDTCTVRVRSTVYVNNGATCRAMAVAGQGIAIQ 330 P +L + ISYSY GDEW F+ G V V S ++ NNG TCR A+A QG+ +Q Sbjct: 181 PHDLIRHDVISYSYSRFGDEWSFEGPQGKV-IVHVNSRIHANNGDTCRVAALADQGVILQ 239 Query: 331 PDFIVNAAIQSGELVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFLVEQFKVPPW 389 PDF+V+ ++ G L++L + E L + LYPTR LP KV+++ DFLVE + PPW Sbjct: 240 PDFLVHEDLRDGRLIKLLPDFRLHE-LSIQALYPTRKQLPLKVRKLIDFLVEALRDPPW 297 >ref|ZP_08019598.1| LysR family transcriptional regulator [Lautropia mirabilis ATCC 51599] gb|EFV94331.1| LysR family transcriptional regulator [Lautropia mirabilis ATCC 51599] Length = 312 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 156/299 (52%), Positives = 207/299 (69%), Gaps = 2/299 (0%) Query: 91 MDKLQAMETFVAVVESGSFVAAVEVTGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTD 150 MDK+QAM TFVAVVE+GSFV A+ V G SK AVSR V+ELEQ L RLL RTTRRLSLT Sbjct: 1 MDKIQAMSTFVAVVEAGSFVKAMSVLGISKAAVSRHVAELEQHLETRLLQRTTRRLSLTA 60 Query: 151 EGRVYFTRCKELLESIQDVESEVGLNSDQACGRLRIGAPQDFGVEQLAPLWGKFTEQNPQ 210 EG+ YF RCKE+L ++Q+ ESE+ S +A GRLRI P FG+ LAPLW F +NPQ Sbjct: 61 EGQRYFERCKEVLAAVQEAESEIRSRSGEAYGRLRICVPYSFGILHLAPLWSTFLSENPQ 120 Query: 211 ITLNITLSDRTIDLLEEGFDMAIRISTLGDSRMVARPLAPVRMIACASPAFLQRHGTPVS 270 + L+I LSDR +DL+EEG+DMA+RI L DS +++R LA R+I CA+P +L+RHGTP Sbjct: 121 VQLDIVLSDRMVDLVEEGYDMAVRIGVLTDSALISRRLATTRLILCATPTYLERHGTPKV 180 Query: 271 PAELRDYPFISYSYRNGGDEWHFKHEHGDTCTVRVRSTVYVNNGATCRAMAVAGQGIAIQ 330 +L + I YSY EW F+ G TV+ + ++ NNG TC +A+ QGIA+Q Sbjct: 181 LKDLAHHQAIVYSYSARAGEWSFEGPDGRE-TVQSETRLFANNGDTCLRVALDHQGIALQ 239 Query: 331 PDFIVNAAIQSGELVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFLVEQFKVPPW 389 P+F+++ ++ GELV+L ++TGE+ ++ LYPTR LP KV+R+ DFL + P W Sbjct: 240 PEFMIHEHLRRGELVQLLPQYNTGER-NIYALYPTRKLLPIKVRRLVDFLARALERPVW 297 >ref|ZP_08566615.1| transcriptional regulator, LysR family [Shewanella sp. HN-41] gb|EGM69837.1| transcriptional regulator, LysR family [Shewanella sp. HN-41] Length = 292 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 147/293 (50%), Positives = 207/293 (70%), Gaps = 2/293 (0%) Query: 97 METFVAVVESGSFVAAVEVTGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTDEGRVYF 156 M+TF AVVE+GSFV A++ G SKPAVSR ++ELEQ LG RL+ RTTRRLSLT EG+ Y+ Sbjct: 1 MKTFTAVVEAGSFVGAMDSVGLSKPAVSRHIAELEQHLGSRLIQRTTRRLSLTREGQSYY 60 Query: 157 TRCKELLESIQDVESEVGLNSDQACGRLRIGAPQDFGVEQLAPLWGKFTEQNPQITLNIT 216 RCKE+L ++ + E+EVG ++ + G LRIGAPQ FG LA LWG+F +PQ+TL++ Sbjct: 61 QRCKEILSAVSEAEAEVGSSAIEVQGELRIGAPQTFGAMHLAALWGRFASLHPQVTLDVE 120 Query: 217 LSDRTIDLLEEGFDMAIRISTLGDSRMVARPLAPVRMIACASPAFLQRHGTPVSPAELRD 276 LSDR +D++EE FD+ +RI+ L DS +++R LA +M+ C+S +L + GTP P +L Sbjct: 121 LSDRIVDVVEESFDLVVRIARLPDSSLISRLLAKTKMVLCSSSEYLSKRGTPKIPEDLMK 180 Query: 277 YPFISYSYRNGGDEWHFKHEHGDTCTVRVRSTVYVNNGATCRAMAVAGQGIAIQPDFIVN 336 + ISYSY + G+ W F +G+ TV V S + N+G TCRA A+A QGI + PDF++ Sbjct: 181 HDIISYSYWSSGNTWGFLGPNGEV-TVHVNSRIRANSGDTCRAAALAHQGIVLLPDFLIY 239 Query: 337 AAIQSGELVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFLVEQFKVPPW 389 ++SG+LVEL + T E L + +YPTR LP KV+++ DFLV++F+ PPW Sbjct: 240 EDLRSGKLVELMPEYRTTE-LGIFAIYPTRKQLPLKVRKLVDFLVDEFQTPPW 291