BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3380.p (200 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776287.1| ABC transporter auxiliary component protein ... 243 1e-62 ref|ZP_07772718.1| lipoprotein [Pseudomonas fluorescens WH6] >gi... 161 6e-38 ref|YP_605903.1| lipoprotein [Pseudomonas entomophila L48] >gi|9... 157 8e-37 ref|YP_001751933.1| hypothetical protein PputW619_5088 [Pseudomo... 156 2e-36 ref|YP_001347293.1| putative lipoprotein [Pseudomonas aeruginosa... 154 6e-36 >ref|YP_003776287.1| ABC transporter auxiliary component protein [Herbaspirillum seropedicae SmR1] gb|ADJ64379.1| ABC-type uncharacterized transport system, auxiliary component protein [Herbaspirillum seropedicae SmR1] Length = 204 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 148/204 (72%), Positives = 164/204 (80%), Gaps = 4/204 (1%) Query: 1 MMTPLLRTALVTASLALTACSILPKSDPLAVYRLP-PLASPHAASTGT---PYRALRIAT 56 M T LLRT+LV ASL L ACSILPK DP AVYRLP A P AST RALRIAT Sbjct: 1 MNTLLLRTSLVAASLMLAACSILPKPDPQAVYRLPTATAMPAQASTTAGDIRLRALRIAT 60 Query: 57 PAASRSIDSERILVLPEGDVVKSYAGVRWSDPAPQLLRDRLLDAFQADGRFPRLSGDNAN 116 P A+RSIDSERILVLPEGDV+KSYAGVRWSD AP L RDRLL+AF+ADGR+ RLS D N Sbjct: 61 PYANRSIDSERILVLPEGDVIKSYAGVRWSDAAPLLWRDRLLEAFRADGRYQRLSSDTGN 120 Query: 117 IAAEVELDGALNAFQTEYRNGAPSVVIVYDARLVDTATRQQLAARRFAVVEAVAGSKVPE 176 IAA++ELDGAL+AFQTEYR+G P+VVIVYDARL+DTA RQQLA++RFA+ AV GSKVPE Sbjct: 121 IAADIELDGALSAFQTEYRHGVPTVVIVYDARLIDTANRQQLASQRFAIQRAVDGSKVPE 180 Query: 177 VVSAFGSASARLANEVVAWAATVR 200 VVSAFG A +LA EVV WAA R Sbjct: 181 VVSAFGQACDQLAKEVVNWAAAQR 204 >ref|ZP_07772718.1| lipoprotein [Pseudomonas fluorescens WH6] gb|EFQ66184.1| lipoprotein [Pseudomonas fluorescens WH6] Length = 203 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 95/180 (52%), Positives = 120/180 (66%), Gaps = 4/180 (2%) Query: 17 LTACSILPKSDPLAVYRLPPLASPHAASTGTPYR-ALRIATPAASRSIDSERILVLPEGD 75 ++ACSILPK+DP VYRL A+ A+ G P +LR+ P S +DS RI V+P GD Sbjct: 16 ISACSILPKADPSDVYRL---AATQTATQGAPVSWSLRVTKPQTSEFLDSPRIAVVPNGD 72 Query: 76 VVKSYAGVRWSDPAPQLLRDRLLDAFQADGRFPRLSGDNANIAAEVELDGALNAFQTEYR 135 ++ SYA RWSDPAP LLR+RLLD FQ DGR LS D N+ A+ EL G L AFQ+EYR Sbjct: 73 LISSYANSRWSDPAPVLLRNRLLDGFQRDGRVTLLSTDETNLQADYELGGQLQAFQSEYR 132 Query: 136 NGAPSVVIVYDARLVDTATRQQLAARRFAVVEAVAGSKVPEVVSAFGSASARLANEVVAW 195 A VVI DARLV + ++ +A+RRF V + VA +KVP VV+AFG A +L +VV W Sbjct: 133 GSAVEVVIRLDARLVRGSDQRIMASRRFEVRQPVADTKVPAVVAAFGQAGDQLNKQVVDW 192 >ref|YP_605903.1| lipoprotein [Pseudomonas entomophila L48] emb|CAK13086.1| putative lipoprotein [Pseudomonas entomophila L48] Length = 204 Score = 157 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 87/180 (48%), Positives = 120/180 (66%), Gaps = 3/180 (1%) Query: 20 CSILPKSDPLAVYRLPPLASPHAASTGTPYRALRIATPAASRSIDSERILVLPEGDVVKS 79 CSILP+ +P+ +YRLP + AS +LR+ P AS ++ RI V+P+GDV+ S Sbjct: 20 CSILPQGEPVDIYRLPVGQTARGASPLD--WSLRLNKPLASEALAGPRIAVIPQGDVISS 77 Query: 80 YAGVRWSDPAPQLLRDRLLDAFQADGRFPRLSGDNANIAAEVELDGALNAFQTEYR-NGA 138 Y G RWSDP P L+R+RLLD FQ DGR RLS D++N+ A+ EL G L AFQ EYR G+ Sbjct: 78 YKGARWSDPVPMLVRNRLLDGFQRDGRVQRLSADDSNLQADYELGGELQAFQAEYRPGGS 137 Query: 139 PSVVIVYDARLVDTATRQQLAARRFAVVEAVAGSKVPEVVSAFGSASARLANEVVAWAAT 198 VVI YDARLV +++ LA++RF V + + +VP VV+ FG+AS +LA +V+ W + Sbjct: 138 VEVVIRYDARLVQGRSQRILASKRFEVRQPLGQLQVPAVVAGFGTASDQLARQVIDWTVS 197 >ref|YP_001751933.1| hypothetical protein PputW619_5088 [Pseudomonas putida W619] gb|ACA75564.1| protein of unknown function DUF330 [Pseudomonas putida W619] Length = 207 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 91/177 (51%), Positives = 122/177 (68%), Gaps = 3/177 (1%) Query: 20 CSILPKSDPLAVYRLPPLASPHAASTGTPYRALRIATPAASRSIDSERILVLPEGDVVKS 79 CSILP+S+P+ +YRLP + H+A T P+ +LR+ P AS + RI V+P+GDVV S Sbjct: 20 CSILPQSEPVDIYRLPVNQASHSA-TPVPW-SLRLNKPLASEVLAGPRIAVIPKGDVVSS 77 Query: 80 YAGVRWSDPAPQLLRDRLLDAFQADGRFPRLSGDNANIAAEVELDGALNAFQTEYR-NGA 138 Y G RWSDP P LLR+RLLD FQ DGR RLS D++N+ A+ EL G L AFQ+EYR G Sbjct: 78 YKGARWSDPVPLLLRNRLLDGFQRDGRVQRLSADDSNLQADYELAGELQAFQSEYRPTGT 137 Query: 139 PSVVIVYDARLVDTATRQQLAARRFAVVEAVAGSKVPEVVSAFGSASARLANEVVAW 195 VVI YDARLV +++ LA++RF V + + ++V VV+ FG A+ +LA +VV W Sbjct: 138 VEVVIRYDARLVQGRSQRILASKRFEVRQPLVDTQVSAVVAGFGVANDQLAAQVVNW 194 >ref|YP_001347293.1| putative lipoprotein [Pseudomonas aeruginosa PA7] gb|ABR81914.1| lipoprotein, putative [Pseudomonas aeruginosa PA7] Length = 214 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 98/197 (49%), Positives = 126/197 (63%), Gaps = 3/197 (1%) Query: 2 MTPLLRTALVTASL---ALTACSILPKSDPLAVYRLPPLASPHAASTGTPYRALRIATPA 58 + PL R +L + L ACSILP++ L VY LP P +A +LRIA P Sbjct: 5 LRPLRRLSLAAGLVVFATLGACSILPEAQVLQVYLLPVHNPPASAVARPVDWSLRIARPR 64 Query: 59 ASRSIDSERILVLPEGDVVKSYAGVRWSDPAPQLLRDRLLDAFQADGRFPRLSGDNANIA 118 S ++S RI V P+GD + Y G RWSDPAP LLRDRL+ AFQADGR LS D++N+ Sbjct: 65 TSLVLESPRIAVRPQGDEISVYQGARWSDPAPALLRDRLMQAFQADGRVRGLSSDDSNLQ 124 Query: 119 AEVELDGALNAFQTEYRNGAPSVVIVYDARLVDTATRQQLAARRFAVVEAVAGSKVPEVV 178 A+ EL G L AFQTEY NG + +I YDARLV + ++ +A+RRF V + V G KVPEVV Sbjct: 125 ADFELGGDLRAFQTEYPNGQATALIRYDARLVRSDDKRVIASRRFEVRQPVDGRKVPEVV 184 Query: 179 SAFGSASARLANEVVAW 195 SAFG A+ L+ +V+ W Sbjct: 185 SAFGKAADTLSAQVLDW 201