BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3376.p (276 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776284.1| organic solvents resistance ABC transporter ... 441 e-122 ref|YP_257252.1| hypothetical protein PFL_0100 [Pseudomonas fluo... 356 2e-96 ref|YP_004351181.1| ABC transporter permease [Pseudomonas brassi... 353 2e-95 ref|YP_002869794.1| putative ABC transporter permease [Pseudomon... 348 5e-94 ref|YP_345770.1| hypothetical protein Pfl01_0037 [Pseudomonas fl... 348 5e-94 >ref|YP_003776284.1| organic solvents resistance ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64376.1| ABC-type transport system involved in resistance to organic solvents, permease component protein [Herbaspirillum seropedicae SmR1] Length = 380 Score = 441 bits (1133), Expect = e-122, Method: Composition-based stats. Identities = 252/276 (91%), Positives = 265/276 (96%) Query: 1 MPKAAPPPQAWITDMLERAGVATLNLRACSRGLLGFAGLCLQTLAASFWRPSRWRFTGVV 60 MPK APP QAWITDMLER G ATL+LRAC+ GLLGF GLCLQTL +SFWRPSRWR T VV Sbjct: 105 MPKPAPPRQAWITDMLERVGAATLSLRACALGLLGFMGLCLQTLLSSFWRPSRWRVTAVV 164 Query: 61 AQVEQTGLDAVPIVSLLTFMVGAVVAFLGATVLADFGASLYTVDLVAFSFLREFAVLLTA 120 AQ+EQTGLDAVPIVSLLTFMVGAVVAFLGATVLA+FGAS+YTVDLVAFSFLREFAVLLTA Sbjct: 165 AQIEQTGLDAVPIVSLLTFMVGAVVAFLGATVLANFGASIYTVDLVAFSFLREFAVLLTA 224 Query: 121 ILMAGRTASSFTAQIGSMKANEEIDAIRALGLDPINLLVLPRIIALLISMPLLTFIAMMS 180 ILMAGRTASSFTAQIGSMKANEEIDAIRALGLDPI LLVLPR+IALL++MP LTFIAM+S Sbjct: 225 ILMAGRTASSFTAQIGSMKANEEIDAIRALGLDPIKLLVLPRLIALLVAMPALTFIAMLS 284 Query: 181 GLFGGAMVCALSLDISPTMFLSLLQQDVGIRHFVLGMVKAPLFAFVIAIIGCNEGFKVSG 240 GLFGGAMVCALSLDISPTMFLSLLQQDVGIRHF+LGMVKAPLFAFV+A+IGCNEGFKVSG Sbjct: 285 GLFGGAMVCALSLDISPTMFLSLLQQDVGIRHFILGMVKAPLFAFVVAVIGCNEGFKVSG 344 Query: 241 SAQSVGQHTTSSVVQSIFVVILLDALAALFFMEMGW 276 SAQSVGQHTTSSVVQSIFVVILLDALAALFFMEMGW Sbjct: 345 SAQSVGQHTTSSVVQSIFVVILLDALAALFFMEMGW 380 >ref|YP_257252.1| hypothetical protein PFL_0100 [Pseudomonas fluorescens Pf-5] gb|AAY95517.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5] Length = 382 Score = 356 bits (914), Expect = 2e-96, Method: Composition-based stats. Identities = 197/262 (75%), Positives = 230/262 (87%) Query: 15 MLERAGVATLNLRACSRGLLGFAGLCLQTLAASFWRPSRWRFTGVVAQVEQTGLDAVPIV 74 +L R G A + + +LGF GL L+TLA RP RWR T VVA +EQTGLDA PIV Sbjct: 121 LLSRIGSAVYTVWQDTLKVLGFIGLILETLARGLLRPKRWRITPVVAHIEQTGLDAAPIV 180 Query: 75 SLLTFMVGAVVAFLGATVLADFGASLYTVDLVAFSFLREFAVLLTAILMAGRTASSFTAQ 134 +LLTF+VGAVVAFLGATVLA+FGAS++TVDLVAFSFLREF VLLTAILMAGRTAS+FTAQ Sbjct: 181 ALLTFLVGAVVAFLGATVLANFGASIFTVDLVAFSFLREFGVLLTAILMAGRTASAFTAQ 240 Query: 135 IGSMKANEEIDAIRALGLDPINLLVLPRIIALLISMPLLTFIAMMSGLFGGAMVCALSLD 194 IGSMKANEEIDAIR LGLDP+ LLVLPR++ALL+S+P+LTF+AM+SG+ GGA+VCALSLD Sbjct: 241 IGSMKANEEIDAIRTLGLDPVELLVLPRVLALLVSLPMLTFLAMLSGIVGGAVVCALSLD 300 Query: 195 ISPTMFLSLLQQDVGIRHFVLGMVKAPLFAFVIAIIGCNEGFKVSGSAQSVGQHTTSSVV 254 ISP MFLSLL D+G++HF+LG+VKAP+FAF+IA IGC EGFKVSGSA+SVG HTTSSVV Sbjct: 301 ISPAMFLSLLHSDIGVKHFLLGLVKAPIFAFLIAAIGCLEGFKVSGSAESVGAHTTSSVV 360 Query: 255 QSIFVVILLDALAALFFMEMGW 276 QSIFVVI++DA+AALFFMEMGW Sbjct: 361 QSIFVVIVIDAVAALFFMEMGW 382 >ref|YP_004351181.1| ABC transporter permease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA66177.1| Putative ABC transporter, permease component [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 382 Score = 353 bits (905), Expect = 2e-95, Method: Composition-based stats. Identities = 194/270 (71%), Positives = 231/270 (85%) Query: 7 PPQAWITDMLERAGVATLNLRACSRGLLGFAGLCLQTLAASFWRPSRWRFTGVVAQVEQT 66 P +T +L R G A + + LLGF GL L+TLA + RP RWR T +V +EQT Sbjct: 113 PQVGVLTQLLTRIGRAVEKVWQDTLQLLGFVGLILETLARNLLRPRRWRMTPMVVHIEQT 172 Query: 67 GLDAVPIVSLLTFMVGAVVAFLGATVLADFGASLYTVDLVAFSFLREFAVLLTAILMAGR 126 GLDA PIV+LLTF+VGAVVAFLGATVLADFGAS++TVDLVAFSFLREF VLLTAILMAGR Sbjct: 173 GLDAAPIVALLTFLVGAVVAFLGATVLADFGASIFTVDLVAFSFLREFGVLLTAILMAGR 232 Query: 127 TASSFTAQIGSMKANEEIDAIRALGLDPINLLVLPRIIALLISMPLLTFIAMMSGLFGGA 186 TAS+FTAQIGSMKANEEIDAIR LGLDP+ LLV+PR++ALL+++P+LTF+AM+SG+ GG Sbjct: 233 TASAFTAQIGSMKANEEIDAIRTLGLDPVELLVIPRVLALLVALPMLTFLAMLSGIIGGG 292 Query: 187 MVCALSLDISPTMFLSLLQQDVGIRHFVLGMVKAPLFAFVIAIIGCNEGFKVSGSAQSVG 246 +VCALSL ISP MFL+LLQ D+G++HF++GMVKAP+FAF+IA +GC EGFKVSGSA+SVG Sbjct: 293 VVCALSLGISPAMFLTLLQSDIGVQHFLVGMVKAPIFAFLIAAVGCLEGFKVSGSAESVG 352 Query: 247 QHTTSSVVQSIFVVILLDALAALFFMEMGW 276 HTTSSVVQSIFVVI+LDA+AALFFMEM W Sbjct: 353 AHTTSSVVQSIFVVIVLDAVAALFFMEMNW 382 >ref|YP_002869794.1| putative ABC transporter permease [Pseudomonas fluorescens SBW25] emb|CAY46382.1| putative ABC transport system, permease [Pseudomonas fluorescens SBW25] Length = 382 Score = 348 bits (893), Expect = 5e-94, Method: Composition-based stats. Identities = 195/276 (70%), Positives = 235/276 (85%), Gaps = 1/276 (0%) Query: 1 MPKAAPPPQAWITDMLERAGVATLNLRACSRGLLGFAGLCLQTLAASFWRPSRWRFTGVV 60 +P+ AP A I +L R G A + S+ LLGF GL L+T A +RP RWR T +V Sbjct: 108 VPEKAPEEAAGI-QVLARIGRAVDTVWQDSKQLLGFIGLILETFARGIFRPRRWRLTPMV 166 Query: 61 AQVEQTGLDAVPIVSLLTFMVGAVVAFLGATVLADFGASLYTVDLVAFSFLREFAVLLTA 120 A +EQ GLDA PIV+LLTF+VGAVVAFLGATVL FGA+++TVDLVAFSFLREF VLLTA Sbjct: 167 AHLEQVGLDAAPIVALLTFLVGAVVAFLGATVLKSFGATIFTVDLVAFSFLREFGVLLTA 226 Query: 121 ILMAGRTASSFTAQIGSMKANEEIDAIRALGLDPINLLVLPRIIALLISMPLLTFIAMMS 180 IL+AGRTAS+FTAQIGSMKANEEIDAIR LGLDP+ LLVLPR++ALL+++P+LTF+AM+S Sbjct: 227 ILIAGRTASAFTAQIGSMKANEEIDAIRTLGLDPMELLVLPRVLALLVALPMLTFLAMLS 286 Query: 181 GLFGGAMVCALSLDISPTMFLSLLQQDVGIRHFVLGMVKAPLFAFVIAIIGCNEGFKVSG 240 G+ GG +VCA++LDISP MFLSLLQ D+G++HF++G+VKAP+FAF+IA IGC EGFKVSG Sbjct: 287 GIVGGGVVCAVALDISPAMFLSLLQSDIGVQHFLVGLVKAPIFAFLIAAIGCLEGFKVSG 346 Query: 241 SAQSVGQHTTSSVVQSIFVVILLDALAALFFMEMGW 276 SA+SVG HTTSSVVQSIFVVI+LDA+AALFFMEMGW Sbjct: 347 SAESVGAHTTSSVVQSIFVVIVLDAVAALFFMEMGW 382 >ref|YP_345770.1| hypothetical protein Pfl01_0037 [Pseudomonas fluorescens Pf0-1] gb|ABA71781.1| putative ABC transport system, permease [Pseudomonas fluorescens Pf0-1] Length = 382 Score = 348 bits (893), Expect = 5e-94, Method: Composition-based stats. Identities = 192/262 (73%), Positives = 230/262 (87%) Query: 15 MLERAGVATLNLRACSRGLLGFAGLCLQTLAASFWRPSRWRFTGVVAQVEQTGLDAVPIV 74 +L R G A + + LLGF GL L+T+A S +RP RWR T ++A +EQTGLDA PIV Sbjct: 121 LLTRIGRAVDTVWQDTLQLLGFVGLILETIARSLFRPKRWRITPMIAHIEQTGLDAAPIV 180 Query: 75 SLLTFMVGAVVAFLGATVLADFGASLYTVDLVAFSFLREFAVLLTAILMAGRTASSFTAQ 134 +LLTF+VGAVVAFLGATVLA FGAS++TVDLV F+FLREF VLLTAILMAGRTAS+FTAQ Sbjct: 181 ALLTFLVGAVVAFLGATVLASFGASVFTVDLVGFAFLREFGVLLTAILMAGRTASAFTAQ 240 Query: 135 IGSMKANEEIDAIRALGLDPINLLVLPRIIALLISMPLLTFIAMMSGLFGGAMVCALSLD 194 IGSMKANEEIDAIR LGLDP+ LLV+PR++ALL+++P+LTF+AM+ G+ GGA+VCA+SLD Sbjct: 241 IGSMKANEEIDAIRTLGLDPMELLVVPRVLALLVALPMLTFLAMICGIVGGAVVCAVSLD 300 Query: 195 ISPTMFLSLLQQDVGIRHFVLGMVKAPLFAFVIAIIGCNEGFKVSGSAQSVGQHTTSSVV 254 ISP MFLSLLQ D+GI+HF++G+VKAP+FAF+IA IGC EGFKVSGSA+SVG HTTSSVV Sbjct: 301 ISPAMFLSLLQSDIGIQHFLVGLVKAPIFAFLIAAIGCLEGFKVSGSAESVGAHTTSSVV 360 Query: 255 QSIFVVILLDALAALFFMEMGW 276 QSIFVVI+LDA+AALFFMEMGW Sbjct: 361 QSIFVVIVLDAVAALFFMEMGW 382