BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3375.p (373 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776283.1| outer membrane porin [Herbaspirillum seroped... 510 e-142 ref|YP_004751955.1| outer membrane protein [Collimonas fungivora... 453 e-125 ref|YP_004754681.1| outer membrane protein [Collimonas fungivora... 278 1e-72 ref|YP_003773619.1| outer membrane protein (porin) signal peptid... 244 2e-62 ref|YP_003777672.1| outer membrane porin [Herbaspirillum seroped... 243 4e-62 >ref|YP_003776283.1| outer membrane porin [Herbaspirillum seropedicae SmR1] gb|ADJ64375.1| outer membrane (porin) protein [Herbaspirillum seropedicae SmR1] Length = 372 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 283/347 (81%), Positives = 314/347 (90%) Query: 27 VTVYGVIDMSLVYTSKVGAGNNSRVSVDSGDAMASRIGVRGKEELGGGLAAVFQLENGFA 86 VTVYGVIDMSLVYTSKVG N SR S+DSGDAMASRIG+RG+EELG GLAA+FQLE GFA Sbjct: 26 VTVYGVIDMSLVYTSKVGPDNGSRASLDSGDAMASRIGLRGREELGDGLAAIFQLETGFA 85 Query: 87 ADDGAMSTPGTLFDRKSVVGLSGHVGTLTIGRQTDYLEEIGLQYSSFQIFGGGGVRAGHF 146 DDGAM+TPGTLFDRKSVVGL+G GTLT+GRQTDYLEEIG QY+SFQIFGGGGVRA HF Sbjct: 86 GDDGAMATPGTLFDRKSVVGLAGRFGTLTVGRQTDYLEEIGQQYTSFQIFGGGGVRAAHF 145 Query: 147 NSLDRLTGARTSNSLRFDTAEMGGFTGSLFYGFGEVAGKTSAGQAFGVGANYRRGNAGIG 206 NSLDR+TGAR++NSLRFDTAE GG GS +YG GEVAG T +GQ+ GVG N+RRGN G+G Sbjct: 146 NSLDRITGARSNNSLRFDTAEYGGLRGSFYYGAGEVAGSTRSGQSLGVGGNFRRGNVGVG 205 Query: 207 AAYYQSKLAADTPPSSAGDTDLKTFTLGASYQAGPAKLFAAWSQVRRPTQQPLAASGLVA 266 AAY+QSKLA+D P+ AGDT+LKTFTLGASYQAGPAKLFAAWSQ+RRPTQQPLA+SGLVA Sbjct: 206 AAYFQSKLASDALPARAGDTELKTFTLGASYQAGPAKLFAAWSQIRRPTQQPLASSGLVA 265 Query: 267 ITSATRANVFDVGVDYAMNAKLHLLGSVIHDRADLSRASGGATRGHTTQFNVGIDYFFSK 326 ITSATRANV DVGVDYA+++KLHLL SVIHDRADLSRA+GGATRG TTQ N+G+D SK Sbjct: 266 ITSATRANVLDVGVDYALDSKLHLLASVIHDRADLSRAAGGATRGSTTQVNLGVDLLLSK 325 Query: 327 RTDLYAMASRQSASDVLNPGVISAAYSSAPADDSSQNVLRIGLRHKF 373 RTD+YAMASRQ A DVLNPG+ISAAYSSAPADDSSQNVLR+GLRHKF Sbjct: 326 RTDVYAMASRQQARDVLNPGIISAAYSSAPADDSSQNVLRVGLRHKF 372 >ref|YP_004751955.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AEK61132.1| Outer membrane protein [Collimonas fungivorans Ter331] Length = 370 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 252/373 (67%), Positives = 310/373 (83%), Gaps = 3/373 (0%) Query: 1 MKKLVFTLSALGLLNASQCAQAQTSSVTVYGVIDMSLVYTSKVGAGNNSRVSVDSGDAMA 60 MKK VF L+ALGL+ A+ AQAQT+ VT+YGVID L YTSKVG N+SR+S+DSGD Sbjct: 1 MKKTVFALAALGLIGAN--AQAQTN-VTIYGVIDAGLTYTSKVGPKNDSRISLDSGDMAT 57 Query: 61 SRIGVRGKEELGGGLAAVFQLENGFAADDGAMSTPGTLFDRKSVVGLSGHVGTLTIGRQT 120 SRIG RG E+LGGGL A+FQLENGF ADDG+++T TLFDRK+VVGLSG GT+T+GRQT Sbjct: 58 SRIGFRGTEDLGGGLKAIFQLENGFNADDGSLATASTLFDRKAVVGLSGSFGTVTLGRQT 117 Query: 121 DYLEEIGLQYSSFQIFGGGGVRAGHFNSLDRLTGARTSNSLRFDTAEMGGFTGSLFYGFG 180 DYL++IG +Y+S Q FG G++AGHFN+LDR+ G R +NS+R+D+A + GFTGSLFYGFG Sbjct: 118 DYLDDIGSKYTSVQTFGSNGIKAGHFNNLDRVGGVRANNSIRYDSANLSGFTGSLFYGFG 177 Query: 181 EVAGKTSAGQAFGVGANYRRGNAGIGAAYYQSKLAADTPPSSAGDTDLKTFTLGASYQAG 240 EVAG+TSAGQ+FG+ NY G GIG Y+Q+KLAAD PS AGDTDLKTFTLGASYQAG Sbjct: 178 EVAGQTSAGQSFGLAGNYANGPFGIGLGYFQTKLAADALPSKAGDTDLKTFTLGASYQAG 237 Query: 241 PAKLFAAWSQVRRPTQQPLAASGLVAITSATRANVFDVGVDYAMNAKLHLLGSVIHDRAD 300 PAK++ AWSQ +RP LAA+GLV IT+AT+AN+FD+GVDY+++ LHLL SVI+DRAD Sbjct: 238 PAKIYGAWSQTKRPLAAALAATGLVNITTATKANIFDLGVDYSLSGNLHLLASVIYDRAD 297 Query: 301 LSRASGGATRGHTTQFNVGIDYFFSKRTDLYAMASRQSASDVLNPGVISAAYSSAPADDS 360 LSR + G+T+G TTQ N+G+DY+ SKRTDLYA+ + Q A+DV NPGVI+AAYSSAPADD+ Sbjct: 298 LSRKTAGSTKGKTTQLNLGVDYYLSKRTDLYALYTNQRANDVNNPGVINAAYSSAPADDT 357 Query: 361 SQNVLRIGLRHKF 373 SQNV R+GLRHKF Sbjct: 358 SQNVFRVGLRHKF 370 >ref|YP_004754681.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AAT42406.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AEK63858.1| Outer membrane protein [Collimonas fungivorans Ter331] Length = 390 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 190/400 (47%), Positives = 252/400 (63%), Gaps = 46/400 (11%) Query: 7 TLSALGLLNASQCAQAQTSSVTVYGVIDMSLVYTSKV---GAGNNSRVSVDSGDAMASRI 63 +L AL +L A A SSVT+YG++D +VYTSK G S+ S++SG SR+ Sbjct: 4 SLIALAVLGAIAGAAQAQSSVTIYGIVDTGIVYTSKALTSTGGTGSKFSINSGIIQGSRL 63 Query: 64 GVRGKEELGGGLAAVFQLENGFAADDGAMST---PGTLFDRKSVVGLSGHVGTLTIGRQT 120 G +G E+LGGGL A+FQLE GF D G + TLF RKSVVGL G+ G++ +GRQT Sbjct: 64 GFKGVEDLGGGLKALFQLEAGFNNDTGGLQGDKGTTTLFRRKSVVGLGGNFGSVLLGRQT 123 Query: 121 DYLEEIGLQYSSFQIFGGGGVRAGHFNSLDRLTGARTSNSLRFDTAEMGGFTGSLFYGFG 180 D L+++ Q++S Q FGG GH +LDRL G RT+NS+R++T ++ GFTGSL YGFG Sbjct: 124 DILDDVS-QWTSVQDFGGVTGSVGH--NLDRLEGTRTNNSIRYNTPDVSGFTGSLIYGFG 180 Query: 181 EVAGKTSAGQAFGVGANYRRGNAGIGAAYYQSKLAADTPPSS--------------AGDT 226 E AG+TSAGQ+FG GA Y G G+ AAYYQSKL + T + +GDT Sbjct: 181 ETAGQTSAGQSFGAGAQYANGPLGLFAAYYQSKLGSPTASDTSLINGSQVANFSGKSGDT 240 Query: 227 DLKTFTLGASYQAGPAKLFAAWSQVRRPTQQPLAASGLVAIT-------------SATRA 273 LKTF++GASYQAGPA+L+ WS+ T+QPLA S A T + T+A Sbjct: 241 ALKTFSIGASYQAGPARLYGNWSR----TKQPLATSSNSATTGILQPGSFTVGSFNNTKA 296 Query: 274 NVFDVGVDYAMNAKLHLLGSVIHDRADLSRASGGATRGHTTQFNVGIDYFFSKRTDLYAM 333 ++F++GV+YA+ A LHLL SV +++ L+ A GA +G TQFN+G DYF SKRTDLYA Sbjct: 297 DIFELGVNYAVTAPLHLLASVQYNK--LTFADAGADKGKLTQFNLGTDYFLSKRTDLYAF 354 Query: 334 ASRQSASDVLNPGVISAAYSSAPADDSSQNVLRIGLRHKF 373 S A D +NPGV Y + D +Q + +G+RHKF Sbjct: 355 VSNLRAKDAVNPGV----YGDSLGDTGNQTAVAVGIRHKF 390 >ref|YP_003773619.1| outer membrane protein (porin) signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ61711.1| outer membrane protein (porin) signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 390 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 174/399 (43%), Positives = 241/399 (60%), Gaps = 44/399 (11%) Query: 7 TLSALGLLNASQCAQAQTSSVTVYGVIDMSLVYTSKVG---AGNNSRVSVDSGDAMASRI 63 +L AL +L A A SSVT+YG++D +VY SKV G S+ S++SG SRI Sbjct: 4 SLLALAVLGAFAGAAQAQSSVTIYGIVDTGVVYQSKVATPTGGTGSKFSLNSGVIQGSRI 63 Query: 64 GVRGKEELGGGLAAVFQLENGFAADDGAM---STPGTLFDRKSVVGLSGHVGTLTIGRQT 120 G +G E+LGGGL+AVF LE GF+ D GA+ T TLF RKSVVGL+G+ G++ +GRQT Sbjct: 64 GFKGTEDLGGGLSAVFNLEAGFSNDTGALDDSKTSNTLFRRKSVVGLAGNFGSVLLGRQT 123 Query: 121 DYLEEIGLQYSSFQIFGGGGVRAGHFNSLDRLTGARTSNSLRFDTAEMGGFTGSLFYGFG 180 D+ + I Y+S Q FGG AGH +LDRL G RT+NS+ + TA + GFTG+L YGFG Sbjct: 124 DFADTIS-SYTSVQDFGGWTGAAGH--NLDRLEGTRTNNSISYTTANLNGFTGNLMYGFG 180 Query: 181 EVAGKTSAGQAFGVGANYRRGNAGIGAAYYQSKLAADTPPSSA----------------G 224 E AG+TSAGQAFGVG Y G G+G YYQSK A TP ++ G Sbjct: 181 ETAGQTSAGQAFGVGGKYDNGPLGLGINYYQSK-AGSTPADASLLAATGTNQFTNGTNNG 239 Query: 225 DTDLKTFTLGASYQAGPAKLFAAWSQVRRP--TQQPLAASGLVAITS--------ATRAN 274 T K + ASYQ GPA+++ WS+V++ TQ L A+G+ ++ + + +A+ Sbjct: 240 STAQKVLNVAASYQFGPARVYGNWSRVKQDLNTQANLTAAGVGSLATISNRTLAASNKAD 299 Query: 275 VFDVGVDYAMNAKLHLLGSVIHDRADLSRASGGATRGHTTQFNVGIDYFFSKRTDLYAMA 334 ++++G Y+++ L LL +V H RA SG A TQ ++G DY+ SKRTDLYA Sbjct: 300 IYEIGTAYSLSPSLKLLAAVDHTRAQFDGVSGKAK---LTQVSLGTDYWLSKRTDLYAFL 356 Query: 335 SRQSASDVLNPGVISAAYSSAPADDSSQNVLRIGLRHKF 373 + A+D+ NPGV + + D +Q + +G+RHKF Sbjct: 357 AYSKATDLNNPGV-----ADSSGTDGNQGAVAVGIRHKF 390 >ref|YP_003777672.1| outer membrane porin [Herbaspirillum seropedicae SmR1] emb|CAP19662.1| porin [Herbaspirillum seropedicae] gb|ADJ65764.1| outer membrane (porin) protein [Herbaspirillum seropedicae SmR1] Length = 387 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 177/397 (44%), Positives = 240/397 (60%), Gaps = 43/397 (10%) Query: 7 TLSALGLLNASQCAQAQTSSVTVYGVIDMSLVYTSKVG-------AGNNSRVSVDSGDAM 59 +L AL +L A A SSVT+YG++D + Y+SKVG A S+ ++SG Sbjct: 4 SLLALAVLGAFAGAAQAQSSVTIYGIVDTGIAYSSKVGYTDANGNAATGSKFGINSGVIQ 63 Query: 60 ASRIGVRGKEELGGGLAAVFQLENGFAADDGAMS-----TPGTLFDRKSVVGLSGHVGTL 114 SRIG +G E+LGGGL+AVF LE GF +DDG + T LF RKSVVGLSG GT+ Sbjct: 64 GSRIGFKGVEDLGGGLSAVFNLETGFTSDDGGLQGSDAVTSSNLFRRKSVVGLSGGFGTV 123 Query: 115 TIGRQTDYLEEIGLQYSSFQIFGGGGVRAGHFNSLDRLTGARTSNSLRFDTAEMGGFTGS 174 +GRQTD+ + I Y++ FGG V A +SL+RL G RT+NS+ + TA + GFTG+ Sbjct: 124 LLGRQTDFADTIS-AYTAVADFGG--VVANSGSSLNRLQGTRTNNSVSYTTANLSGFTGN 180 Query: 175 LFYGFGEVAGKTSAGQAFGVGANYRRGNAGIGAAYYQSKLAADTPPSS------------ 222 L YGFGE AGKTSAGQA+G+G Y G G+G YYQSK A TP + Sbjct: 181 LIYGFGEQAGKTSAGQAYGIGGKYDNGPLGLGINYYQSK-AGSTPSDTSLIPAAGATNAN 239 Query: 223 -----AGDTDLKTFTLGASYQAGPAKLFAAWSQVRRPTQ-QPLAASGLVAITSATRANVF 276 AG+T LK+ + ASYQ GPA+++A +S+V++ + P A+ +A +A +A+ + Sbjct: 240 TALGVAGNTALKSLNVVASYQFGPARVYANYSRVKQDLKGTPTVATATLA--NAQKADTY 297 Query: 277 DVGVDYAMNAKLHLLGSVIHDRADLSRASGGATRGHTTQFNVGIDYFFSKRTDLYAMASR 336 ++G Y+++ L LL +V H RA +G T+G TQ ++G DYF SKRTDLYA S Sbjct: 298 EIGTAYSLSPSLKLLAAVDHSRATF---NGVNTKGKLTQISLGADYFLSKRTDLYAFVSN 354 Query: 337 QSASDVLNPGVISAAYSSAPADDSSQNVLRIGLRHKF 373 ASD+ NPGV A S D+SQ + G+RHKF Sbjct: 355 MRASDIQNPGVTGGATGS----DASQTAIITGIRHKF 387