BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3372.p (331 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776916.1| plant photosystem II stability/assembly fact... 475 e-132 ref|YP_003777317.1| oxidoreductase [Herbaspirillum seropedicae S... 289 5e-76 ref|YP_293549.1| BNR repeat-containing glycosyl hydrolase [Ralst... 243 2e-62 ref|YP_001892848.1| glycosyl hydrolase, BNR repeat [Ralstonia pi... 243 4e-62 ref|YP_001861017.1| hypothetical protein Bphy_4866 [Burkholderia... 240 2e-61 >ref|YP_003776916.1| plant photosystem II stability/assembly factor protein [Herbaspirillum seropedicae SmR1] gb|ADJ65008.1| plant photosystem II stability/assembly factor protein [Herbaspirillum seropedicae SmR1] Length = 331 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 266/294 (90%), Positives = 281/294 (95%) Query: 38 RSDAHALHNMMLGATRAGSRIVAVGAYGYIILSDDGGASYRQADKVPVDTTLTTVSFAGT 97 R+DAHALHNMMLGA RAGSRIVAVGAYGYIILSDDGGASYRQAD+VPVDTTLT+VSFA Sbjct: 38 RTDAHALHNMMLGAARAGSRIVAVGAYGYIILSDDGGASYRQADQVPVDTTLTSVSFADA 97 Query: 98 EQGWAAGHGGVILHTADGGKTWALQRSDTSVDQPLFSIWFANANEGWAAGLWSLLLHTRD 157 QGWAAGHGGVILHTADGGKTWALQRSDTSVDQPLFSIWFANANEGWAAGLWSLLLHT+D Sbjct: 98 SQGWAAGHGGVILHTADGGKTWALQRSDTSVDQPLFSIWFANANEGWAAGLWSLLLHTQD 157 Query: 158 GGKSWQQVKLPTAPGQQRGDLNLLHIFPGRDGALFVSVEQGVLYRSLDGGRHWEALATGS 217 GGKSWQQVKLP APGQQR DLNLLHIFPGRDGALFV+ EQGVLYRS DGG+HWEALATG+ Sbjct: 158 GGKSWQQVKLPAAPGQQRADLNLLHIFPGRDGALFVAAEQGVLYRSRDGGQHWEALATGT 217 Query: 218 KASLWSGVVTASGAIIVGGLGGKLLRSEDGGQHWQVLASPTSGSITALRSEGNQVMASSL 277 KASLWSGV TASGAI+VGGLGGKLLRS+DGGQHWQV+ASPTSGSITALRSEGNQVMASSL Sbjct: 218 KASLWSGVSTASGAIVVGGLGGKLLRSDDGGQHWQVIASPTSGSITALRSEGNQVMASSL 277 Query: 278 SGSLLVSEDDGRQWRIKAEARDALTTLELQDGRAERPIAYGKGGQAKLEASVTR 331 SG+LL S+DDGRQWRIKA ARDALTTLELQ+GRAERP+AYGKGGQAKLE S +R Sbjct: 278 SGALLASDDDGRQWRIKATARDALTTLELQEGRAERPLAYGKGGQAKLEVSASR 331 >ref|YP_003777317.1| oxidoreductase [Herbaspirillum seropedicae SmR1] gb|ADJ65409.1| oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 327 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 165/293 (56%), Positives = 202/293 (68%), Gaps = 1/293 (0%) Query: 13 LALLAGGVSHGAFAQAGAAVTLSPARSDAHALHNMMLGATRAGSRIVAVGAYGYIILSDD 72 L L G S A AQ V + A +D A MML A AG R+VAVGA G +ILSDD Sbjct: 8 LWLALAGCSTLAAAQGMEPVPVRAAVADRFADRAMMLDAALAGERVVAVGARGEVILSDD 67 Query: 73 GGASYRQADKVPVDTTLTTVSFAGTEQGWAAGHGGVILHTADGGKTWALQRSDTSVDQPL 132 GG +RQA +VPVD TLT VSF ++GWA GHGGV++HTADGG+TW LQRS T VDQPL Sbjct: 68 GGRQWRQARQVPVDFTLTAVSFVDDKEGWAVGHGGVVIHTADGGETWQLQRSATDVDQPL 127 Query: 133 FSIWFANANEGWAAGLWSLLLHTRDGGKSWQQVKLPTAPGQQRGDLNLLHIFPGRDGALF 192 F+++F + GWAAGLWSLLL T DGGK+W + LP A G +R DLNLL FPG L+ Sbjct: 128 FTVYFRDREHGWAAGLWSLLLQTEDGGKTWTTLHLPVAAGSKRSDLNLLRFFPGSGDTLY 187 Query: 193 VSVEQGVLYRSLDGGRHWEALATGSKASLWSGVVT-ASGAIIVGGLGGKLLRSEDGGQHW 251 ++ EQG L+RS D G+HW+ LATGSKASLWSG V +GA+IV GLGGKLLRS DGG W Sbjct: 188 LAAEQGTLFRSTDAGQHWDILATGSKASLWSGAVAQPAGALIVAGLGGKLLRSTDGGSQW 247 Query: 252 QVLASPTSGSITALRSEGNQVMASSLSGSLLVSEDDGRQWRIKAEARDALTTL 304 Q +A PTSGSIT +++ + A+SL G +L S D+G W++ A LTT+ Sbjct: 248 QTVALPTSGSITRVQATPGLLTAASLEGKILQSRDEGVSWQVLWSAPQGLTTI 300 >ref|YP_293549.1| BNR repeat-containing glycosyl hydrolase [Ralstonia eutropha JMP134] gb|AAZ65692.1| Glycosyl hydrolase, BNR repeat protein [Ralstonia eutropha JMP134] Length = 323 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 144/311 (46%), Positives = 191/311 (61%), Gaps = 6/311 (1%) Query: 16 LAGGVSHGAFAQAGAAVTLS-----PARSDAHALHNMMLGATRAGSRIVAVGAYGYIILS 70 +A + AFAQ + T++ PA + A H M+L ATRAG RIVAVG +G I+LS Sbjct: 9 IALSTATAAFAQTPSKGTVTTWAAKPAHMWSAATHRMLLDATRAGKRIVAVGEHGIILLS 68 Query: 71 DDGGASYRQADKVPVDTTLTTVSFAGTEQGWAAGHGGVILHTADGGKTWALQRSDTSVDQ 130 DD G +YRQA VPV TL+ VSFA + GW G GVIL T DGG+TW QR DT+ DQ Sbjct: 69 DDEGKTYRQARSVPVSATLSAVSFADDKHGWVVGQWGVILATRDGGETWEKQRMDTAADQ 128 Query: 131 PLFSIWFANANEGWAAGLWSLLLHTRDGGKSWQQVKLPTAPGQQRGDLNLLHIFPGRDGA 190 PLFS+ F N +G A GLWSL+L T DGGK+W + LP P + D NL H+F + GA Sbjct: 129 PLFSVLFTNDRDGLAVGLWSLMLQTHDGGKTWTKTTLPKPPDGGKADRNLYHVFADQKGA 188 Query: 191 LFVSVEQGVLYRSLDGGRHWEALATGSKASLWSGVVTASGAIIVGGLGGKLLRSEDGGQH 250 L++S EQG++ +S DGG +W+ LATGSK SLWSGV G I+VGGL G + +S+DGG Sbjct: 189 LYISAEQGIVLKSTDGGANWDYLATGSKGSLWSGVAMPDGRIVVGGLLGSVFQSKDGGAT 248 Query: 251 WQVLASPTSGSITALRSEGNQVMASSLSGSLLVSEDDGRQWRIKAEARDALTTLELQDGR 310 W L + T SIT L + GN+++ L G ++ + + +K A T L++ Sbjct: 249 WSPLKTGTKSSITELTAVGNELVGVGLDGLVMKQKALDASFEVKQREDRATLTGSLKND- 307 Query: 311 AERPIAYGKGG 321 A R I + + G Sbjct: 308 AGRIILFAREG 318 >ref|YP_001892848.1| glycosyl hydrolase, BNR repeat [Ralstonia pickettii 12J] ref|YP_002984350.1| BNR repeat-containing glycosyl hydrolase [Ralstonia pickettii 12D] gb|ACD29421.1| glycosyl hydrolase, BNR repeat [Ralstonia pickettii 12J] gb|ACS65678.1| BNR repeat-containing glycosyl hydrolase [Ralstonia pickettii 12D] Length = 323 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 145/293 (49%), Positives = 181/293 (61%), Gaps = 3/293 (1%) Query: 30 AAVTLSPARSDAHALHNMMLGATRAGSRIVAVGAYGYIILSDDGGASYRQADKVPVDTTL 89 A + PA + + M+L ATRAG RIVAVG +G ++LSDD G +YRQA VP TL Sbjct: 28 ATWSAKPAHTWPAPTNRMLLDATRAGKRIVAVGEHGIVLLSDDEGQTYRQARTVPASATL 87 Query: 90 TTVSFAGTEQGWAAGHGGVILHTADGGKTWALQRSDTSVDQPLFSIWFANANEGWAAGLW 149 + VSFA GWA G GVIL T+DGG+TW QR DT+VDQPLFS+ F N +G A GLW Sbjct: 88 SAVSFADERHGWAVGQWGVILATSDGGETWQKQRMDTAVDQPLFSVLFTNDRDGIAIGLW 147 Query: 150 SLLLHTRDGGKSWQQVKLPTAPGQQRGDLNLLHIFPGRDGALFVSVEQGVLYRSLDGGRH 209 SL+L T DGGK+W + LP PG R D NL H+F GA ++S EQG + +S DGG Sbjct: 148 SLMLQTHDGGKTWTKTTLPKPPGGGRADRNLYHVFADGKGAFYISAEQGTVLKSTDGGAT 207 Query: 210 WEALATGSKASLWSGVVTASGAIIVGGLGGKLLRSEDGGQHWQVLASPTSGSITALRSEG 269 W+ LATG K SLWSGV G I+VGGL G L +S DGG +WQ L + T SIT L + G Sbjct: 208 WDYLATGGKGSLWSGVAMPDGRIVVGGLLGSLFQSSDGGANWQPLKAETKSSITGLVASG 267 Query: 270 NQVMASSLSGSLLVSEDDGRQWRI-KAEARDALTTLELQDGRAERPIAYGKGG 321 N +A L G +L +DG + + E R ALT + G +PI + K G Sbjct: 268 NGFVAVGLDGLVLKQREDGAPLAVAQREDRAALTAAVIDAG--GKPILFSKEG 318 >ref|YP_001861017.1| hypothetical protein Bphy_4866 [Burkholderia phymatum STM815] gb|ACC73971.1| conserved hypothetical protein [Burkholderia phymatum STM815] Length = 329 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 133/276 (48%), Positives = 176/276 (63%), Gaps = 1/276 (0%) Query: 30 AAVTLSPARSDAHALHNMMLGATRAGSRIVAVGAYGYIILSDDGGASYRQADKVPVDTTL 89 A + L A A H +LG +RAGSRIVAVG +G ++ SDDGG ++ QA VPVD+TL Sbjct: 36 AELRLGEAERTRSAAHTQILGVSRAGSRIVAVGDHGVVLRSDDGGKTFNQARSVPVDSTL 95 Query: 90 TTVSFAGTEQGWAAGHGGVILHTADGGKTWALQRSDTSVDQPLFSIWFANANEGWAAGLW 149 T VSF ++ GWA GH GVI+ T DGG+TW L+RSDT VDQPLFS+ F +A GWA GLW Sbjct: 96 TAVSFVDSKNGWAVGHWGVIIRTRDGGETWVLERSDTKVDQPLFSVHFDDAEHGWAVGLW 155 Query: 150 SLLLHTRDGGKSWQQVKLPTAPGQQRGDLNLLHIFPGRDGALFVSVEQGVLYRSLDGGRH 209 SLLLHT DGG++W V P PG ++ D N + G+L+++ EQG++ RS DGG+ Sbjct: 156 SLLLHTEDGGRTWHSVSAPIPPGAKKADRNFFSVVGDGKGSLYIACEQGLVLRSRDGGQT 215 Query: 210 WEALATGSKASLWSGVVTASGAIIVGGLGGKLLRSEDGGQHWQVLASPTSGSITALRSEG 269 W TG SLWS VV G +IVGGL G + RS D G+ WQ S + SIT Sbjct: 216 WSYSQTGYDGSLWSAVVLNDGTLIVGGLRGTIYRSTDNGETWQRSESQSKSSITDFSVHS 275 Query: 270 NQVMASSLSGSLLVSEDDGRQW-RIKAEARDALTTL 304 +++AS+L G +L S+D G+ + + R+ALT + Sbjct: 276 GKIVASALDGVVLESKDGGKTFSSTQRSGREALTAI 311