BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3370.p (563 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776914.1| hypothetical protein Hsero_3527 [Herbaspiril... 1014 0.0 ref|YP_003777319.1| hypothetical protein Hsero_3940 [Herbaspiril... 725 0.0 ref|YP_004234203.1| hypothetical protein Acav_1718 [Acidovorax a... 589 e-166 ref|YP_348481.1| hypothetical protein Pfl01_2750 [Pseudomonas fl... 506 e-141 ref|NP_744955.1| hypothetical protein PP_2811 [Pseudomonas putid... 498 e-139 >ref|YP_003776914.1| hypothetical protein Hsero_3527 [Herbaspirillum seropedicae SmR1] gb|ADJ65006.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 1014 bits (2621), Expect = 0.0, Method: Composition-based stats. Identities = 518/563 (92%), Positives = 540/563 (95%) Query: 1 MKNHLQTRVIALAAATLCSGAAQAITFEGETVSGNFDSTVSLGVGVRASKQSCGLIIGSS 60 M + ++IALAAATLCSG AQA+TFEGETVSGNFDSTVS GVGVRASKQ+CGL+IGSS Sbjct: 1 MNKQIHYKIIALAAATLCSGGAQAMTFEGETVSGNFDSTVSFGVGVRASKQACGLVIGSS 60 Query: 61 GGSAAAASGPSAPGGCADALSSLNDQGDLNYNRGDRFTTYLKGTHELLLNMPEDVKFLGR 120 G+AA ASGPSAPGGCADALSSLNDQGDLNYNRGDRFTTYLKGTHELLLNMPEDVKFLGR Sbjct: 61 AGNAAGASGPSAPGGCADALSSLNDQGDLNYNRGDRFTTYLKGTHELLLNMPEDVKFLGR 120 Query: 121 VSWLRDYSATRSTGNISGANTTGRALSDDATNELHSKVRLLDLWVSKSFDLGEERARIRV 180 VSWLRDYSATR+TGNISG N TGR+LSDDATNELHSKVRLLDLWVSKSFDLGEERARIRV Sbjct: 121 VSWLRDYSATRNTGNISGGNPTGRSLSDDATNELHSKVRLLDLWVSKSFDLGEERARIRV 180 Query: 181 GNQVVNWGESLFIAGGINQTNAIDLMRLSNPGTQLKEAILPAPMVNFATGLGRGFSVETY 240 GNQVVNWGESLFIAGGINQTNAID+MRLSNPGTQLKEAILPAPMVNFATGLGRGFSVETY Sbjct: 181 GNQVVNWGESLFIAGGINQTNAIDIMRLSNPGTQLKEAILPAPMVNFATGLGRGFSVETY 240 Query: 241 VQQGWESNYFPPVGSYWSTATVGSGADALGVPVTGRPRSTGQYGVALRYTPPGADVNFGL 300 VQQGWESNYFPPVGSYWSTATVG GA+ALGVPVT RPRSTGQYGVALRYTPPGADVNFGL Sbjct: 241 VQQGWESNYFPPVGSYWSTATVGIGAEALGVPVTSRPRSTGQYGVALRYTPPGADVNFGL 300 Query: 301 YVMNYHDKSPVLSTANTASGLGYSYLEDRKMVGLSANFPLGNWAIGTELSYRPKDAVSLN 360 YVMNYHDKSPVLSTANT SGLGYSYLEDRKMVGLSANFPLGNWAIGTELSYRPKD VSLN Sbjct: 301 YVMNYHDKSPVLSTANTPSGLGYSYLEDRKMVGLSANFPLGNWAIGTELSYRPKDPVSLN 360 Query: 361 GSVQNANGGLCQTNGKCYIETEKYQLAITGMLSLTPSEHGAVLKTLGADTATLMVEAVAI 420 GSV NANGG C NGKCY+E EKYQLA+TG+LSL+PSEHG+VLK LGADTATLMVEAVAI Sbjct: 361 GSVPNANGGFCMVNGKCYVEAEKYQLAVTGLLSLSPSEHGSVLKALGADTATLMVEAVAI 420 Query: 421 KYPNLKNAYGGIPVAAGLWGWGYDTTANASNTLANGGNTSGVGSATSYGYNFDFSWVYDG 480 KYPNLK++YGGIPVAAGLWGWGYDTTANA+ TLANGGNT+GVGS+TSYGYNFDFSWVYDG Sbjct: 421 KYPNLKSSYGGIPVAAGLWGWGYDTTANANRTLANGGNTAGVGSSTSYGYNFDFSWVYDG 480 Query: 481 SVIPGWQVIPEVYFFHAVKGRTPNATATFMEGAKMANFTVTFTQNPAKWQVALNFAKFWG 540 SVIPGWQVIPEVYFFHAVKGRTPNATATFMEGAKMANFTVTF QNPAKWQVALNFAKFWG Sbjct: 481 SVIPGWQVIPEVYFFHAVKGRTPNATATFMEGAKMANFTVTFMQNPAKWQVALNFAKFWG 540 Query: 541 GASVFDQPLRDRSFYGMTISRNF 563 GASVFDQPLRDRSFYGMT+SRNF Sbjct: 541 GASVFDQPLRDRSFYGMTVSRNF 563 >ref|YP_003777319.1| hypothetical protein Hsero_3940 [Herbaspirillum seropedicae SmR1] gb|ADJ65411.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 372/563 (66%), Positives = 452/563 (80%), Gaps = 12/563 (2%) Query: 9 VIALAAATLCSGAAQAITFEGETVSGNFDSTVSLGVGVRASKQSCGLIIGS-SGGSAAAA 67 V+ L A L SG AQA TFE E+VSGNFDSTV+LGVG+RA+K C IIG+ +GG + Sbjct: 23 VLPLMGACLYSGNAQAFTFETESVSGNFDSTVTLGVGIRAAKPGCSSIIGTVNGGQPSGP 82 Query: 68 SGPSAPGGCADALSSLNDQGDLNYNRGDRFTTYLKGTHELLLNMPEDVKFLGRVSWLRDY 127 +G AP GCAD+LS NDQG+LNY+RG FTTYLKGTHEL+L +P+D KFLGRVSW+RD+ Sbjct: 83 TGAGAPAGCADSLSQYNDQGNLNYDRGSAFTTYLKGTHELMLKLPDDFKFLGRVSWMRDF 142 Query: 128 SA-TRSTGNISGANTTGRALSDDATNELHSKVRLLDLWVSKSFDLGEERARIRVGNQVVN 186 +A T +TG +SG G +A+ ++ +K RLLDLWVSK F +G++RAR+RVGNQVVN Sbjct: 143 AAATSTTGYVSGGG--GSTFPGNASGQVSNKTRLLDLWVSKEFSIGDQRARLRVGNQVVN 200 Query: 187 WGESLFIAGGINQTNAIDLMRLSNPGTQLKEAILPAPMVNFATGLGRGFSVETYVQQGWE 246 WGESLFI GGINQTNA+DLMRLS PGTQ+KEA+LPAPMVNFATGLG+GFS+ETY+QQGW+ Sbjct: 201 WGESLFIPGGINQTNALDLMRLSQPGTQMKEAVLPAPMVNFATGLGKGFSIETYLQQGWQ 260 Query: 247 SNYFPPVGSYWSTATVGSGADALGVPVTGRPRSTGQYGVALRYTPPGADVNFGLYVMNYH 306 NYFPPVGSYWS T+G+GA LGVP T PRS+GQYGVALRY+P +++NFGLY+MNYH Sbjct: 261 RNYFPPVGSYWSIGTIGNGAPELGVPTTSTPRSSGQYGVALRYSPKDSEMNFGLYLMNYH 320 Query: 307 DKSPVLSTANTA-SGLGYSYLEDRKMVGLSANFPLGNWAIGTELSYRPKDAVSLN----G 361 DKSPV+ST+ ++ SG GYSYL+DRKM+G S NFP+GNWA+GTELSYRPKD ++LN G Sbjct: 321 DKSPVMSTSTSSLSGFGYSYLQDRKMIGASMNFPVGNWAVGTELSYRPKDPITLNTSTAG 380 Query: 362 SVQNANGGLCQTNGKCYIETEKYQLAITGMLSLTPSEHGAVLKTL-GADTATLMVEAVAI 420 + NG C NG CY+ET KYQLA+TG+LS+TPS++ +LK L GADTATLM EAV I Sbjct: 381 NSPTTNGTGCLANGNCYVETAKYQLAVTGLLSMTPSDNPTILKALGGADTATLMAEAVGI 440 Query: 421 KYPNLKNAYGGIPVAAGLWGWGYDTTANASNTLANGGNTSGVGSATSYGYNFDFSWVYDG 480 YPN+K+AY GIPVAAG WGWGYDT+ANA T A G VG+A SYGYN DFSWVYDG Sbjct: 441 YYPNMKSAYQGIPVAAGNWGWGYDTSANARATGA--GTPPSVGTALSYGYNLDFSWVYDG 498 Query: 481 SVIPGWQVIPEVYFFHAVKGRTPNATATFMEGAKMANFTVTFTQNPAKWQVALNFAKFWG 540 S+IPGWQV+PE+++F A+ GRTPN TFM+GAK ANF V+F QNPAKWQ +LN+A FWG Sbjct: 499 SLIPGWQVVPEIFYFQALHGRTPNFAGTFMQGAKSANFIVSFIQNPAKWQFSLNYAMFWG 558 Query: 541 GASVFDQPLRDRSFYGMTISRNF 563 G ++FDQPLR R+F G T + NF Sbjct: 559 GDTIFDQPLRGRNFVGATATYNF 581 >ref|YP_004234203.1| hypothetical protein Acav_1718 [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX45636.1| protein of unknown function DUF1302 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 549 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 309/566 (54%), Positives = 403/566 (71%), Gaps = 24/566 (4%) Query: 2 KNHLQTRVIALAAATLCSGAAQAITFEGETVSGNFDSTVSLGVGVRASKQSCGLIIGSSG 61 K+ L R ALAAA L A A+TFE E + G+FDSTV++G G+R +C L+ Sbjct: 4 KHSLHLRTTALAAAALLGTGADAMTFETENIRGSFDSTVTIGTGIRMKDPACTLV----- 58 Query: 62 GSAAAASGPSAPGGCADALSSLNDQGDLNYNRGDRFTTYLKGTHELLLNMPEDVKFLGRV 121 A A+G AP GC S+L DQG+LNY +GD FTTYLKG+HELLL +P D+ FLGRV Sbjct: 59 --NAGATGDGAPAGCLAPTSALGDQGNLNYAKGDAFTTYLKGSHELLLKLPSDITFLGRV 116 Query: 122 SWLRDYSATRSTGNISGANTTG--RALSDDATNELHSKVRLLDLWVSKSFDLGEERARIR 179 +W++D++A+ +TG ++ +G L+ DA +L K RLLDLWVSKSFD+G++RAR+R Sbjct: 117 NWIKDFTASDTTGYLAAGAPSGLRDGLAPDARRDLRFKARLLDLWVSKSFDIGDQRARVR 176 Query: 180 VGNQVVNWGESLFIAGGINQTNAIDLMRLSNPGTQLKEAILPAPMVNFATGLGRGFSVET 239 VGNQV+NWGESLF++GGIN TNA+D+MR S PGTQLKE +LPAPMV+ A+GLG G +VE Sbjct: 177 VGNQVINWGESLFLSGGINSTNAVDVMRASQPGTQLKEVLLPAPMVSVASGLGHGLNVEA 236 Query: 240 YVQQGWESNYFPPVGSYWSTAT-VGSGADALGVPVTGRPRSTGQYGVALRYTPPGADVNF 298 YVQ W NY PP GSYWSTA +G G D G+ V +PR++GQ+GVALRY P G +N Sbjct: 237 YVQTHWNGNYMPPTGSYWSTANGLGKGHDTYGL-VEAKPRNSGQWGVALRYQPEGTSLNL 295 Query: 299 GLYVMNYHDKSPVLSTANTASG-LGYSYLEDRKMVGLSANFPLGNWAIGTELSYRPKDAV 357 G YV+NY DK S+ +G G+++ E+R++ G+SAN P+G+W++GTELSYRP+DAV Sbjct: 296 GAYVLNYQDKGANFSSNVNGTGRAGWAFAENRRLYGVSANMPVGDWSVGTELSYRPRDAV 355 Query: 358 SLNGSVQNANGGLCQTNGKCYIETEKYQLAITGMLSLTPSEHGAVLKTLGADTATLMVEA 417 SLN +A G G C+++ +K+Q +TG+ S+TPS +L LGA TATLM E Sbjct: 356 SLN----SAATGCASQGGNCWVDEKKFQWHLTGLYSVTPSNGQWLLDLLGASTATLMAET 411 Query: 418 VAIKYPNLKNAYGGIPVAAGLWGWGYDTTANASNTLANGGNTSGVGSATSYGYNFDFSWV 477 V ++YP+L+ YG P++AG WGWG + A AS S +GS T++GYN DFSWV Sbjct: 412 VVVRYPHLRQLYGADPISAGAWGWGQEFDAGAS--------PSPMGSKTAWGYNLDFSWV 463 Query: 478 YDGSVIPGWQVIPEVYFFHAVKGRTPNATATFMEGAKMANFTVTFTQNPAKWQVALNFAK 537 YDG+VIPGWQVIPE+Y+F AVKGRTPNA MEGAK N TV+F QNPAKWQ ++N+A Sbjct: 464 YDGTVIPGWQVIPEIYYFQAVKGRTPNAAGQLMEGAKSINLTVSFVQNPAKWQASINYAA 523 Query: 538 FWGGASVFDQPLRDRSFYGMTISRNF 563 F+GG VFDQPLRDR++ G T+SRNF Sbjct: 524 FFGGKRVFDQPLRDRNYLGFTLSRNF 549 >ref|YP_348481.1| hypothetical protein Pfl01_2750 [Pseudomonas fluorescens Pf0-1] gb|ABA74491.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 548 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 272/552 (49%), Positives = 352/552 (63%), Gaps = 33/552 (5%) Query: 22 AQAITFEGETVSGNFDSTVSLGVGVRASKQSCGLIIGSSGGSAAAASGPSAPGGCADALS 81 A A TFE E + G+FDST+++G+G+R + C LI S GG + P GC + Sbjct: 20 AMAFTFETENIRGSFDSTLAVGMGLRTESRGCNLITSSPGGH-------NPPSGCLAPSA 72 Query: 82 SLNDQGDLNYNRGDRFTTYLKGTHELLLNMPEDVKFLGRVSWLRDYSATRSTGNISGANT 141 ++ DQGDLNY+RGD FT Y+KGTHEL+L PED F+ R SW+RD++AT ++G +S Sbjct: 73 NIGDQGDLNYDRGDLFTNYIKGTHELVLKFPEDYTFMARGSWIRDFAATDTSGALSANRP 132 Query: 142 TG---RALSDDATNELHSKVRLLDLWVSKSFDLGEERARIRVGNQVVNWGESLFIAGGIN 198 G L+ A ++L K RLLDLWVSKSFD+GE+R R R+GNQV+NWGESLF AGGIN Sbjct: 133 EGVGSDGLTSSARDDLEFKARLLDLWVSKSFDVGEQRVRARLGNQVINWGESLFAAGGIN 192 Query: 199 QTNAIDLMRLSNPGTQLKEAILPAPMVNFATGLGRGFSVETYVQQGWESNYFPPVGSYWS 258 TNA D+M LS PGTQLKEA+LPAPM++ A+GLG G ++E Y Q W + PPVGSYWS Sbjct: 193 NTNAYDVMALSRPGTQLKEALLPAPMLSLASGLGAGVNIEAYWQFNWNKSELPPVGSYWS 252 Query: 259 TA-TVGSGADALGVPVTGRPRSTGQYGVALRYTPPGADVNFGLYVMNYHDKSP-----VL 312 T +G G A G R+ GQ+GV+LR+ P D+N GLYVM YHDK P VL Sbjct: 253 TTHALGEGRGAYGYD-EKDARNGGQWGVSLRWQPDNTDLNLGLYVMRYHDKLPSLSMQVL 311 Query: 313 STANTASGLGYSYLEDRKMVGLSANFPLGNWAIGTELSYRPKDAVSLNGSVQNANGGLCQ 372 A + Y EDR M G+SAN P+G+WA+GTELSYRPKDAV LN + C Sbjct: 312 DPETFALAQTWKYPEDRMMYGISANMPVGDWALGTELSYRPKDAVPLNPVID-----ACA 366 Query: 373 TN-GKCYIETEKYQLAITGMLSLTPSEHGAVLKTLGADTATLMVEAVAIKYPNLKNAYGG 431 +N GKC+ + +K Q +TG+ S+TPS +L GA T TL+ E V +KYP L N Y G Sbjct: 367 SNGGKCWKDEKKLQWHLTGIYSMTPSNSPTLLDLTGASTGTLLSELVVVKYPGLHNEYAG 426 Query: 432 IPVAAGLWGWGYDTTANASNTLANGGNTSGVGSATSYGYNFDFSWVYDGSVIPGWQVIPE 491 P+AAGL W D + S G+ TS G + DFS YD ++IPGWQV P Sbjct: 427 EPIAAGLNTWQLDPSIPP----------SAKGNKTSSGISLDFSLTYDNTLIPGWQVTPG 476 Query: 492 VYFFHAVKGRTPNATATFMEGAKMANFTVTFTQNPAKWQVALNFAKFWGGASVFDQPLRD 551 V++ ++KGRTPN +ATF E A N + F +NPA WQ++ N+AKF GG + +DQ LRD Sbjct: 477 VFYSQSIKGRTPNLSATFTEDASSMNLYLNFVRNPASWQISANYAKFMGGKTPYDQLLRD 536 Query: 552 RSFYGMTISRNF 563 R + G+ +SR Sbjct: 537 RDYVGLVVSRTL 548 >ref|NP_744955.1| hypothetical protein PP_2811 [Pseudomonas putida KT2440] gb|AAN68419.1|AE016474_8 conserved hypothetical protein [Pseudomonas putida KT2440] Length = 548 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 273/553 (49%), Positives = 352/553 (63%), Gaps = 35/553 (6%) Query: 22 AQAITFEGETVSGNFDSTVSLGVGVRASKQSCGLIIGSSGGSAAAASGPSAPGGCADALS 81 A TFE ET++G+FDST++ G+G+R + C LI +G + P GC S Sbjct: 20 AMGFTFETETLNGSFDSTITAGMGLRTESRGCNLI-------NQGPTGHNVPSGCLAQSS 72 Query: 82 SLNDQGDLNYNRGDRFTTYLKGTHELLLNMPEDVKFLGRVSWLRDYSATRSTGNIS---G 138 + DQGDLNY+RGD FT YLKGTHELLL MPEDV F+ R +W+RD++AT +TG +S Sbjct: 73 GVADQGDLNYDRGDMFTNYLKGTHELLLKMPEDVTFMARGTWIRDFAATDTTGTLSFNTP 132 Query: 139 ANTTGRALSDDATNELHSKVRLLDLWVSKSFDLGEERARIRVGNQVVNWGESLFIAGGIN 198 + LSDDA ++L K RLLDLWVSK FD+G +R R R+GNQV+NWGESLF+AGGIN Sbjct: 133 ESVGSNGLSDDARDDLAFKARLLDLWVSKGFDVGGQRVRARLGNQVINWGESLFVAGGIN 192 Query: 199 QTNAIDLMRLSNPGTQLKEAILPAPMVNFATGLGRGFSVETYVQQGWESNYFPPVGSYWS 258 TNA D L+ PG QLKEA+LPAPM++ A+GLG G +VE Y Q W + PPVGSYWS Sbjct: 193 NTNAYDYQALARPGVQLKEAVLPAPMLSVASGLGSGVNVEAYYQFRWNKSELPPVGSYWS 252 Query: 259 -TATVGSGADALGVPVTGRPRSTGQYGVALRYTPPGADVNFGLYVMNYHDKSPVLSTA-- 315 T +G G G R +GQ+G++LR+ P +D+N+G YVM YHDK P L A Sbjct: 253 NTNALGEGRGDYGFS-EKDARDSGQWGLSLRWQPEDSDINYGFYVMRYHDKLPSLRVAIL 311 Query: 316 --NT-ASGLGYSYLEDRKMVGLSANFPLGNWAIGTELSYRPKDAVSLNGSVQNANGGLCQ 372 NT A+ + Y E+R M G+SAN P+G+WA+GTELSYRPKD+V LN V LC Sbjct: 312 DPNTFAAAPTWEYQENRMMYGVSANMPIGDWAVGTELSYRPKDSVMLNPVVD-----LCS 366 Query: 373 TN-GKCYIETEKYQLAITGMLSLTPSEHGAVLKTLGADTATLMVEAVAIKYPNLKNAYGG 431 +N GKC+ + +K+Q +TG+ S TPS +L GA T TL+ E V IKYP L + G Sbjct: 367 SNGGKCWKDEKKFQWHLTGLYSFTPSNSPTLLDFTGASTGTLLSELVVIKYPGLHDEVNG 426 Query: 432 IPVAAGLWGWGYD-TTANASNTLANGGNTSGVGSATSYGYNFDFSWVYDGSVIPGWQVIP 490 P+A GL W D TA S G TS G N DFS YDG+++PGWQV P Sbjct: 427 EPLAPGLNAWQLDPATAPKSR-----------GDKTSSGINLDFSLTYDGTLLPGWQVTP 475 Query: 491 EVYFFHAVKGRTPNATATFMEGAKMANFTVTFTQNPAKWQVALNFAKFWGGASVFDQPLR 550 V++ ++ GRTPN +ATF E A N + F +NPA WQ++LN+AKF GG + +DQ R Sbjct: 476 GVFYSRSLGGRTPNLSATFTEDASSMNLYLNFVRNPASWQISLNYAKFMGGETPYDQLYR 535 Query: 551 DRSFYGMTISRNF 563 DR + G+ ISR Sbjct: 536 DRDYVGIAISRTL 548