BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3369.p (494 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776913.1| hypothetical protein Hsero_3526 [Herbaspiril... 837 0.0 ref|YP_003777320.1| hypothetical protein Hsero_3941 [Herbaspiril... 704 0.0 ref|YP_004234204.1| hypothetical protein Acav_1719 [Acidovorax a... 569 e-160 ref|YP_002889949.1| hypothetical protein Tmz1t_2973 [Thauera sp.... 545 e-153 ref|YP_348482.1| hypothetical protein Pfl01_2751 [Pseudomonas fl... 497 e-138 >ref|YP_003776913.1| hypothetical protein Hsero_3526 [Herbaspirillum seropedicae SmR1] gb|ADJ65005.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 453 Score = 837 bits (2162), Expect = 0.0, Method: Composition-based stats. Identities = 429/453 (94%), Positives = 442/453 (97%) Query: 42 MKVIHMSAMALALASGFAHAATPADLGGSLTPLGGDKAGGNGVPDWKEDNVVLPGWSYGK 101 MK+ MS ALALA+ FAHAATPADLG SLTPLGGDKAGGNGVPDWK++NV LPGWSYGK Sbjct: 1 MKITKMSVTALALAAAFAHAATPADLGASLTPLGGDKAGGNGVPDWKDENVTLPGWSYGK 60 Query: 102 LRRDFFKYKDEKKTETIDASNVDKYASKLSAGQVALIKQIKGYKMDVYPSHRYCSAPDFV 161 LRRDFFKYKD+KK+ETIDASNVDKYASKLSAGQ+ALIKQIKGYKMDVYPSHRYCSAPDFV Sbjct: 61 LRRDFFKYKDDKKSETIDASNVDKYASKLSAGQIALIKQIKGYKMDVYPSHRYCSAPDFV 120 Query: 162 VENTKKNTSAKLGADGWSLAEAVVPGIPFPVPKSGEEVMYNSKMRYRGVAQEWKSTITAV 221 V+NTKKNTSAKLGADGWSLAEAVVPGIPFP+PKSGEEVMYNSKMRYRGVAQEWKSTITAV Sbjct: 121 VDNTKKNTSAKLGADGWSLAEAVVPGIPFPLPKSGEEVMYNSKMRYRGVAQEWKSTITAV 180 Query: 222 SPRKGSSEWIKAGSQQTMFFPWAAKGSVNLSTLPPVEYYTYFAYNSPTALAGQALSLTTF 281 SPRKG SEWIKAGSQQTMFFPWAAKGSVNLSTLPPVEYYTYFAYNSPTALAGQALSLTTF Sbjct: 181 SPRKGGSEWIKAGSQQTMFFPWAAKGSVNLSTLPPVEYYTYFAYNSPTALAGQALSLTTF 240 Query: 282 LNQAGGETFYYFPGQRRVRRMPSYAYDSPQIGMENQYTLDEPMVFNGTIDRFDWKLVGKK 341 LNQ GGETFYYFPGQRRVRRMPSYAYDSPQIGMENQYTLDEPMVFNGTIDRFDWKLVGKK Sbjct: 241 LNQPGGETFYYFPGQRRVRRMPSYAYDSPQIGMENQYTLDEPMVFNGTIDRFDWKLVGKK 300 Query: 342 EMYVPYGSFGATDFKAKFEDVAGDESIAESARRYELHRVWVVEATVKAGVRHLAPKRTFY 401 EMYVPYGSFGATDFKAKFEDVAG+E IAE+ARRYELHRVWVVEATVKAGVRHLAPKRTFY Sbjct: 301 EMYVPYGSFGATDFKAKFEDVAGEEYIAENARRYELHRVWVVEATVKAGVRHLAPKRTFY 360 Query: 402 VDEDSWNLVAADDYDAQGKLWKHREAYVIPVYETGSCDQAGFAQYNLAEGRYVFDLHAAG 461 VDEDSWNLVAADDYDAQGKLWKHREAY+IPVYETGSCDQAGF QYNLAEGRYVFDLH+AG Sbjct: 361 VDEDSWNLVAADDYDAQGKLWKHREAYIIPVYETGSCDQAGFTQYNLAEGRYVFDLHSAG 420 Query: 462 TGKDMAWEVDGKGNPRAKASFYSADNLRAISDR 494 TGKDMAWEVDGKGNPRAKASFYSADNLRAISDR Sbjct: 421 TGKDMAWEVDGKGNPRAKASFYSADNLRAISDR 453 >ref|YP_003777320.1| hypothetical protein Hsero_3941 [Herbaspirillum seropedicae SmR1] gb|ADJ65412.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 454 Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats. Identities = 338/454 (74%), Positives = 390/454 (85%), Gaps = 1/454 (0%) Query: 42 MKVIHMSAMALALASGFAHAATPADLGGSLTPLGGDKAGGNGVPDWKEDNVVLPGWSYGK 101 MK + LA+ + AHAA+ DLG +LTPLGGDKA G GVP+WK +NV LPGWSYGK Sbjct: 1 MKRTILGLSILAVGATLAHAASVQDLGTTLTPLGGDKAAGQGVPEWKAENVELPGWSYGK 60 Query: 102 LRRDFFKYKDEKKTETIDASNVDKYASKLSAGQVALIKQIKGYKMDVYPSHRYCSAPDFV 161 LR+D+FKYKDEK TE IDASNVDKYA L+ GQVALIKQ+KGYKMD+YP+HRYC+APDFV Sbjct: 61 LRKDYFKYKDEKPTEVIDASNVDKYADHLTPGQVALIKQVKGYKMDIYPTHRYCAAPDFV 120 Query: 162 VENTKKNTS-AKLGADGWSLAEAVVPGIPFPVPKSGEEVMYNSKMRYRGVAQEWKSTITA 220 VENTKKN + K+GADGWSLAEA VPGIPFP+PK+G EVMYNSKMRYRG+ ++ +TITA Sbjct: 121 VENTKKNVADGKIGADGWSLAEANVPGIPFPLPKTGLEVMYNSKMRYRGLGVDFPNTITA 180 Query: 221 VSPRKGSSEWIKAGSQQTMFFPWAAKGSVNLSTLPPVEYYTYFAYNSPTALAGQALSLTT 280 VSPRKGS+EWIKA Q T+F+P KGS LSTL VE+YTY AY+SPTALAGQAL++TT Sbjct: 181 VSPRKGSNEWIKASQQLTLFYPSNVKGSTKLSTLGGVEFYTYVAYSSPTALAGQALTVTT 240 Query: 281 FLNQAGGETFYYFPGQRRVRRMPSYAYDSPQIGMENQYTLDEPMVFNGTIDRFDWKLVGK 340 +LN+ G ETFYYFPGQRRVRRMPSYAYD+PQIGMENQYT+DEP VFNGT+DRFDWKLVGK Sbjct: 241 YLNRPGAETFYYFPGQRRVRRMPSYAYDAPQIGMENQYTMDEPTVFNGTMDRFDWKLVGK 300 Query: 341 KEMYVPYGSFGATDFKAKFEDVAGDESIAESARRYELHRVWVVEATVKAGVRHLAPKRTF 400 KE+Y+ Y SFGA +FKA F+D+A + +AE+ARRYELHRVWVVEATVK GVRHLAPKRTF Sbjct: 301 KEIYIAYNSFGANNFKANFDDIAKPDFVAENARRYELHRVWVVEATVKPGVRHLAPKRTF 360 Query: 401 YVDEDSWNLVAADDYDAQGKLWKHREAYVIPVYETGSCDQAGFAQYNLAEGRYVFDLHAA 460 YVDEDSWNLV +DDYDAQ KLWKHRE Y+IPVYETG+CD +GFAQYNLAEGRY+ D H+A Sbjct: 361 YVDEDSWNLVLSDDYDAQNKLWKHREGYIIPVYETGACDLSGFAQYNLAEGRYLMDSHSA 420 Query: 461 GTGKDMAWEVDGKGNPRAKASFYSADNLRAISDR 494 GTGKD+ WE + K NPR + +FYSADNLRAISDR Sbjct: 421 GTGKDIRWETEAKDNPRLRDNFYSADNLRAISDR 454 >ref|YP_004234204.1| hypothetical protein Acav_1719 [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX45637.1| protein of unknown function DUF1329 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 465 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 281/427 (65%), Positives = 332/427 (77%), Gaps = 4/427 (0%) Query: 71 LTPLGGDKAGGN--GVPDWKEDNVVLPGWSYGKLRRDFFKYKDEKKTETIDASNVDKYAS 128 LTP G +K G +P W+ GW +GKLR + +K+KDEK TIDASN DKYA Sbjct: 40 LTPSGAEKEGNKDGSIPAWQGAEAPQAGWEWGKLRVESWKHKDEKPLLTIDASNADKYAD 99 Query: 129 KLSAGQVALIKQIKGYKMDVYPSHRYCSAPDFVVENTKKNT-SAKLGADGWSLAEAVVPG 187 KLSAGQ+A+++Q K Y+MDVYPSHR C PDFV NT+KN +AKL DGWSL EA VPG Sbjct: 100 KLSAGQLAMLRQRKDYRMDVYPSHRTCGVPDFVAANTRKNLGTAKLNDDGWSLKEATVPG 159 Query: 188 IPFPVPKSGEEVMYNSKMRYRGVAQEWKSTITAVSPRKGSSEWIKAGSQQTMFFPWAAKG 247 PFP+P SG E M+NSKMRYRGV ++K TITAVSPR+GS+EWI+A S+QT+F P AKG Sbjct: 160 YPFPIPSSGVEAMWNSKMRYRGVGIDYKGTITAVSPRRGSTEWIRADSEQTVFIPSGAKG 219 Query: 248 SVNLSTLPPVEYYTYFAYNSPTALAGQALSLTTFLNQAGGETFYYFPGQRRVRRMPSYAY 307 S LS+LPPVE+Y YF Y +P ALAGQAL++T ++NQA ETFYYFPGQRRVRRMP+Y++ Sbjct: 220 STQLSSLPPVEFYVYFGYVAPAALAGQALAITQYINQAENETFYYFPGQRRVRRMPTYSH 279 Query: 308 DSPQIGMENQYTLDEPMVFNGTIDRFDWKLVGKKEMYVPYGSFGATDFKAKFEDVAGDES 367 D+PQIGMENQYTLDEP VFNG +DRFDWKLVGKKEMYVPY +FGA DFKAKFEDVA + Sbjct: 280 DAPQIGMENQYTLDEPQVFNGALDRFDWKLVGKKEMYVPYNAFGAFDFKAKFEDVAKPDF 339 Query: 368 IAESARRYELHRVWVVEATVKAGVRHLAPKRTFYVDEDSWNLVAADDYDAQGKLWKHREA 427 IA++ RRYELHRVWV+EATVK+G+RH APKRT Y+DEDSW V DD+D Q KL K RE Sbjct: 340 IAQTHRRYELHRVWVIEATVKSGMRHSAPKRTIYLDEDSWAPVLMDDFDGQNKLAKMREG 399 Query: 428 YVIPVYETGSCDQAGFAQYNLAEGRYVFDLHAAGTGKDMAWEVDGKGNPRAKASFYSADN 487 ++IPVYETGSCD Q NLAEGRYVFD H G GKD+ W + G PR K FY++DN Sbjct: 400 FLIPVYETGSCDVMAMVQNNLAEGRYVFDTHTVGVGKDIRWFTEPTG-PRFKPGFYTSDN 458 Query: 488 LRAISDR 494 LRAIS+R Sbjct: 459 LRAISER 465 >ref|YP_002889949.1| hypothetical protein Tmz1t_2973 [Thauera sp. MZ1T] gb|ACR01572.1| protein of unknown function DUF1329 [Thauera sp. MZ1T] Length = 455 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 274/430 (63%), Positives = 329/430 (76%), Gaps = 5/430 (1%) Query: 68 GGSLTPLGGDKAGG--NGVPDWKEDNVVLPGWSYGKLRRDFFKYKDEKKTETIDASNVDK 125 G +LTPLGG++AG +P W E + + PGWSYGK R D+FK+K +K TIDA+NVDK Sbjct: 28 GTTLTPLGGERAGNADGSIPAWTEGSALEPGWSYGKPRADYFKHKGDKPLFTIDAANVDK 87 Query: 126 YASKLSAGQVALIKQIKGYKMDVYPSHRYCSAPDFVVENTKKNTS-AKLGADGWSLAEAV 184 YA KL+ GQVA+IK K YK++VYPS RYCSAPDFV NTK N AK+GADGWSLAEA Sbjct: 88 YAGKLTEGQVAVIKGFKNYKLEVYPSRRYCSAPDFVQANTKANVGMAKIGADGWSLAEAT 147 Query: 185 VPGIPFPVPKSGEEVMYNSKMRYRGVAQEWKSTITAVSPRKGSSEWIKAGSQQTMFFPWA 244 VPGIPFP+P+SG EV++N+KM+Y GVA + K+ +SPR G S+WI+AGS QT ++PW Sbjct: 148 VPGIPFPLPQSGIEVLWNAKMKYAGVALDMKALWVMLSPRSGGSDWIEAGSTQTYYYPWG 207 Query: 245 AKGSVNLSTLPPVEYYTYFAYNSPTALAGQALSLTTFLNQAGGETFYYFPGQRRVRRMPS 304 KGS LS LPPVEY+TYF Y SPTALAGQAL +T++LN+ +TFYYFPGQRRVRRMPS Sbjct: 208 KKGSNKLSELPPVEYHTYFNYTSPTALAGQALVITSYLNKTS-DTFYYFPGQRRVRRMPS 266 Query: 305 YAYDSPQIGMENQYTLDEPMVFNGTIDRFDWKLVGKKEMYVPYGSFGATDFKAKFEDVAG 364 Y+YD+PQ+G ENQYTLDEP VFNGT DRFDWKLVGKKEM++ YGSFG D A V Sbjct: 267 YSYDAPQVGFENQYTLDEPRVFNGTPDRFDWKLVGKKEMFIGYGSFGMYDPAADRRKVVT 326 Query: 365 DESIAESARRYELHRVWVVEATVKAGVRHLAPKRTFYVDEDSWNLVAADDYDAQGKLWKH 424 + + A RYELHRVWVVEAT K GVRH+APKR FY DEDSW L+ A+DYDAQGKLWK Sbjct: 327 PDGVDPKATRYELHRVWVVEATAKDGVRHVAPKRRFYFDEDSWALMGAEDYDAQGKLWKV 386 Query: 425 REAYVIPVYETGSCDQAGFAQYNLAEGRYVFDLHAAGTGKDMAWEVDGKGNPRAKASFYS 484 RE+++IPV ETG+CD F QY+L GR +FD G GKDM W V+ +P+ K +FY+ Sbjct: 387 RESFLIPVAETGACDNPAFVQYDLVSGRVLFDQAGMGAGKDMVWAVEAD-DPKYKDAFYT 445 Query: 485 ADNLRAISDR 494 DNLRAISDR Sbjct: 446 PDNLRAISDR 455 >ref|YP_348482.1| hypothetical protein Pfl01_2751 [Pseudomonas fluorescens Pf0-1] gb|ABA74492.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 474 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 263/462 (56%), Positives = 322/462 (69%), Gaps = 14/462 (3%) Query: 44 VIHMSAMALALASGF---AHAAT--PADLGGSLTPLGGDKAG-GNGV-PDWKEDNVVLPG 96 V+ +A AS F A AA PA LG LTPLGG+ A +GV P W G Sbjct: 16 VVRRCLIAAVAASTFICTAQAADKDPALLGTKLTPLGGEAAASADGVIPAWTPPGPQGGG 75 Query: 97 WSYGKLRRDFFKYKDEKKTETIDASNVDKYASKLSAGQVALIKQIKGYKMDVYPSHRYCS 156 WS+G++R +K+KD+K +ID+ NV KY KLS GQV + K+I GY+MDVYP+ R C Sbjct: 76 WSHGQVRGQQWKFKDDKPLFSIDSGNVAKYTGKLSPGQVEMFKKIPGYRMDVYPTRRSCG 135 Query: 157 APDFVVENTKKNTS-AKLGADGWSLAEAVVPGIPFPVPKSGEEVMYNSKMRYRGVAQEWK 215 PDFV ENTKKN AKL DG +L EA VPGIPFP P SG EVM+N KMRYRGV + Sbjct: 136 VPDFVAENTKKNVGFAKLDGDGLALQEAYVPGIPFPFPTSGAEVMWNMKMRYRGVGFDMS 195 Query: 216 STITAVSPRKGSSEWIKAGSQQTMFFPWAAKGSVNLSTLPPVEYYTYFAYNSPTALAGQA 275 T++ +SPRKGS +W++ + M+ PW KGS S+ +E TYF+Y+ P ALAGQA Sbjct: 196 KTVSGISPRKGSEDWLRTSTDWFMYTPWGVKGSALFSSFDRLEVATYFSYSDPAALAGQA 255 Query: 276 LSLTTFLNQAGGE--TFYYFPGQRRVRRMPSYAYDSPQIGMENQYTLDEPMVFNGTIDRF 333 +TT +AG + TFYYFPGQRRVRRMP+Y+YD+PQIG++NQYT+DE VF G +DRF Sbjct: 256 GVVTT---KAGEQATTFYYFPGQRRVRRMPAYSYDAPQIGLDNQYTIDESNVFFGPMDRF 312 Query: 334 DWKLVGKKEMYVPYGSFGATDFKAKFEDVAGDESIAESARRYELHRVWVVEATVKAGVRH 393 DWKLVGK+EM VPY SFGA D AK EDVA + IA +RRYELHRVWVVEATV+ G+RH Sbjct: 313 DWKLVGKQEMLVPYNSFGAYDNSAKIEDVAKRDFIAPESRRYELHRVWVVEATVRQGMRH 372 Query: 394 LAPKRTFYVDEDSWNLVAADDYDAQGKLWKHREAYVIPVYETGSCDQAGFAQYNLAEGRY 453 APKR FY+DEDSWN + A DYD QG++WK RE Y IPVYETG+CD AQYNL +GRY Sbjct: 373 QAPKRLFYIDEDSWNALMAVDYDKQGQIWKVREGYTIPVYETGTCDMEAQAQYNLVDGRY 432 Query: 454 VFDLHAAGTGK-DMAWEVDGKGNPRAKASFYSADNLRAISDR 494 ++D+ + GTGK D W D NPR K FY++DNLRA S+R Sbjct: 433 LYDMTSIGTGKNDHRWLTDSANNPRLKRDFYTSDNLRATSER 474