BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3367.p (328 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776912.1| AraC family transcription regulator protein ... 577 e-163 ref|YP_001021840.1| AraC family transcriptional regulator [Methy... 168 1e-39 ref|YP_982847.1| helix-turn-helix domain-containing protein [Pol... 142 6e-32 ref|ZP_02465245.1| HTH-type transcriptional regulator eutR [Burk... 142 6e-32 ref|ZP_02357494.1| HTH-type transcriptional regulator eutR [Burk... 142 7e-32 >ref|YP_003776912.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65004.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 331 Score = 577 bits (1488), Expect = e-163, Method: Composition-based stats. Identities = 289/330 (87%), Positives = 307/330 (93%), Gaps = 3/330 (0%) Query: 1 MHADHFSVHAEQFSDVDQQASTLTGWEQEYQQLGSGRFVGALAMVQTDEFCFIRETTNTA 60 MH+DHFSVHA QFSDVD+QAS LTGWEQEYQQLGSGRF GAL MVQT++FCFIRE TNTA Sbjct: 1 MHSDHFSVHAVQFSDVDEQASMLTGWEQEYQQLGSGRFDGALGMVQTEDFCFIRERTNTA 60 Query: 61 LHERIVPPPEQMVIGICNTSARGHLLNGRPLTQDQLIVLDGSRAHHIRTNGPIELLGISV 120 LHER+VPPP QMVIGICN+S RGHLLNGRPL QDQLIVLDGSRAHHIRT GPIEL+GIS+ Sbjct: 61 LHERMVPPPGQMVIGICNSSERGHLLNGRPLGQDQLIVLDGSRAHHIRTTGPIELMGISM 120 Query: 121 QRELFLSQLHEQDEASVRKWLDLSVLQLDAATAGMLRHYFSVAFDLLNTPAGKATRPISP 180 QR+LFLSQLHEQD+ASVRKWLDLSVLQLD ATAGMLRHYFS+AFDLLNT GK PISP Sbjct: 121 QRDLFLSQLHEQDDASVRKWLDLSVLQLDPATAGMLRHYFSLAFDLLNTAQGKTVHPISP 180 Query: 181 RALASTAISNVALALSLNQGHHELESTLPSRQRRERIVQNAIDYMRTHAGEEIGILDVCR 240 RALAST ISNVALALSLN G ++LESTLPSRQRRERIVQNAIDYMR HAGEEIGILDVCR Sbjct: 181 RALASTVISNVALALSLNHGSNDLESTLPSRQRRERIVQNAIDYMRAHAGEEIGILDVCR 240 Query: 241 ATHVSRRTLQYCFEERLDISPLQYLKALRLNAAHREIKRRSGEERGHD---TIGNLAALC 297 ATHVSRRTLQYCFEERLDISPLQYLKALRLNAAHREIKRR+GE+R HD TIGNLAALC Sbjct: 241 ATHVSRRTLQYCFEERLDISPLQYLKALRLNAAHREIKRRTGEDRAHDRHATIGNLAALC 300 Query: 298 GFNHPSRFASEYKKMFGVLPSETVLKAVAE 327 GFNHPSRFASEYKKMFGVLPSETVL+AV++ Sbjct: 301 GFNHPSRFASEYKKMFGVLPSETVLRAVSD 330 >ref|YP_001021840.1| AraC family transcriptional regulator [Methylibium petroleiphilum PM1] gb|ABM95605.1| transcriptional regulator, AraC family [Methylibium petroleiphilum PM1] Length = 318 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 118/316 (37%), Positives = 164/316 (51%), Gaps = 17/316 (5%) Query: 12 QFSDVDQQASTLTGWEQEYQQLGSGRFVGALAMVQTDEFCFIRETTNTALHERIVPPPEQ 71 Q +DVD QA L+GW+Q Y+QLG GRF G+ V +RE+TN L E+I PP + Sbjct: 5 QSADVDDQAQALSGWQQRYEQLGCGRFRGSARQVVMAGGTVLRESTNRQLREQIRPPSDC 64 Query: 72 MVIGICNTSARGHLLNGRPLTQDQLIVLDGSRAHHIRTNGPIELLGISVQRELFLSQLHE 131 +V+ I + A G + GRPL D L+V+ G + + G ++LL +SV R L Sbjct: 65 LVLAIPLSVAPGSVFAGRPLDGDALMVISGHEEYELVAAGELDLLALSVDRRRLGGMLAP 124 Query: 132 QDEASVRKWLDLSVLQ----LDAATAGMLRHYFSVAFDLLNTPAGKATRPI--SPRALAS 185 ++ +WL + Q L TAG +R A A I P + + Sbjct: 125 EE----IEWLARAERQRRWALAPDTAGAVRSQLLAVCSAAGRCAPGAVIDIENEPALIGA 180 Query: 186 TAISNVALALSLNQGHHELESTLPSR-QRRERIVQNAIDYMRTHAGEEIGILDVCRATHV 244 T VALA+S + G +P R R R+V+ AI+++R + E+IGI ++C A Sbjct: 181 TLAHTVALAMS-DGGADRGAVGIPRRADSRLRVVKRAIEFIRANLQEDIGIPEICAAACA 239 Query: 245 SRRTLQYCFEERLDISPLQYLKALRLNAAHREIKRRSGEERGHDTIGNLAALCGFNHPSR 304 SRR+LQYCFEE L +P YL+ALRLN A R +K + G I LA GF+ S Sbjct: 240 SRRSLQYCFEEFLHTTPQAYLRALRLNEARRRLK-----QPGDQPITLLACAMGFSSASH 294 Query: 305 FASEYKKMFGVLPSET 320 F YK MF LPS+T Sbjct: 295 FTRHYKLMFNELPSQT 310 >ref|YP_982847.1| helix-turn-helix domain-containing protein [Polaromonas naphthalenivorans CJ2] gb|ABM37926.1| transcriptional regulator, AraC family [Polaromonas naphthalenivorans CJ2] Length = 347 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 109/322 (33%), Positives = 164/322 (50%), Gaps = 23/322 (7%) Query: 12 QFSDVDQQASTLTGWEQEYQQLGSGRFVGALAMVQTDEFCFIRETTNTALHERIVPPPEQ 71 Q D D A LT WEQ Y Q+ G F G L ++ E T+ A+ + P+ Sbjct: 32 QAHDADDHARNLTAWEQRYDQVTRGPFHGTLTELRMPAMQVFMEHTSQAVRQSCCVWPDA 91 Query: 72 MVIGI---CNT----SARGHLLNGRPLTQDQLIVLDGSRAHHIRTNGPIELLGISVQREL 124 G+ NT S +NGR D ++V G+R + T + GI ++R+ Sbjct: 92 FWFGVPGGANTAGERSGMNARINGRLGDADTIMVRPGNREFELLTPADYAIYGIVIKRDS 151 Query: 125 FL---SQLHEQDEASVRKWLDLSVLQ-LDAATAGMLRHYFSVAFDLLNTPAGKATRPISP 180 L SQL + + W L + L A + L ++A +L A +P++ Sbjct: 152 LLVTASQLGCRID-----WAQLERAEVLHVAESARLACQQTLARLILQGRADSEGQPVAS 206 Query: 181 RALASTAISNVALALSLNQGHHELESTLP-SRQRRERIVQNAIDYMRTHAGEEIGILDVC 239 A A A V LA+ E++S + S RR+RIV A DY+ H + + + ++C Sbjct: 207 VACAEQA---VMLAVLSMLDASEVDSAVSNSFMRRQRIVARARDYVLGHRDQLVTVPELC 263 Query: 240 RATHVSRRTLQYCFEERLDISPLQYLKALRLNAAHREIKRRSGEERGHDTIGNLAALCGF 299 HVSRRTLQYCFE+ L ISP+QYL+ +RLN A RE++ R + R T+ ++AA GF Sbjct: 264 ERLHVSRRTLQYCFEDVLAISPIQYLRLIRLNGARRELRERCSDAR---TVRDIAADWGF 320 Query: 300 NHPSRFASEYKKMFGVLPSETV 321 H S+F+S+Y+K+FG PSE++ Sbjct: 321 WHFSQFSSDYRKLFGQSPSESL 342 >ref|ZP_02465245.1| HTH-type transcriptional regulator eutR [Burkholderia thailandensis MSMB43] Length = 342 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 100/313 (31%), Positives = 152/313 (48%), Gaps = 8/313 (2%) Query: 15 DVDQQASTLTGWEQEYQQLGSGRFVGALAMVQTDEFCFIRETTNTALHERIVPPPEQMVI 74 D D+QA L GW Q Y QL +GRFVG L + D RETT+ L + + Sbjct: 36 DADEQARNLIGWRQTYDQLAAGRFVGTLTELPLDTMKVFRETTSHTLRQACEVRGDAYWF 95 Query: 75 GICNTSARGHLLNGRPLTQDQLIVLDGSRAHHIRTNGPIELLGISVQRELFLSQLHEQDE 134 GI ++ RP+ D L G+ + T + G+ V+ + E + Sbjct: 96 GIPVARDGAARIDARPIAADALAFRPGNVEFELLTPAQFSIYGVVVRGAVLRRYAEEVER 155 Query: 135 ASVRKWLDLSVLQLDAATAGMLRHYFSVAFDLLNTPA-GKATRPISPRALASTAISNVAL 193 + + L L V + A + R +A L + A A P+S A +A Sbjct: 156 CGLDERLPL-VPVVRVGEARLTRLCALLAHRLDDADAMSAALAPLSDCARNDLQAEVLAA 214 Query: 194 ALSLNQGHHELESTLPSRQRRERIVQNAIDYMRTHAGEEIGILDVCRATHVSRRTLQYCF 253 L +T+ RR +IV A DY+ H +G+ ++C HVSRRTLQYCF Sbjct: 215 LFDLC-ASPAAAATVEHSSRRRKIVVAARDYVLAHRSRPVGVPELCEQLHVSRRTLQYCF 273 Query: 254 EERLDISPLQYLKALRLNAAHREIKRRSGEERGHDTIGNLAALCGFNHPSRFASEYKKMF 313 ++ L ++P YL+ALRLN R+++ R+ D++ ++AA GF H S+FA++Y++MF Sbjct: 274 QDVLGMAPATYLRALRLNGVRRDLRGRAA-----DSVQDVAAAWGFWHLSQFATDYRRMF 328 Query: 314 GVLPSETVLKAVA 326 G PSET+ A+A Sbjct: 329 GARPSETLRDALA 341 >ref|ZP_02357494.1| HTH-type transcriptional regulator eutR [Burkholderia oklahomensis EO147] Length = 341 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 98/313 (31%), Positives = 153/313 (48%), Gaps = 8/313 (2%) Query: 15 DVDQQASTLTGWEQEYQQLGSGRFVGALAMVQTDEFCFIRETTNTALHERIVPPPEQMVI 74 D D+QA L GW Q Y QL +GRFVG L + D RETT+ L + + Sbjct: 35 DADEQARNLIGWRQTYDQLAAGRFVGTLTELPLDTMKVFRETTSHTLRQACEVRGDAYWF 94 Query: 75 GICNTSARGHLLNGRPLTQDQLIVLDGSRAHHIRTNGPIELLGISVQRELFLSQLHEQDE 134 GI ++ RP+ D L G+ + T + G+ V+ + E + Sbjct: 95 GIPVARDGAARIDARPIAADALAFRPGNVEFELLTPAQFSIYGLVVRGAVLRRYAEEVER 154 Query: 135 ASVRKWLDL-SVLQLDAATAGMLRHYFSVAFDLLNTPAGKATRPISPRALASTAISNVAL 193 + + L L V+++ A L + D + + A P+S A +A Sbjct: 155 CGLDERLPLVPVVRVGEARLTRLCALLAQRLDDADAMSA-AGAPLSDCARNDLQAEVLAA 213 Query: 194 ALSLNQGHHELESTLPSRQRRERIVQNAIDYMRTHAGEEIGILDVCRATHVSRRTLQYCF 253 L ++T+ RR +IV A DY+ H +G+ ++C HVSRRTLQYCF Sbjct: 214 LFDLC-ASPAADATVEHSSRRRKIVAAARDYVLAHRSRPVGVPELCEQLHVSRRTLQYCF 272 Query: 254 EERLDISPLQYLKALRLNAAHREIKRRSGEERGHDTIGNLAALCGFNHPSRFASEYKKMF 313 ++ L ++P YL+ALRLN R+++ R+ D++ ++AA GF H S+FA++Y++MF Sbjct: 273 QDVLGMAPATYLRALRLNGVRRDLRGRAA-----DSVQDVAAAWGFWHLSQFATDYRRMF 327 Query: 314 GVLPSETVLKAVA 326 G PSET+ A+A Sbjct: 328 GARPSETLRDALA 340