BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3353.p (239 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776197.1| TRAP-type C4-dicarboxylate-binding periplasm... 364 6e-99 ref|YP_003774270.1| TRAP-type C4-dicarboxylate transport system ... 318 3e-85 ref|ZP_08274273.1| TRAP-type C4-dicarboxylate transport system, ... 311 7e-83 ref|YP_002501074.1| TRAP dicarboxylate transporter subunit DctP ... 303 2e-80 ref|ZP_03582499.1| C4-dicarboxylate-binding periplasmic protein ... 301 7e-80 >ref|YP_003776197.1| TRAP-type C4-dicarboxylate-binding periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ64289.1| TRAP-type C4-dicarboxylate-binding periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 344 Score = 364 bits (935), Expect = 6e-99, Method: Composition-based stats. Identities = 188/196 (95%), Positives = 191/196 (97%) Query: 44 EGKGRPRFKELAEKATHGRVKVEVYPNSTLYKDKEELEALQLGSVQMLAPSLAKFGPLGA 103 +GKG RFKELAEKAT GRVKVEVYPNSTLYKDKEELEALQLGSVQMLAPSLAKFGPLGA Sbjct: 48 KGKGAERFKELAEKATQGRVKVEVYPNSTLYKDKEELEALQLGSVQMLAPSLAKFGPLGA 107 Query: 104 KEFEVFDLPYIFPNKTVLKRVTEGPIGQGLFQKLESKGIKGLAYWDNGMKVMTANRPLHK 163 +EFEVFDLPYIFP+K VLKRVTEGPIGQGLFQKLE KGIKGLAYWDNGMKVMTANRPLHK Sbjct: 108 REFEVFDLPYIFPDKAVLKRVTEGPIGQGLFQKLEGKGIKGLAYWDNGMKVMTANRPLHK 167 Query: 164 VADFRALKMRIQSSKVLDEQFRALKANPQVLAFSEVYQAMQTGVVDGSENTPSNVYTQKM 223 VADFRALKMRIQSSKVLDEQFRALKANPQVLAFSEVYQAMQTGVVDGSENTPSNVYTQKM Sbjct: 168 VADFRALKMRIQSSKVLDEQFRALKANPQVLAFSEVYQAMQTGVVDGSENTPSNVYTQKM 227 Query: 224 HEVQSNLTVSDHGYIG 239 HEVQSNLTVSDHGYIG Sbjct: 228 HEVQSNLTVSDHGYIG 243 >ref|YP_003774270.1| TRAP-type C4-dicarboxylate transport system periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62362.1| TRAP-type C4-dicarboxylate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 334 Score = 318 bits (816), Expect = 3e-85, Method: Composition-based stats. Identities = 162/196 (82%), Positives = 176/196 (89%) Query: 44 EGKGRPRFKELAEKATHGRVKVEVYPNSTLYKDKEELEALQLGSVQMLAPSLAKFGPLGA 103 +GK RFKELAEKAT GRVK+EVYPNSTLYKDKEELEALQLG+VQMLAPSLAKFGPLG Sbjct: 40 KGKAAERFKELAEKATKGRVKIEVYPNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGV 99 Query: 104 KEFEVFDLPYIFPNKTVLKRVTEGPIGQGLFQKLESKGIKGLAYWDNGMKVMTANRPLHK 163 KEFEVFDLPYIFP K VL RVTEGPIG+ LF+KLE KGI GLAYWDNG KVM+AN+PLH Sbjct: 100 KEFEVFDLPYIFPTKEVLYRVTEGPIGKDLFKKLEPKGITGLAYWDNGFKVMSANKPLHH 159 Query: 164 VADFRALKMRIQSSKVLDEQFRALKANPQVLAFSEVYQAMQTGVVDGSENTPSNVYTQKM 223 ADFR LKMRIQSSKVLD Q RAL ANPQVLAFSEVYQA+QTGVVDG+EN PSN+YTQKM Sbjct: 160 PADFRGLKMRIQSSKVLDAQMRALGANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKM 219 Query: 224 HEVQSNLTVSDHGYIG 239 HEVQ ++TVS+HGY+G Sbjct: 220 HEVQKHVTVSNHGYLG 235 >ref|ZP_08274273.1| TRAP-type C4-dicarboxylate transport system, periplasmic component [Oxalobacteraceae bacterium IMCC9480] gb|EGF32246.1| TRAP-type C4-dicarboxylate transport system, periplasmic component [Oxalobacteraceae bacterium IMCC9480] Length = 337 Score = 311 bits (796), Expect = 7e-83, Method: Composition-based stats. Identities = 158/196 (80%), Positives = 174/196 (88%) Query: 44 EGKGRPRFKELAEKATHGRVKVEVYPNSTLYKDKEELEALQLGSVQMLAPSLAKFGPLGA 103 +GK RFKEL EK GRVKVE+YPNSTLYKDKEELEALQLG+VQMLAPSLAKFGPLG Sbjct: 43 KGKAAERFKELVEKNLKGRVKVELYPNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGV 102 Query: 104 KEFEVFDLPYIFPNKTVLKRVTEGPIGQGLFQKLESKGIKGLAYWDNGMKVMTANRPLHK 163 KEFE+FDLPYIFP K VL RVTEGPIG+ LF+KLESKGI GLAYWDNG KVM+AN+PL Sbjct: 103 KEFELFDLPYIFPGKDVLYRVTEGPIGKDLFKKLESKGITGLAYWDNGFKVMSANKPLKT 162 Query: 164 VADFRALKMRIQSSKVLDEQFRALKANPQVLAFSEVYQAMQTGVVDGSENTPSNVYTQKM 223 ADF+ LKMRIQSSKVLD + RAL ANPQVLAFSEVYQA+QTGVVDG+EN PSN+YTQKM Sbjct: 163 PADFKGLKMRIQSSKVLDAEMRALGANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKM 222 Query: 224 HEVQSNLTVSDHGYIG 239 HEVQSN+TVS+HGY+G Sbjct: 223 HEVQSNVTVSNHGYLG 238 >ref|YP_002501074.1| TRAP dicarboxylate transporter subunit DctP [Methylobacterium nodulans ORS 2060] gb|ACL60771.1| TRAP dicarboxylate transporter, DctP subunit [Methylobacterium nodulans ORS 2060] Length = 340 Score = 303 bits (775), Expect = 2e-80, Method: Composition-based stats. Identities = 154/196 (78%), Positives = 174/196 (88%) Query: 44 EGKGRPRFKELAEKATHGRVKVEVYPNSTLYKDKEELEALQLGSVQMLAPSLAKFGPLGA 103 +G+G +FKELAEK T G+VKVEVYPNS L+KDKEE+EALQLG+VQMLAPSLAKFGPLGA Sbjct: 49 KGRGADKFKELAEKYTAGKVKVEVYPNSQLFKDKEEVEALQLGAVQMLAPSLAKFGPLGA 108 Query: 104 KEFEVFDLPYIFPNKTVLKRVTEGPIGQGLFQKLESKGIKGLAYWDNGMKVMTANRPLHK 163 KEFEVFDLPYI P+K L+RVTEGP+G+ LF+KLESKGI GLAYWDNG K+M+ANRPL + Sbjct: 109 KEFEVFDLPYILPDKAALRRVTEGPLGKRLFEKLESKGITGLAYWDNGFKIMSANRPLRQ 168 Query: 164 VADFRALKMRIQSSKVLDEQFRALKANPQVLAFSEVYQAMQTGVVDGSENTPSNVYTQKM 223 ADFR LKMRIQSSKVL+ QFRAL A PQV+AFSEVYQ MQTGVVDGSENTPSN++TQK Sbjct: 169 PADFRGLKMRIQSSKVLEAQFRALGAIPQVMAFSEVYQGMQTGVVDGSENTPSNMFTQKH 228 Query: 224 HEVQSNLTVSDHGYIG 239 HEVQ T+SDHGYIG Sbjct: 229 HEVQKFATLSDHGYIG 244 >ref|ZP_03582499.1| C4-dicarboxylate-binding periplasmic protein [Burkholderia multivorans CGD1] gb|EEE02672.1| C4-dicarboxylate-binding periplasmic protein [Burkholderia multivorans CGD1] Length = 331 Score = 301 bits (770), Expect = 7e-80, Method: Composition-based stats. Identities = 150/196 (76%), Positives = 170/196 (86%) Query: 44 EGKGRPRFKELAEKATHGRVKVEVYPNSTLYKDKEELEALQLGSVQMLAPSLAKFGPLGA 103 +GK FK+LAE T+GRVKVEVYPNS LYKDKEELEALQLGSVQMLAPSLAKFGPLGA Sbjct: 39 KGKAADYFKKLAETRTNGRVKVEVYPNSQLYKDKEELEALQLGSVQMLAPSLAKFGPLGA 98 Query: 104 KEFEVFDLPYIFPNKTVLKRVTEGPIGQGLFQKLESKGIKGLAYWDNGMKVMTANRPLHK 163 KEFE+FDLPY+F + L +VT+GP+G+ L KLESKGI GLAYWDNG KVM+ANRPL + Sbjct: 99 KEFELFDLPYLFDSYDALHKVTDGPVGKRLMAKLESKGITGLAYWDNGFKVMSANRPLRE 158 Query: 164 VADFRALKMRIQSSKVLDEQFRALKANPQVLAFSEVYQAMQTGVVDGSENTPSNVYTQKM 223 ADFR LKMRIQSSKVLD QFRAL A PQV+AFSEVYQ +QTGVVDG+ENTPSN+YTQ+M Sbjct: 159 PADFRGLKMRIQSSKVLDAQFRALNAIPQVMAFSEVYQGLQTGVVDGTENTPSNLYTQRM 218 Query: 224 HEVQSNLTVSDHGYIG 239 +EVQ +TVS+HGYIG Sbjct: 219 NEVQKYVTVSNHGYIG 234