BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3352.p         (77 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776197.1| TRAP-type C4-dicarboxylate-binding periplasm...   131   4e-29
ref|YP_003774270.1| TRAP-type C4-dicarboxylate transport system ...    96   2e-18
ref|ZP_08274273.1| TRAP-type C4-dicarboxylate transport system, ...    91   4e-17
ref|YP_003448127.1| C4-dicarboxylate-binding periplasmic protein...    88   4e-16
ref|YP_420258.1| TRAP-type C4-dicarboxylate transport system [Ma...    85   5e-15

>ref|YP_003776197.1| TRAP-type C4-dicarboxylate-binding periplasmic protein
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ64289.1| TRAP-type C4-dicarboxylate-binding periplasmic protein
           [Herbaspirillum seropedicae SmR1]
          Length = 344

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 70/77 (90%), Positives = 75/77 (97%)

Query: 1   MKEATVYANTIAQKENDDALAAIKASGKTKVYTLSEDEKAEWRRALLPVHKSMASRVGQD 60
           MK+AT+YANTIAQKENDDALAAIKASGKT+VYTLSE EKAEWRRALLPVHKSMA+RVG D
Sbjct: 268 MKQATLYANTIAQKENDDALAAIKASGKTRVYTLSEQEKAEWRRALLPVHKSMAARVGAD 327

Query: 61  LIDAIYKESEAAGVKMN 77
           LI+AIYKESEAAGVKMN
Sbjct: 328 LIEAIYKESEAAGVKMN 344


>ref|YP_003774270.1| TRAP-type C4-dicarboxylate transport system periplasmic protein
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ62362.1| TRAP-type C4-dicarboxylate transport system, periplasmic component
           protein [Herbaspirillum seropedicae SmR1]
          Length = 334

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/75 (66%), Positives = 62/75 (82%)

Query: 1   MKEATVYANTIAQKENDDALAAIKASGKTKVYTLSEDEKAEWRRALLPVHKSMASRVGQD 60
           MK+AT YAN IAQ+END ALAA++ +GKT VY L++ EKAEWR+ALLPV + MASR+G+D
Sbjct: 260 MKDATKYANAIAQQENDAALAAVEKTGKTTVYRLTDAEKAEWRKALLPVQQQMASRIGKD 319

Query: 61  LIDAIYKESEAAGVK 75
           LIDA+ KES A G K
Sbjct: 320 LIDAVNKESAALGQK 334


>ref|ZP_08274273.1| TRAP-type C4-dicarboxylate transport system, periplasmic component
           [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF32246.1| TRAP-type C4-dicarboxylate transport system, periplasmic component
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 337

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/75 (61%), Positives = 59/75 (78%)

Query: 1   MKEATVYANTIAQKENDDALAAIKASGKTKVYTLSEDEKAEWRRALLPVHKSMASRVGQD 60
           MK+AT YAN IAQ+END A+ A++ SGKT+VY L++ EKAEWR+ALLPV K M SR+G+D
Sbjct: 263 MKDATKYANAIAQQENDKAMEAVRKSGKTEVYVLNDKEKAEWRKALLPVQKDMESRIGKD 322

Query: 61  LIDAIYKESEAAGVK 75
           LI A+ KE+   G K
Sbjct: 323 LITAVGKEATTLGYK 337


>ref|YP_003448127.1| C4-dicarboxylate-binding periplasmic protein [Azospirillum sp.
           B510]
 dbj|BAI71583.1| C4-dicarboxylate-binding periplasmic protein [Azospirillum sp.
           B510]
          Length = 340

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/76 (63%), Positives = 60/76 (78%)

Query: 1   MKEATVYANTIAQKENDDALAAIKASGKTKVYTLSEDEKAEWRRALLPVHKSMASRVGQD 60
           MKEAT YAN IAQ END ALA +KASGKT+ ++ +++E+  W +AL PVHK   +RVG+D
Sbjct: 265 MKEATDYANDIAQNENDVALAQMKASGKTEFHSQTKEEREAWIKALKPVHKDAEARVGKD 324

Query: 61  LIDAIYKESEAAGVKM 76
           LI+AIYKES AAG KM
Sbjct: 325 LIEAIYKESAAAGFKM 340


>ref|YP_420258.1| TRAP-type C4-dicarboxylate transport system [Magnetospirillum
           magneticum AMB-1]
 dbj|BAE49699.1| TRAP-type C4-dicarboxylate transport system [Magnetospirillum
           magneticum AMB-1]
          Length = 337

 Score = 84.7 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/75 (58%), Positives = 55/75 (73%)

Query: 1   MKEATVYANTIAQKENDDALAAIKASGKTKVYTLSEDEKAEWRRALLPVHKSMASRVGQD 60
           M EA+V+AN IAQ ENDDA+ A+KASGKT+ +  S  E   WR+ALLPVHK M  RVG+D
Sbjct: 262 MSEASVFANAIAQTENDDAVKAMKASGKTEFHDPSAAEIEAWRKALLPVHKDMEGRVGKD 321

Query: 61  LIDAIYKESEAAGVK 75
           LI++ YKE+   G K
Sbjct: 322 LIESFYKEAAKFGFK 336