BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3349.p (305 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776194.1| LysR family transcription regulator protein ... 426 e-117 ref|YP_003979072.1| LysR family transcriptional regulator [Achro... 378 e-103 gb|EFV87182.1| LysR family Transcriptional regulator [Achromobac... 376 e-102 ref|ZP_06687712.1| LysR family transcriptional regulator [Achrom... 374 e-101 gb|EGP43483.1| LysR family regulatory helix-turn-helix protein 8... 371 e-101 >ref|YP_003776194.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64286.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 263/303 (86%), Positives = 278/303 (91%) Query: 1 MRELSLDRLRTLVAIADLGSFAAAARELHLAPPTVSLHISELEERIGAPLLLRQRSQVRP 60 MRELSLDRLRTLVAIADLGSFAAAARELHLAPPTVSLHISELEERIGAPLLLRQR+QVRP Sbjct: 1 MRELSLDRLRTLVAIADLGSFAAAARELHLAPPTVSLHISELEERIGAPLLLRQRAQVRP 60 Query: 61 SGIGATLIARARQLLAAADQALEEVGRQVLGLAGRVRLGASTGAIATLLPQVLERLGQRH 120 SGIG TLIARARQLLAAADQALEEVGRQV GLAGRVRLGASTGAIA LLPQ LE+LG+ H Sbjct: 61 SGIGETLIARARQLLAAADQALEEVGRQVQGLAGRVRLGASTGAIAYLLPQALEQLGRSH 120 Query: 121 PDIDVQIHILTSQETLSQLNEGLLDIGLVALPQSPVSGLTVRPWRRDPVMAFLPAAWHAP 180 P IDVQ+ +LTSQETL++L G LDIGLVALPQ+PV+GLTV+PWRRDPVMAFLPA+W AP Sbjct: 121 PGIDVQVMVLTSQETLARLAAGALDIGLVALPQAPVAGLTVQPWRRDPVMAFLPASWRAP 180 Query: 181 RLVTPGWLAAQPLILNAPETRLSRLTSEWFAGAGEQPEARIQLNFNDAIKSLVAAGYGAT 240 R+VTP WLAAQPLILNAPETRLSRLT+EWFA GE P ARIQLNFNDAIKSLV AGYGAT Sbjct: 181 RVVTPAWLAAQPLILNAPETRLSRLTTEWFARGGEHPVARIQLNFNDAIKSLVGAGYGAT 240 Query: 241 LLPHEASAQGRPVPLDPRIVMRPLRPALWRPLGIAHRASQLEPATRHVLEALWELKQLKT 300 LLPHEASAQG V LDPRIVMRPLRPALWRPLGIAHR Q EPATRHVLEALW LKQL+ Sbjct: 241 LLPHEASAQGAAVALDPRIVMRPLRPALWRPLGIAHRTGQPEPATRHVLEALWALKQLRQ 300 Query: 301 PRS 303 PR+ Sbjct: 301 PRT 303 >ref|YP_003979072.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gb|ADP16357.1| bacterial regulatory helix-turn-helix protein, LysR family protein 89 [Achromobacter xylosoxidans A8] Length = 297 Score = 378 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 224/296 (75%), Positives = 251/296 (84%), Gaps = 4/296 (1%) Query: 1 MRELSLDRLRTLVAIADLGSFAAAARELHLAPPTVSLHISELEERIGAPLLLRQRSQVRP 60 MRE+SLDRLRTLVAIADLGSFA AAR LHLAPPT+SLH+++LE RIGAPLL R+R QVRP Sbjct: 1 MREISLDRLRTLVAIADLGSFADAARALHLAPPTISLHVADLEARIGAPLLTRKRGQVRP 60 Query: 61 SGIGATLIARARQLLAAADQALEEVGRQVLGLAGRVRLGASTGAIATLLPQVLERLGQRH 120 + IG TL+ RAR+LLA ADQAL++V RQV GLAGRVRLGASTGAIA LLPQ LE LG+ H Sbjct: 61 TSIGETLLERARRLLADADQALDDVQRQVQGLAGRVRLGASTGAIAHLLPQALETLGRNH 120 Query: 121 PDIDVQIHILTSQETLSQLNEGLLDIGLVALPQSPVSGLTVRPWRRDPVMAFLPAAWHAP 180 P IDVQ+ +LTSQETL +L +G LD+GLVALPQ P+ GL +RPWRRDPVMAFLPA+W AP Sbjct: 121 PGIDVQVAVLTSQETLLRLADGSLDVGLVALPQPPLEGLVLRPWRRDPVMAFLPASWQAP 180 Query: 181 RLVTPGWLAAQPLILNAPETRLSRLTSEWFAGAGEQPEARIQLNFNDAIKSLVAAGYGAT 240 +TP WLA +PLILN TRLSRLT EWFA AG P ARIQLN+NDAIKSLVAAGYGAT Sbjct: 181 ARLTPAWLAERPLILNDASTRLSRLTGEWFAAAGLNPRARIQLNYNDAIKSLVAAGYGAT 240 Query: 241 LLPHEASAQGRPVPLDPRIVMRPLRPALWRPLGIAHRASQLEPATRHVLEALWELK 296 LLPHEA+A P P DPRI MRPLRPALWRPLGIAHRA Q+E ATRHVL+ LWEL+ Sbjct: 241 LLPHEATA---PQP-DPRIEMRPLRPALWRPLGIAHRAGQVEQATRHVLDVLWELR 292 >gb|EFV87182.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 298 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 222/296 (75%), Positives = 247/296 (83%), Gaps = 4/296 (1%) Query: 1 MRELSLDRLRTLVAIADLGSFAAAARELHLAPPTVSLHISELEERIGAPLLLRQRSQVRP 60 MRE++LDRLRTLVAIADLGSFA AAR LHLAPPTVSLH+++LE RIGAPLL R R QVRP Sbjct: 1 MREINLDRLRTLVAIADLGSFAEAARALHLAPPTVSLHVADLEARIGAPLLTRTRGQVRP 60 Query: 61 SGIGATLIARARQLLAAADQALEEVGRQVLGLAGRVRLGASTGAIATLLPQVLERLGQRH 120 + IG TL+ RAR+LLA ADQAL++V RQV GL GRVRLGASTGAIA LLP+ LE LG+ H Sbjct: 61 TPIGDTLLERARRLLADADQALDDVQRQVQGLGGRVRLGASTGAIAHLLPRALETLGREH 120 Query: 121 PDIDVQIHILTSQETLSQLNEGLLDIGLVALPQSPVSGLTVRPWRRDPVMAFLPAAWHAP 180 P IDVQ+ +LTSQETL QL +G LD+GLVALPQ PV GL +RPWRRDP+MAFLPAAW AP Sbjct: 121 PGIDVQVAVLTSQETLQQLRDGTLDVGLVALPQPPVPGLVLRPWRRDPIMAFLPAAWDAP 180 Query: 181 RLVTPGWLAAQPLILNAPETRLSRLTSEWFAGAGEQPEARIQLNFNDAIKSLVAAGYGAT 240 VTP WL +PLILN TRLSR T EWFAGAG P RIQLN+NDAIKSLVAAGYGAT Sbjct: 181 ARVTPAWLGERPLILNDASTRLSRQTGEWFAGAGLNPRPRIQLNYNDAIKSLVAAGYGAT 240 Query: 241 LLPHEASAQGRPVPLDPRIVMRPLRPALWRPLGIAHRASQLEPATRHVLEALWELK 296 LLPHEA+A P P DPRIVMRPLRPALWRPLGIAHR Q+E AT+HVL+ALW L+ Sbjct: 241 LLPHEATA---PQP-DPRIVMRPLRPALWRPLGIAHRDGQVERATQHVLDALWLLR 292 >ref|ZP_06687712.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gb|EFF75362.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 297 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 216/299 (72%), Positives = 250/299 (83%), Gaps = 4/299 (1%) Query: 1 MRELSLDRLRTLVAIADLGSFAAAARELHLAPPTVSLHISELEERIGAPLLLRQRSQVRP 60 MRE+SLDRLRTLVAIADLGSFA AAR LHLAPPTVSLH+++LE RIGAPLL R+R QVRP Sbjct: 1 MREISLDRLRTLVAIADLGSFADAARALHLAPPTVSLHVADLEARIGAPLLTRKRGQVRP 60 Query: 61 SGIGATLIARARQLLAAADQALEEVGRQVLGLAGRVRLGASTGAIATLLPQVLERLGQRH 120 + IG TL+ RAR+LLA ADQAL++V RQV GL+GRVRLGASTGAIA LLPQ LE LG+ H Sbjct: 61 TTIGETLLERARRLLAEADQALDDVQRQVQGLSGRVRLGASTGAIAHLLPQALETLGRHH 120 Query: 121 PDIDVQIHILTSQETLSQLNEGLLDIGLVALPQSPVSGLTVRPWRRDPVMAFLPAAWHAP 180 P IDVQ+ +LTSQETL +LNEG LD+GLVALPQ P+ GL ++PWRRDPVMAF+PA+W AP Sbjct: 121 PGIDVQVAVLTSQETLQRLNEGTLDVGLVALPQPPIDGLLIKPWRRDPVMAFMPASWDAP 180 Query: 181 RLVTPGWLAAQPLILNAPETRLSRLTSEWFAGAGEQPEARIQLNFNDAIKSLVAAGYGAT 240 VTP WLA +PLILN TRLSR T+EWFA AG P ARIQLN+NDAIKSLVAAGYGAT Sbjct: 181 ARVTPAWLATRPLILNDTTTRLSRQTAEWFAAAGLNPRARIQLNYNDAIKSLVAAGYGAT 240 Query: 241 LLPHEASAQGRPVPLDPRIVMRPLRPALWRPLGIAHRASQLEPATRHVLEALWELKQLK 299 LLPHEA+A D RI+MR LRPALWRPLGIAHRA ++E +T+HVL+ LW+L+ + Sbjct: 241 LLPHEATAP----QADARIIMRALRPALWRPLGIAHRAEKVERSTQHVLDVLWQLRATR 295 >gb|EGP43483.1| LysR family regulatory helix-turn-helix protein 89 [Achromobacter xylosoxidans AXX-A] Length = 298 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 219/296 (73%), Positives = 247/296 (83%), Gaps = 4/296 (1%) Query: 1 MRELSLDRLRTLVAIADLGSFAAAARELHLAPPTVSLHISELEERIGAPLLLRQRSQVRP 60 MRE++LDRLRTLVAIADLGSFA AAR LHLAPPTVSLH+++LE R+GAPLL R+R QVRP Sbjct: 1 MREINLDRLRTLVAIADLGSFADAARALHLAPPTVSLHVADLEARVGAPLLTRKRGQVRP 60 Query: 61 SGIGATLIARARQLLAAADQALEEVGRQVLGLAGRVRLGASTGAIATLLPQVLERLGQRH 120 + IG TL+ RAR+LLA ADQAL++V RQV GLAGRVRLGASTGAIA LLPQ LE LG+ H Sbjct: 61 TPIGDTLLERARRLLAEADQALDDVQRQVQGLAGRVRLGASTGAIAHLLPQALEALGREH 120 Query: 121 PDIDVQIHILTSQETLSQLNEGLLDIGLVALPQSPVSGLTVRPWRRDPVMAFLPAAWHAP 180 P IDVQ+ +LTSQETL QL +G LD+GLVALPQ PV GL +RPWRRDP+MAFLPAAW+ P Sbjct: 121 PGIDVQVAVLTSQETLQQLGDGALDVGLVALPQPPVPGLVLRPWRRDPIMAFLPAAWNPP 180 Query: 181 RLVTPGWLAAQPLILNAPETRLSRLTSEWFAGAGEQPEARIQLNFNDAIKSLVAAGYGAT 240 VTP WL +PLILN TRLSR T EWFA AG QP RIQLN+NDAIKSLVAAGYGAT Sbjct: 181 ARVTPAWLGERPLILNDASTRLSRQTGEWFAAAGLQPRPRIQLNYNDAIKSLVAAGYGAT 240 Query: 241 LLPHEASAQGRPVPLDPRIVMRPLRPALWRPLGIAHRASQLEPATRHVLEALWELK 296 LLPHEA+A DPRI MRPLRPALWRPLGIAHR Q+E AT+HVL+ALW+L+ Sbjct: 241 LLPHEATAP----QADPRIAMRPLRPALWRPLGIAHRDGQVERATQHVLDALWQLR 292