BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3347.p (338 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_06687186.1| GntR family transcriptional regulator [Achrom... 412 e-113 ref|YP_003978434.1| GntR family transcriptional regulator [Achro... 408 e-112 gb|EGP44470.1| GntR family regulatory protein 21 [Achromobacter ... 404 e-111 gb|EFV87117.1| transcriptional regulator [Achromobacter xylosoxi... 404 e-110 ref|YP_004489282.1| GntR family transcriptional regulator with a... 392 e-107 >ref|ZP_06687186.1| GntR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gb|EFF75903.1| GntR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 349 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 215/332 (64%), Positives = 264/332 (79%), Gaps = 3/332 (0%) Query: 3 LAYGDPLGEPALREAIAQYLRVARGVRCEAGQVVVTEGSQGALSLCVRLFANPGERAWLE 62 L YG P+GEPALREAIAQYLRV+RGV C+A ++V+TEG+QGAL+LCV+L NPG+ AWLE Sbjct: 19 LGYGHPIGEPALREAIAQYLRVSRGVHCDASRIVITEGAQGALALCVQLLTNPGDTAWLE 78 Query: 63 DPGYGGVRAAFHAGDMKIRSMPVDEEGILIAERAWRS-PPRLIHVTPSHQYPTGAVLSLA 121 +PGY G ++AFH GD+ + +M VD +GI+I E AWR+ PPRLI TP+HQYPTGAVLS+A Sbjct: 79 EPGYRGAKSAFHGGDLNVVAMRVDADGIVIPEEAWRTHPPRLIQTTPTHQYPTGAVLSVA 138 Query: 122 RRLALIARAREHGCWIIEDDYDSDFRHHGHPIPAMQGLVPDAPVLYVGTFSKTLFPGLRI 181 RRL L+ RAR G WIIEDDYDS+FRH G PI AMQGL+PDAPVLYVGTFSKTLFP LR+ Sbjct: 139 RRLDLLERARRAGAWIIEDDYDSEFRHQGDPIAAMQGLLPDAPVLYVGTFSKTLFPALRL 198 Query: 182 GFLVLPSSVGEGAGRALSELLRGGHRLEQLALAEFMAGGQFARHLGRMKRLYRERQQALR 241 GFLVLP ++ + A ++ E+LRGGHRLEQL LA F+ GQF+RHLGRM+RLYRERQ ALR Sbjct: 199 GFLVLPDALAQSALPSVVEMLRGGHRLEQLTLAAFIDNGQFSRHLGRMRRLYRERQAALR 258 Query: 242 AALQAQLP-EFGISGGDSGLHLTLRLPPDCPDTAVSTAARAAGMNVGALSSFSAGPAQAG 300 AL A L + + GG SGLHLT+RLPP+ PD A+ AR GMN ALS+F+ P +A Sbjct: 259 DALAAHLRVDHEVLGGHSGLHLTVRLPPEFPDQAIVALARQVGMNPSALSTFAMAP-RAE 317 Query: 301 NNGLVIGYGNTSHEQYAALIRRLAGIVRRVRR 332 +NGLVIGYGNTS +++ AL+ RL + +VRR Sbjct: 318 DNGLVIGYGNTSADRFPALVSRLGELAGQVRR 349 >ref|YP_003978434.1| GntR family transcriptional regulator [Achromobacter xylosoxidans A8] gb|ADP15719.1| bacterial regulatory protein, GntR family protein 21 [Achromobacter xylosoxidans A8] Length = 503 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 217/333 (65%), Positives = 260/333 (78%), Gaps = 3/333 (0%) Query: 2 ALAYGDPLGEPALREAIAQYLRVARGVRCEAGQVVVTEGSQGALSLCVRLFANPGERAWL 61 AL YG P+GEPALREAIAQYLRV+RGVRC+A ++V+TEG+QGAL+LCV+L NPG+ AWL Sbjct: 170 ALGYGHPVGEPALREAIAQYLRVSRGVRCDASRIVITEGAQGALALCVQLLTNPGDTAWL 229 Query: 62 EDPGYGGVRAAFHAGDMKIRSMPVDEEGILIAERAWRS-PPRLIHVTPSHQYPTGAVLSL 120 EDPGY G ++AFH GD+ + +M VD +GI+I E AW+ PPRLI TPSHQYPTGAVLSL Sbjct: 230 EDPGYRGAKSAFHGGDLDVVAMRVDADGIVIPESAWQERPPRLIQTTPSHQYPTGAVLSL 289 Query: 121 ARRLALIARAREHGCWIIEDDYDSDFRHHGHPIPAMQGLVPDAPVLYVGTFSKTLFPGLR 180 RRL LI RAR+ G WIIEDDYDS+FRH G PI AMQGLV DAPVLYVGTFSKT+FP LR Sbjct: 290 PRRLGLIERARQAGAWIIEDDYDSEFRHQGEPIAAMQGLVEDAPVLYVGTFSKTMFPALR 349 Query: 181 IGFLVLPSSVGEGAGRALSELLRGGHRLEQLALAEFMAGGQFARHLGRMKRLYRERQQAL 240 +GF+VLP ++ A ++ E+LRGGHRLEQL +A FM GQF+RHLGRM+RLYRERQ AL Sbjct: 350 LGFVVLPEAIAAQAMPSIIEMLRGGHRLEQLTMAAFMENGQFSRHLGRMRRLYRERQGAL 409 Query: 241 RAALQAQLP-EFGISGGDSGLHLTLRLPPDCPDTAVSTAARAAGMNVGALSSFSAGPAQA 299 R AL A L E + GG SGLHLT+RLP PD + AR GMN GALSSF+ A+A Sbjct: 410 REALAAHLGIEHEVLGGHSGLHLTVRLPAAYPDREIVEEARKIGMNPGALSSFAVA-ARA 468 Query: 300 GNNGLVIGYGNTSHEQYAALIRRLAGIVRRVRR 332 +NGLVIGYGNT E++ AL++RL +V R+ Sbjct: 469 EDNGLVIGYGNTGAERFPALVQRLRKVVLAARQ 501 >gb|EGP44470.1| GntR family regulatory protein 21 [Achromobacter xylosoxidans AXX-A] Length = 512 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 212/332 (63%), Positives = 262/332 (78%), Gaps = 3/332 (0%) Query: 3 LAYGDPLGEPALREAIAQYLRVARGVRCEAGQVVVTEGSQGALSLCVRLFANPGERAWLE 62 L YG P+GEPALREAIAQYLRV+RGVRC+A ++V+TEG+QGAL+LCV+L NPG+ AWLE Sbjct: 182 LGYGPPVGEPALREAIAQYLRVSRGVRCDASRIVITEGAQGALALCVQLLTNPGDTAWLE 241 Query: 63 DPGYGGVRAAFHAGDMKIRSMPVDEEGILIAERAWRS-PPRLIHVTPSHQYPTGAVLSLA 121 +PGY G ++AFHAGD+ + +M VD +G+ I + WR+ PPRLI TP+HQYPTGAVLSLA Sbjct: 242 EPGYRGAKSAFHAGDLNVVAMRVDADGVAITDDDWRTRPPRLIQTTPTHQYPTGAVLSLA 301 Query: 122 RRLALIARAREHGCWIIEDDYDSDFRHHGHPIPAMQGLVPDAPVLYVGTFSKTLFPGLRI 181 RRL L+ RAR G WIIEDDYDS+FRH G PI AMQGL+PDAPVLYVGTFSKT+FP LR+ Sbjct: 302 RRLDLLERARHAGAWIIEDDYDSEFRHQGEPIAAMQGLLPDAPVLYVGTFSKTMFPALRL 361 Query: 182 GFLVLPSSVGEGAGRALSELLRGGHRLEQLALAEFMAGGQFARHLGRMKRLYRERQQALR 241 GFLVLP ++ E A +++E+LRGGHRLEQL +A F+ GQF+RHLGRM+RLYR+RQ ALR Sbjct: 362 GFLVLPQAIAEPAMPSITEMLRGGHRLEQLTMAAFIDNGQFSRHLGRMRRLYRDRQAALR 421 Query: 242 AALQAQLP-EFGISGGDSGLHLTLRLPPDCPDTAVSTAARAAGMNVGALSSFSAGPAQAG 300 AL L + + GG SGLHLT+RLPPD PD A+ AR GMN ALS+F+ P Q Sbjct: 422 EALARHLGVDHEVLGGHSGLHLTVRLPPDIPDRAIVEQARQLGMNPNALSTFAITP-QPQ 480 Query: 301 NNGLVIGYGNTSHEQYAALIRRLAGIVRRVRR 332 +NGLVIGYGNTS +++ AL+R+L + RR Sbjct: 481 DNGLVIGYGNTSADRFPALVRQLGRLATTPRR 512 >gb|EFV87117.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 356 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 212/331 (64%), Positives = 259/331 (78%), Gaps = 3/331 (0%) Query: 3 LAYGDPLGEPALREAIAQYLRVARGVRCEAGQVVVTEGSQGALSLCVRLFANPGERAWLE 62 L YG P+GEPALREAIAQYLRV+RGV C+A ++V+TEG+QGAL+LCV+L NPG+ AWLE Sbjct: 26 LGYGPPVGEPALREAIAQYLRVSRGVNCDASRIVITEGAQGALALCVQLLTNPGDTAWLE 85 Query: 63 DPGYGGVRAAFHAGDMKIRSMPVDEEGILIAERAWRS-PPRLIHVTPSHQYPTGAVLSLA 121 +PGY G ++AFHAGD+ + +M VD +G+ I+E W + PPRLI TP+HQYPTGAVLSLA Sbjct: 86 EPGYRGAKSAFHAGDLNVVAMRVDADGLAISEDDWLTRPPRLIQATPTHQYPTGAVLSLA 145 Query: 122 RRLALIARAREHGCWIIEDDYDSDFRHHGHPIPAMQGLVPDAPVLYVGTFSKTLFPGLRI 181 RRL L+ RAR G WIIEDDYDS+FRH G PI AMQGL+PDAPVLYVGTFSKT+FP LR+ Sbjct: 146 RRLDLLERARRAGAWIIEDDYDSEFRHQGEPIAAMQGLLPDAPVLYVGTFSKTMFPALRL 205 Query: 182 GFLVLPSSVGEGAGRALSELLRGGHRLEQLALAEFMAGGQFARHLGRMKRLYRERQQALR 241 GFLVLP ++ A ++ E+LRGGHRLEQL +A F+ GQF+RHLGRM+RLYRERQ ALR Sbjct: 206 GFLVLPQAIAGPAMPSIVEMLRGGHRLEQLTMAAFIENGQFSRHLGRMRRLYRERQAALR 265 Query: 242 AALQAQLP-EFGISGGDSGLHLTLRLPPDCPDTAVSTAARAAGMNVGALSSFSAGPAQAG 300 AL L + + GG SGLHLT+RLPPD PD AV AR GMN ALS+F+ P Q Sbjct: 266 EALAQHLGIDHEVLGGHSGLHLTVRLPPDVPDRAVVEQARRLGMNPNALSTFAITP-QPQ 324 Query: 301 NNGLVIGYGNTSHEQYAALIRRLAGIVRRVR 331 +NGLVIGYGNTS ++Y AL+R+L + +R Sbjct: 325 DNGLVIGYGNTSADRYPALVRQLGKLAAALR 355 >ref|YP_004489282.1| GntR family transcriptional regulator with aminotransferase domain [Delftia sp. Cs1-4] gb|AEF90927.1| transcriptional regulator, GntR family with aminotransferase domain [Delftia sp. Cs1-4] Length = 487 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 210/324 (64%), Positives = 252/324 (77%), Gaps = 3/324 (0%) Query: 3 LAYGDPLGEPALREAIAQYLRVARGVRCEAGQVVVTEGSQGALSLCVRLFANPGERAWLE 62 L YGDP GEPALR+AIAQ+LR++RGVRC+A +++VTEG+QGAL LCV+L NPG+ AWLE Sbjct: 156 LDYGDPAGEPALRQAIAQHLRISRGVRCDASRIIVTEGAQGALDLCVQLLTNPGDHAWLE 215 Query: 63 DPGYGGVRAAFHAGDMKIRSMPVDEEGILIAERAWRS-PPRLIHVTPSHQYPTGAVLSLA 121 +PGY G ++AF GD+ + ++ VD +G IA W S PPRLI +TPSHQYPTGAVLS+A Sbjct: 216 EPGYRGAKSAFAGGDLCVSTLRVDADGAAIAPGLWDSHPPRLIQITPSHQYPTGAVLSVA 275 Query: 122 RRLALIARAREHGCWIIEDDYDSDFRHHGHPIPAMQGLVPDAPVLYVGTFSKTLFPGLRI 181 RRL L+ RAR G WIIEDDYDS+FRH G PI AMQG VPDAPVLYVGTFSKT+FP LR+ Sbjct: 276 RRLDLLERARRAGAWIIEDDYDSEFRHQGTPIAAMQGQVPDAPVLYVGTFSKTMFPALRM 335 Query: 182 GFLVLPSSVGEGAGRALSELLRGGHRLEQLALAEFMAGGQFARHLGRMKRLYRERQQALR 241 GF+VLP ++ A A+ E+LRGGHRLEQLA+A+FM GQF+RHLGRM+RLYRERQ ALR Sbjct: 336 GFVVLPQALATSAASAVQEMLRGGHRLEQLAMADFMESGQFSRHLGRMRRLYRERQAALR 395 Query: 242 AALQAQLP-EFGISGGDSGLHLTLRLPPDCPDTAVSTAARAAGMNVGALSSFSAGPAQAG 300 AL QL E + GG GLHLT+RLPPD D A+ AR AGMN GALSSF+ P Sbjct: 396 EALATQLGVEHEVLGGHGGLHLTVRLPPDLSDRAIVEQARRAGMNPGALSSFALTPLPQ- 454 Query: 301 NNGLVIGYGNTSHEQYAALIRRLA 324 +NGLVIGYGNT ++ AL+RRL Sbjct: 455 DNGLVIGYGNTDAARFGALVRRLG 478