BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3346.p         (144 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776193.1| hypothetical protein Hsero_2790 [Herbaspiril...   207   5e-52
ref|YP_003776129.1| sensory transduction regulatory protein [Her...    78   5e-13
ref|YP_003776604.1| sensory transduction regulatory protein [Her...    68   5e-10
ref|YP_003777359.1| response regulator transcription regulator p...    61   6e-08

>ref|YP_003776193.1| hypothetical protein Hsero_2790 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64285.1| hypothetical protein Hsero_2790 [Herbaspirillum seropedicae SmR1]
          Length = 144

 Score =  207 bits (527), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 103/141 (73%), Positives = 122/141 (86%)

Query: 1   MSLTLHLPSVLVVDADLDAIETARFAVWRSQLPCQFEWFDDAELANASLLTKALCRSKEL 60
           M  +  LP +L++DADLDAIETARFA+WRS L C+ EWFDDAELANASLLT+ALC+ ++ 
Sbjct: 1   MVQSQQLPRILIIDADLDAIETARFALWRSHLSCRIEWFDDAELANASLLTQALCQLRDQ 60

Query: 61  PALILLDPRSFTGTEGYELLRTLCIYQQLAHIPLVLFTAAPMSADFALVEDSRIWYAAKP 120
           P LILLDPR+F GTEGYELLRTLC+Y QLA IPLVLFTA+P+S+DFA  +D+RIWYAAKP
Sbjct: 61  PTLILLDPRNFRGTEGYELLRTLCVYPQLAQIPLVLFTASPISSDFAAEQDNRIWYAAKP 120

Query: 121 VRAADYMDLVTRCVKQRLHQP 141
            R ADYM+LVTRCV+QRL QP
Sbjct: 121 ARPADYMELVTRCVQQRLKQP 141


>ref|YP_003776129.1| sensory transduction regulatory protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ64221.1| sensory transduction regulatory protein [Herbaspirillum seropedicae
           SmR1]
          Length = 140

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 51/133 (38%), Positives = 75/133 (56%), Gaps = 3/133 (2%)

Query: 8   PSVLVVDADLDAIETARFAVWRSQLPCQFEWFDDAELANASLLT-KALCRSKELPALILL 66
           PS+L+VD   +++E ARF +WR++L C F WF+DAE A  SL   +A     +LP LILL
Sbjct: 4   PSILMVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADLPCLILL 63

Query: 67  DPRSFTGTEGYELLRTLCIYQQLAHIPLVLF-TAAPMSADFALVEDSRIWYAAKPVRAAD 125
           +PR     EG ELL  L  +     +P+V+F T+   +            Y  KPV A  
Sbjct: 64  EPR-LPRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDARA 122

Query: 126 YMDLVTRCVKQRL 138
           +M+LV++ V++ L
Sbjct: 123 FMELVSQTVRRWL 135


>ref|YP_003776604.1| sensory transduction regulatory protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ64696.1| sensory transduction regulatory protein [Herbaspirillum seropedicae
           SmR1]
          Length = 154

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 2/129 (1%)

Query: 8   PSVLVVDADLDAIETARFAVWRSQLPCQFEWFDDAELANASLLTKALCRSKELPALILLD 67
           P +L+++++ +A+E ARFA+WRS   C  +W+D+A+ A   LL +       LP LILLD
Sbjct: 4   PIILMIESNGEAVELARFALWRSNFHCVLQWYDEADAAIDGLLHRHRLDDARLPDLILLD 63

Query: 68  PRSFTGTEGYELLRTLCIYQQLAHIPLVLFTAAPMSADFA-LVEDSRIWYAAKPVRAADY 126
           P       G + +  +   +    IP+V+F  +    +   L+E     Y  KP  A  Y
Sbjct: 64  P-GMMENNGVDFILAMKAGRDTRSIPVVVFPDSDYPPEMPDLLEAGASAYLLKPETAPQY 122

Query: 127 MDLVTRCVK 135
           M  V  C +
Sbjct: 123 MQAVVECAQ 131


>ref|YP_003777359.1| response regulator transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ65451.1| response regulator transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 188

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 1/132 (0%)

Query: 5   LHLPSVLVVDADLDAIETARFAVWRSQLPCQFEWFDDAELANASLLTKALCRSKELPALI 64
           +  PS++++D   +A E ARFA+WR+ L C F    D   A   LL+         P+LI
Sbjct: 13  MSFPSIIMIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGRRSGDCATPSLI 72

Query: 65  LLDPRSFTGTEGYELLRTLCIYQQLAHIPLVLFTAAPMSADFALVEDSRIWYAAKPVRAA 124
           LL+     G +G ELLR L     LA  P+V+F +     +   ++     Y  KP+   
Sbjct: 73  LLESDMECG-DGLELLRELRASSHLAEAPVVVFPSHDTEGEREALDAGATAYLPKPIDGE 131

Query: 125 DYMDLVTRCVKQ 136
            Y   V   V++
Sbjct: 132 RYARCVVEMVER 143