BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3345.p         (171 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776192.1| hypothetical protein Hsero_2789 [Herbaspiril...   281   2e-74
ref|YP_001861684.1| hypothetical protein Bphy_5563 [Burkholderia...    70   1e-10
ref|YP_002909011.1| hypothetical protein bglu_2g14170 [Burkholde...    69   4e-10
ref|ZP_03264306.1| hypothetical protein BH160DRAFT_0582 [Burkhol...    67   1e-09
ref|YP_001888991.1| hypothetical protein Bphyt_5262 [Burkholderi...    67   1e-09

>ref|YP_003776192.1| hypothetical protein Hsero_2789 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64284.1| hypothetical protein Hsero_2789 [Herbaspirillum seropedicae SmR1]
          Length = 174

 Score =  281 bits (720), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 150/171 (87%), Positives = 160/171 (93%)

Query: 1   MDTTRPHSKTIMSLIRLKNAKSWRPQGFRPLYVSTFGFVAAFGLRYALAPFVEESLSMLF 60
           M TTR HS+ IM+LIRLKNA+SWRPQGFRPLYVS FGF+AAFGLRYALAPFVEESLSMLF
Sbjct: 3   MHTTRHHSRAIMTLIRLKNARSWRPQGFRPLYVSAFGFIAAFGLRYALAPFVEESLSMLF 62

Query: 61  FAVNCIVMSYLFGYLYSLGLLAISIPTAMFFFRKPYYTMDGLNDKDIFLILVYTVIVATA 120
           FAVNCIVMSYLFG  Y+LGLLA+SIPTAMFFFRKP+YTMDGLNDKD+FLILVYTVIVATA
Sbjct: 63  FAVNCIVMSYLFGCFYALGLLAVSIPTAMFFFRKPFYTMDGLNDKDLFLILVYTVIVATA 122

Query: 121 SIIIEWLQRERYAAVLQQRVSETRYRLLIESDQARRAEYARQFESSARESA 171
           S IIEWLQRERYAAVLQQRVSETRYRLLIESDQARRAEYA+QFE+S    A
Sbjct: 123 SFIIEWLQRERYAAVLQQRVSETRYRLLIESDQARRAEYAKQFEASNPSEA 173


>ref|YP_001861684.1| hypothetical protein Bphy_5563 [Burkholderia phymatum STM815]
 gb|ACC74638.1| hypothetical protein Bphy_5563 [Burkholderia phymatum STM815]
          Length = 280

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 4/147 (2%)

Query: 15  IRLKNAKSWRPQGFRPLYVSTFGFVAAFGLRYALAPFVEESLSMLFFAVNCIVMSYLFGY 74
           ++++NA+ W P+G R    +      A G+R  L P +   +    FA+  +++ Y FG 
Sbjct: 1   MQVQNARRWAPRGSRRWIAAIAALFMASGVRLLLHPLLGPVMPGTAFAIAAVLIEYYFGL 60

Query: 75  LYSLGLLAISIPTAMFFFRKPYYTMDGLNDKDIFLILVYTVIVATASIIIEWLQRERYAA 134
             +L ++   +  A + F  PY  +  +N  D+  ++ Y ++      +IE L+R ++ A
Sbjct: 61  APALTVMLAGLCIADYLFVPPYAVVSVINRSDVLFVVSYPLVALVVITLIERLRRAQFRA 120

Query: 135 VLQQRVSETRYRLLIESDQ----ARRA 157
            L   V+++RY +L+  D     ARRA
Sbjct: 121 ELVSSVAQSRYEMLLRHDNDRMLARRA 147


>ref|YP_002909011.1| hypothetical protein bglu_2g14170 [Burkholderia glumae BGR1]
 gb|ACR31776.1| Hypothetical protein bglu_2g14170 [Burkholderia glumae BGR1]
          Length = 263

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 7/150 (4%)

Query: 15  IRLKNAKSWRPQGFRPLYVSTFGFVAAFGLRYALAPFVEESLSMLFFAVNCIVMSYLFGY 74
           ++++NA  W P G R    +    V A  +R AL P +   +    FA+  +++ Y  G 
Sbjct: 1   MKVRNASLWAPAGMRRWVYAAGALVLAIAVRLALHPLLGPVMPGTAFAIMAVLVEYYLGL 60

Query: 75  LYSLGLLAISIPTAMFFFRKPYYTMD---GLNDKDIFLILVYTVIVATASIIIEWLQRER 131
             +L ++  ++P A F F  PY ++D     +  DI L++ Y ++      ++E L+R +
Sbjct: 61  APALVVMFSALPIADFLFVPPYASLDEFLTFDRGDIVLLVSYPLVTLLVISLVERLRRAQ 120

Query: 132 YAAVLQQRVSETRYRLLIESDQ----ARRA 157
           + A L   V+++RY +L+  D     ARRA
Sbjct: 121 FRARLITSVAQSRYEMLLRQDNDRLLARRA 150


>ref|ZP_03264306.1| hypothetical protein BH160DRAFT_0582 [Burkholderia sp. H160]
 gb|EEA04150.1| hypothetical protein BH160DRAFT_0582 [Burkholderia sp. H160]
          Length = 259

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 72/141 (51%)

Query: 15  IRLKNAKSWRPQGFRPLYVSTFGFVAAFGLRYALAPFVEESLSMLFFAVNCIVMSYLFGY 74
           ++++NA++W P+G R   ++      A  +R+AL P +   L    F +   ++ Y  G 
Sbjct: 1   MKVRNARNWGPRGARRWCLAAGALAVASTIRFALHPVLGPMLPGTTFFIAASLVEYYLGL 60

Query: 75  LYSLGLLAISIPTAMFFFRKPYYTMDGLNDKDIFLILVYTVIVATASIIIEWLQRERYAA 134
             +L ++ +    A + F  PY  +  L+  D+ L++ + ++      +IE L+RE+  A
Sbjct: 61  APALTVMVLGSCIADYMFVPPYNDISFLDQSDVVLLVAHPLVTLIVITLIERLRREQARA 120

Query: 135 VLQQRVSETRYRLLIESDQAR 155
            L   V+++RY +L+  D  R
Sbjct: 121 KLIASVAQSRYEMLLRQDNER 141


>ref|YP_001888991.1| hypothetical protein Bphyt_5262 [Burkholderia phytofirmans PsJN]
 gb|ACD19621.1| hypothetical protein Bphyt_5262 [Burkholderia phytofirmans PsJN]
          Length = 256

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 71/141 (50%)

Query: 15  IRLKNAKSWRPQGFRPLYVSTFGFVAAFGLRYALAPFVEESLSMLFFAVNCIVMSYLFGY 74
           + ++NA+ W P+G R    +      A G+R  L PF+   L    F +   ++ Y FG 
Sbjct: 1   MEVQNARRWAPRGTRAWLAAAAALAIASGVRLLLHPFIGPFLPGSAFCIAASLVEYFFGL 60

Query: 75  LYSLGLLAISIPTAMFFFRKPYYTMDGLNDKDIFLILVYTVIVATASIIIEWLQRERYAA 134
             +L ++ + +  A + F  PY  +   +  D+ L++ Y ++     ++IE L+R ++ A
Sbjct: 61  APALTVMLLGLCIADYLFVPPYADITVFDRADLALVISYPLVTLLVIVLIERLRRSQFRA 120

Query: 135 VLQQRVSETRYRLLIESDQAR 155
            L   V+++RY +L+  D  R
Sbjct: 121 ELIASVAQSRYEMLLRHDNER 141