BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3343.p (217 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776190.1| transmembrane protein [Herbaspirillum serope... 192 3e-47 ref|YP_004753770.1| hypothetical protein CFU_3122 [Collimonas fu... 141 8e-32 ref|YP_001100489.1| putative signal peptide [Herminiimonas arsen... 111 8e-23 ref|ZP_08276001.1| putative outer membrane lipoprotein [Oxalobac... 100 2e-19 ref|YP_001352949.1| hypothetical protein mma_1259 [Janthinobacte... 88 8e-16 >ref|YP_003776190.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64282.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 203 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 158/209 (75%), Positives = 175/209 (83%), Gaps = 6/209 (2%) Query: 9 LSSNTAVAKPSSGRLHPLVAGASVAVILVSLIGVAAMTGLLPSSKSANSPQQVAAMEQAG 68 + +N A+ K S RLHPLVAGA+VAVILVSLIGVAAMTGLLPSSKSANSPQQ+AA+EQ Sbjct: 1 METNNAIVKSQSSRLHPLVAGAAVAVILVSLIGVAAMTGLLPSSKSANSPQQLAAVEQ-- 58 Query: 69 QGQQPLVQQQAPQSTSYQPQQGAYQAQAAAPVAQRAAAVCSSCGEVIGVRTVRHSVPTSG 128 P+ QQAP +T PQQ AY +Q+A A RAAAVCSSCGEV+ VR V+H+ TSG Sbjct: 59 -NAGPMNPQQAP-ATRLAPQQAAYPSQSAE--APRAAAVCSSCGEVVAVRAVQHTPQTSG 114 Query: 129 VGIAGGAVVGGLLGNQIGGGTGRTLATIAGAVGGGYAGNEVEKNVRSTTSYVVDVRMDNG 188 VGIAGGAVVGGLLGNQIGGG GRTLATIAGAVGGGYAGN VEKNVR+TT+YVVDVRMDNG Sbjct: 115 VGIAGGAVVGGLLGNQIGGGNGRTLATIAGAVGGGYAGNMVEKNVRTTTTYVVDVRMDNG 174 Query: 189 KTRSFPQTSENWRVGDQVRVVNGRLEGRG 217 K+RSFPQ+ NWRVGDQVRVVNG LE RG Sbjct: 175 KSRSFPQSGANWRVGDQVRVVNGHLESRG 203 >ref|YP_004753770.1| hypothetical protein CFU_3122 [Collimonas fungivorans Ter331] gb|AEK62947.1| conserved hypothetical protein; putative signal peptide [Collimonas fungivorans Ter331] Length = 242 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 116/223 (52%), Positives = 147/223 (65%), Gaps = 27/223 (12%) Query: 20 SGRLHPLVAGASVAVILVSLIGVAAMTGLLPSSKSANSPQQVAAMEQAG---QGQQPLVQ 76 + R+HPLVA A+VAV L SL+GVAAMTGL PSS S +P VAAM A QQP Q Sbjct: 22 NNRIHPLVAAAAVAVTLASLVGVAAMTGLFPSSNS--TPAPVAAMSAAPGDYNSQQPGAQ 79 Query: 77 QQAPQSTSYQ-------------------PQQGAYQA---QAAAPVAQRAAAVCSSCGEV 114 QQA + + Q P+ QA Q APV+ + A+C SCG V Sbjct: 80 QQANGAPAGQNGYYQQQPAQAQQQQPRSAPRPEYAQAPRQQEPAPVSAPSPAICHSCGRV 139 Query: 115 IGVRTVRHSVPTSGVGIAGGAVVGGLLGNQIGGGTGRTLATIAGAVGGGYAGNEVEKNVR 174 ++ ++H+ P SG+GIA GAV+GG+LG+Q+G G G TLAT+AGAVGGG+AGNEVEK R Sbjct: 140 ESIQAIQHAAPPSGLGIAAGAVLGGVLGHQVGHGNGNTLATVAGAVGGGFAGNEVEKRTR 199 Query: 175 STTSYVVDVRMDNGKTRSFPQTSENWRVGDQVRVVNGRLEGRG 217 + T+Y V VRM++GK R+FPQ+ + WRVGD V+VVNG LEGRG Sbjct: 200 TNTTYQVVVRMEDGKARTFPQSGQGWRVGDPVQVVNGHLEGRG 242 >ref|YP_001100489.1| putative signal peptide [Herminiimonas arsenicoxydans] emb|CAL62366.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 226 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 103/223 (46%), Positives = 143/223 (64%), Gaps = 23/223 (10%) Query: 17 KPSSGRLHPLVAGASVAVILVSLIGVAAMTGLLPSSKSANSPQQ-VAAMEQ--------- 66 K +S R+HPLVA A++ V+LVSL+GVAAMTG+LP+S SA++ ++ +AA+++ Sbjct: 4 KNNSNRIHPLVAAAAIGVLLVSLVGVAAMTGMLPNSNSASAQKEAIAALDKEAAEKAAEA 63 Query: 67 ------------AGQGQQPLVQQQAPQSTSYQPQQGAYQAQAAAPVAQRAAAVCSSCGEV 114 A Q + +QA + +A+ +AP A VC CG V Sbjct: 64 KAAEERANEARMAAQKTEDEKARQARLKEEDRRIAERAKARESAPSKVAQAQVCYDCGRV 123 Query: 115 IGVRTVRHSVPTSGVGIAGGAVVGGLLGNQIGGGTGRTLATIAGAVGGGYAGNEVEKNVR 174 VR+V+ + SGVG+ GGAVVGGLLGNQIG G+GR+LAT+AGAVGGG+AGNE+EK R Sbjct: 124 ESVRSVQTAAKPSGVGVVGGAVVGGLLGNQIGNGSGRSLATVAGAVGGGFAGNEIEKRTR 183 Query: 175 STTSYVVDVRMDNGKTRSFPQTSE-NWRVGDQVRVVNGRLEGR 216 + +Y V VRM++GK R+FP ++ NW GD+VRVV+G L R Sbjct: 184 TAMTYEVRVRMEDGKIRTFPYDNQPNWSAGDRVRVVDGYLRAR 226 >ref|ZP_08276001.1| putative outer membrane lipoprotein [Oxalobacteraceae bacterium IMCC9480] gb|EGF30528.1| putative outer membrane lipoprotein [Oxalobacteraceae bacterium IMCC9480] Length = 199 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 101/199 (50%), Positives = 127/199 (63%), Gaps = 24/199 (12%) Query: 34 VILVSLIGVAAMTGLLPSSK---------------SANSPQQVAAMEQAGQGQQPLVQQQ 78 VILVSL+GVAA+TGLLPSS SA +P + Q +P+V+ Sbjct: 8 VILVSLVGVAAITGLLPSSTANQSAEATVKANSQTSAPAPMLASENTQKSAASEPVVKHA 67 Query: 79 APQSTSYQPQQGAYQAQAAAPVAQRAAAVCSSCGEVIGVRTVRHSVPTSGVGIAGGAVVG 138 +P + +P YQ Q+AAA C +CG V V+T++ + SGVG+ GAV+G Sbjct: 68 SPAKQAPRPATDNYQ--------QQAAASCYNCGRVESVKTIQSAAQPSGVGVGVGAVLG 119 Query: 139 GLLGNQIGGGTGRTLATIAGAVGGGYAGNEVEKNVRSTTSYVVDVRMDNGKTRSFPQTS- 197 GLLGNQ+GGG GRTLAT+AGAVGGGYAGNEVEK R TTSY V VRMD+G+ ++FP S Sbjct: 120 GLLGNQVGGGNGRTLATVAGAVGGGYAGNEVEKRSRGTTSYQVRVRMDDGQLQTFPSDSP 179 Query: 198 ENWRVGDQVRVVNGRLEGR 216 + WR GD+VRVVNG L R Sbjct: 180 DGWRAGDEVRVVNGSLTSR 198 >ref|YP_001352949.1| hypothetical protein mma_1259 [Janthinobacterium sp. Marseille] gb|ABR90548.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 221 Score = 88.2 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 103/215 (47%), Positives = 141/215 (65%), Gaps = 17/215 (7%) Query: 19 SSGRLHPLVAGASVAVILVSLIGVAAMTGLLPSSKSANSPQQVAAM-------------- 64 S+ R+HPL+A A+VAV+LV L+G+AAMTG+LP+S S+ S ++ A Sbjct: 7 STSRIHPLIAAAAVAVLLVCLVGIAAMTGMLPNSNSSGSQKEAIAALEKEAADKAAEAQA 66 Query: 65 --EQAGQGQQPLVQQQAPQSTSYQPQQGAYQAQAAAPVAQRAAAVCSSCGEVIGVRTVRH 122 E+A Q ++ ++QA + + + Q A A A VCS+CG + +R+V+ Sbjct: 67 AEERADQARREADERQAAAAKAAKQAQARENANNKVAQAAPVAQVCSNCGRIESIRSVQT 126 Query: 123 SVPTSGVGIAGGAVVGGLLGNQIGGGTGRTLATIAGAVGGGYAGNEVEKNVRSTTSYVVD 182 + SGVGI GGAVVGGLLGNQIG G GR+LAT+AGAVGGGYAGNE+EK R+ T+Y V Sbjct: 127 AAKPSGVGIVGGAVVGGLLGNQIGNGNGRSLATVAGAVGGGYAGNEIEKRTRTATTYEVR 186 Query: 183 VRMDNGKTRSFPQTSE-NWRVGDQVRVVNGRLEGR 216 VRM++G+ R+FP ++ NW GDQVRVV+G L R Sbjct: 187 VRMEDGRIRTFPYNNQPNWNTGDQVRVVDGYLRAR 221