BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3342.p (513 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776189.1| lysyl-tRNA synthetase [Herbaspirillum serope... 995 0.0 ref|ZP_08276000.1| Lysyl-tRNA synthetase (class II) [Oxalobacter... 858 0.0 ref|YP_004753769.1| Lysyl-tRNA synthetase (class II) [Collimonas... 833 0.0 ref|YP_001352950.1| lysyl-tRNA synthetase [Janthinobacterium sp.... 832 0.0 ref|ZP_04578247.1| lysyl-tRNA synthetase [Oxalobacter formigenes... 831 0.0 >ref|YP_003776189.1| lysyl-tRNA synthetase [Herbaspirillum seropedicae SmR1] gb|ADJ64281.1| lysyl-tRNA synthetase (Class II) protein [Herbaspirillum seropedicae SmR1] Length = 513 Score = 995 bits (2573), Expect = 0.0, Method: Composition-based stats. Identities = 504/513 (98%), Positives = 509/513 (99%) Query: 1 MTTQNTPAAQPAADENSIIAERRAKLAAIREQGVAFPNDFRPANNAADLHAKYDGLENEA 60 MTTQNTPAAQPAADENSIIAERRAKLAAIREQGVAFPNDFRPAN AADLHAKYDG ENEA Sbjct: 1 MTTQNTPAAQPAADENSIIAERRAKLAAIREQGVAFPNDFRPANQAADLHAKYDGFENEA 60 Query: 61 LEAEPVQVTVAGRMMLKRVMGKAAFATLQDASGVRADGRIQLYVTRDVTGEEAMAAFKHY 120 LEAEPV VTVAGRMMLKRVMGKAAFATLQDASGVRADGRIQLY+TRDVTGEEAMAAFKHY Sbjct: 61 LEAEPVTVTVAGRMMLKRVMGKAAFATLQDASGVRADGRIQLYITRDVTGEEAMAAFKHY 120 Query: 121 DLGDILGAEGTLFKTKTGELSIKVTKLKLITKSLRPLPDKFHGLADQEMKYRQRYVDLIM 180 DLGDILGAEGTLFKTKTGELS+KVTKLKLITKSLRPLPDKFHGLADQEMKYRQRYVDLIM Sbjct: 121 DLGDILGAEGTLFKTKTGELSVKVTKLKLITKSLRPLPDKFHGLADQEMKYRQRYVDLIM 180 Query: 181 SEETRRTFKARTAAMSSIRRFMETNGFMEVETPMLHPIPGGAAAKPFITHHNALDMQMFM 240 SEETRRTFKARTAAMSSIRRFMET+GFMEVETPMLHPIPGGAAAKPFITHHNALDMQMFM Sbjct: 181 SEETRRTFKARTAAMSSIRRFMETHGFMEVETPMLHPIPGGAAAKPFITHHNALDMQMFM 240 Query: 241 RIAPELYLKRLVVGGFERVFEVNRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLMGFTEQ 300 RIAPELYLKRLVVGGFERVFE+NRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLMGFTEQ Sbjct: 241 RIAPELYLKRLVVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLMGFTEQ 300 Query: 301 VIRQAAIDAHGTAVLTYQGRELDLSKPFDRLTITGAILKYAPNYTEAQLADIDFLRTELK 360 VIRQAAIDAHGTAVL+YQGRELDLSKPFDRLTITGAILKYAPNYTEAQLADIDFLRTELK Sbjct: 301 VIRQAAIDAHGTAVLSYQGRELDLSKPFDRLTITGAILKYAPNYTEAQLADIDFLRTELK 360 Query: 361 KFGVKTDQAPLAGAGIGALQLALFEETAESQLWNPTYIIDYPVEVSPLARASDTVAGITE 420 KFGVKTDQAPLAGAGIGALQLALFEETAESQLWNPTYIIDYPVEVSPLARASDTVAGITE Sbjct: 361 KFGVKTDQAPLAGAGIGALQLALFEETAESQLWNPTYIIDYPVEVSPLARASDTVAGITE 420 Query: 421 RFELFITGREIANGFSELNDAEDQAARFQAQVAAKDAGDEEAMYYDADYIRALEYGMPPA 480 RFELFITGREIANGFSELNDAEDQAARF AQVAAKDAGDEEAMYYDADYIRALEYGMPPA Sbjct: 421 RFELFITGREIANGFSELNDAEDQAARFHAQVAAKDAGDEEAMYYDADYIRALEYGMPPA 480 Query: 481 GGCGIGIDRLMMLITDSPNIRDVILFPHLRRED 513 GGCGIGIDRLMMLITDSPNIRDVILFPHLRRED Sbjct: 481 GGCGIGIDRLMMLITDSPNIRDVILFPHLRRED 513 >ref|ZP_08276000.1| Lysyl-tRNA synthetase (class II) [Oxalobacteraceae bacterium IMCC9480] gb|EGF30527.1| Lysyl-tRNA synthetase (class II) [Oxalobacteraceae bacterium IMCC9480] Length = 510 Score = 858 bits (2218), Expect = 0.0, Method: Composition-based stats. Identities = 434/512 (84%), Positives = 460/512 (89%), Gaps = 4/512 (0%) Query: 2 TTQNTPAAQPAADENSIIAERRAKLAAIREQGVAFPNDFRPANNAADLHAKYDGLENEAL 61 TT A PA DE+SI+AERR+KLAAIR G+AFPNDFRP + AA LH ++D L+NEAL Sbjct: 3 TTTEVAAGLPAPDEHSILAERRSKLAAIRAAGIAFPNDFRPQHKAAALHLQFDVLDNEAL 62 Query: 62 EAEPVQVTVAGRMMLKRVMGKAAFATLQDASGVRADGRIQLYVTRDVTGEEAMAAFKHYD 121 +A PV+V VAGRMMLKRVMGKA+FATLQDASGVRADGRIQLY+T D G +A AFKHYD Sbjct: 63 DATPVKVVVAGRMMLKRVMGKASFATLQDASGVRADGRIQLYITNDNVGADAHDAFKHYD 122 Query: 122 LGDILGAEGTLFKTKTGELSIKVTKLKLITKSLRPLPDKFHGLADQEMKYRQRYVDLIMS 181 LGDILGAEG LFKTKTGELSIKVT L+LITKSLRPLPDKFHGLADQEMKYRQRYVDLIMS Sbjct: 123 LGDILGAEGLLFKTKTGELSIKVTALRLITKSLRPLPDKFHGLADQEMKYRQRYVDLIMS 182 Query: 182 EETRRTFKARTAAMSSIRRFMETNGFMEVETPMLHPIPGGAAAKPFITHHNALDMQMFMR 241 EETRRTFKARTA MSSIRRFM + FMEVETPMLH IPGGAAAKPFITHHNALDMQMF+R Sbjct: 183 EETRRTFKARTATMSSIRRFMNEHEFMEVETPMLHTIPGGAAAKPFITHHNALDMQMFLR 242 Query: 242 IAPELYLKRLVVGGFERVFEVNRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLMGFTEQV 301 IAPELYLKRLVVGGFERVFEVNRNFRNEGVSPRHNPEFTMMEFYAAYVDY WLM FTE V Sbjct: 243 IAPELYLKRLVVGGFERVFEVNRNFRNEGVSPRHNPEFTMMEFYAAYVDYHWLMDFTEAV 302 Query: 302 IRQAAIDAHGTAVLTYQGRELDLSKPFDRLTITGAILKYAPNYTEAQLADIDFLRTELKK 361 IRQAAIDAHGTA LTYQGRELDLS+PF R TI GAI YAP Y+ QLAD DF++TELKK Sbjct: 303 IRQAAIDAHGTATLTYQGRELDLSQPFRRFTILGAINHYAPQYSAEQLADADFIKTELKK 362 Query: 362 FGVKTDQAPLAGAGIGALQLALFEETAESQLWNPTYIIDYPVEVSPLARASDTVAGITER 421 FGVK P A AG+GALQLALFEETAE+QLW PTYI+DYP EVSPLARASDTV GITER Sbjct: 363 FGVK----PFATAGLGALQLALFEETAEAQLWEPTYIVDYPAEVSPLARASDTVPGITER 418 Query: 422 FELFITGREIANGFSELNDAEDQAARFQAQVAAKDAGDEEAMYYDADYIRALEYGMPPAG 481 FELFI GRE+ANGFSELNDAEDQAARFQAQVAAKDAGDEEAM+YDADYIRALEYGMPPAG Sbjct: 419 FELFICGRELANGFSELNDAEDQAARFQAQVAAKDAGDEEAMFYDADYIRALEYGMPPAG 478 Query: 482 GCGIGIDRLMMLITDSPNIRDVILFPHLRRED 513 GCGIGIDRL+MLITDSPNIRDVILFPHLRRED Sbjct: 479 GCGIGIDRLVMLITDSPNIRDVILFPHLRRED 510 >ref|YP_004753769.1| Lysyl-tRNA synthetase (class II) [Collimonas fungivorans Ter331] gb|AEK62946.1| Lysyl-tRNA synthetase (class II) [Collimonas fungivorans Ter331] Length = 508 Score = 833 bits (2152), Expect = 0.0, Method: Composition-based stats. Identities = 429/513 (83%), Positives = 459/513 (89%), Gaps = 5/513 (0%) Query: 1 MTTQNTPAAQPAADENSIIAERRAKLAAIREQGVAFPNDFRPANNAADLHAKYDGLENEA 60 MTT N P DEN IIAERR KL A+R QGVAFPNDFRP + AA + A+Y ENE Sbjct: 1 MTTDNQQQPVPQ-DENKIIAERRNKLGALRAQGVAFPNDFRPTHKAAAIQAEYAAQENET 59 Query: 61 LEAEPVQVTVAGRMMLKRVMGKAAFATLQDASGVRADGRIQLYVTRDVTGEEAMAAFKHY 120 L+ V+V VAGRMMLKRVMGKA+FATLQDASG +ADGRIQL++T++ GEE +FKHY Sbjct: 60 LDVAAVKVVVAGRMMLKRVMGKASFATLQDASGSKADGRIQLFITKENIGEENYDSFKHY 119 Query: 121 DLGDILGAEGTLFKTKTGELSIKVTKLKLITKSLRPLPDKFHGLADQEMKYRQRYVDLIM 180 DLGDILGAEGTLFKTKTGELSIKVT L+L+TKSLRPLPDKFHGLADQE KYRQRYVDLI+ Sbjct: 120 DLGDILGAEGTLFKTKTGELSIKVTTLRLLTKSLRPLPDKFHGLADQETKYRQRYVDLII 179 Query: 181 SEETRRTFKARTAAMSSIRRFMETNGFMEVETPMLHPIPGGAAAKPFITHHNALDMQMFM 240 +E+TRRTFK RTAAMSSIRRFME N FMEVETPMLH IPGGAAAKPFITHHNALDMQMF+ Sbjct: 180 NEDTRRTFKVRTAAMSSIRRFMEQNDFMEVETPMLHAIPGGAAAKPFITHHNALDMQMFL 239 Query: 241 RIAPELYLKRLVVGGFERVFEVNRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLMGFTEQ 300 RIAPELYLKRLVVGGFERVFEVNRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLM FTEQ Sbjct: 240 RIAPELYLKRLVVGGFERVFEVNRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLMNFTEQ 299 Query: 301 VIRQAAIDAHGTAVLTYQGRELDLSKPFDRLTITGAILKYAPNYTEAQLADIDFLRTELK 360 VIRQAAIDAHGTA LTYQGRELDLSKPF RLTI GAI KYAP Y +AQL D +F++ ELK Sbjct: 300 VIRQAAIDAHGTATLTYQGRELDLSKPFQRLTIVGAINKYAPQYQDAQLQDAEFIKAELK 359 Query: 361 KFGVKTDQAPLAGAGIGALQLALFEETAESQLWNPTYIIDYPVEVSPLARASDTVAGITE 420 KFGVK P A AG+GALQLALFEETAE+QLW+PTYI+DYPVEVSPLARASDTV GITE Sbjct: 360 KFGVK----PHAHAGLGALQLALFEETAEAQLWDPTYIVDYPVEVSPLARASDTVPGITE 415 Query: 421 RFELFITGREIANGFSELNDAEDQAARFQAQVAAKDAGDEEAMYYDADYIRALEYGMPPA 480 RFELF+TGREIANGFSELND+EDQAARFQAQVAAKDAGDEEAMYYDADYIRALEYGMPP Sbjct: 416 RFELFVTGREIANGFSELNDSEDQAARFQAQVAAKDAGDEEAMYYDADYIRALEYGMPPT 475 Query: 481 GGCGIGIDRLMMLITDSPNIRDVILFPHLRRED 513 GGCGIGIDRLMMLITDSPNIRDV+LFPHLRRED Sbjct: 476 GGCGIGIDRLMMLITDSPNIRDVLLFPHLRRED 508 >ref|YP_001352950.1| lysyl-tRNA synthetase [Janthinobacterium sp. Marseille] sp|A6SXF3|SYK_JANMA RecName: Full=Lysyl-tRNA synthetase; AltName: Full=Lysine--tRNA ligase; Short=LysRS gb|ABR88694.1| lysyl-tRNA synthetase [Janthinobacterium sp. Marseille] Length = 511 Score = 832 bits (2150), Expect = 0.0, Method: Composition-based stats. Identities = 426/515 (82%), Positives = 457/515 (88%), Gaps = 6/515 (1%) Query: 1 MTTQNTPAAQP-AADENSIIAERRAKLAAIREQGVAFPNDFRPANNAADLHAKYDGLENE 59 MTT N AA DEN IIAERRAKL+A+REQG+AFPNDFRP + AADLH KYDG E Sbjct: 1 MTTHNDDAAAALPQDENKIIAERRAKLSALREQGIAFPNDFRPQHKAADLHEKYDGKTRE 60 Query: 60 ALEAEPVQVTVAGRMMLKRVMGK-AAFATLQDASGVRADGRIQLYVTRDVTGEEAMAAFK 118 LEAEPV VT+AGRMMLKR GK AAFATLQDASG +ADGRIQ+Y T D+TGE AMAA Sbjct: 61 ELEAEPVTVTLAGRMMLKREAGKKAAFATLQDASGAKADGRIQIYATLDLTGEAAMAALH 120 Query: 119 HYDLGDILGAEGTLFKTKTGELSIKVTKLKLITKSLRPLPDKFHGLADQEMKYRQRYVDL 178 HYDLGDILG GTLFKTKT EL+IKVT+L+L+TKSLRPLPDKFHGLADQE KYRQRYVDL Sbjct: 121 HYDLGDILGVVGTLFKTKTDELTIKVTELRLLTKSLRPLPDKFHGLADQETKYRQRYVDL 180 Query: 179 IMSEETRRTFKARTAAMSSIRRFMETNGFMEVETPMLHPIPGGAAAKPFITHHNALDMQM 238 IM+E+TRRTFKARTAA+SSIRRFM N FMEVETPMLH IPGGAAAKPF+THHNALDM+M Sbjct: 181 IMNEDTRRTFKARTAAISSIRRFMAENDFMEVETPMLHTIPGGAAAKPFVTHHNALDMEM 240 Query: 239 FMRIAPELYLKRLVVGGFERVFEVNRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLMGFT 298 F+RIAPELYLKRLVVGGF+RVFE+NRNFRNEGVS RHNPEFTMMEFYAAY DY+WLM FT Sbjct: 241 FLRIAPELYLKRLVVGGFDRVFEINRNFRNEGVSIRHNPEFTMMEFYAAYTDYKWLMDFT 300 Query: 299 EQVIRQAAIDAHGTAVLTYQGRELDLSKPFDRLTITGAILKYAPNYTEAQLADIDFLRTE 358 E VIRQAAIDAHGTA LTY GRELDL+KPF RLTI GAI KYAP YT QL D +F++ E Sbjct: 301 EAVIRQAAIDAHGTATLTYGGRELDLAKPFHRLTIVGAINKYAPQYTNEQLHDAEFIKAE 360 Query: 359 LKKFGVKTDQAPLAGAGIGALQLALFEETAESQLWNPTYIIDYPVEVSPLARASDTVAGI 418 LKKFGVK P A +G+GALQLALFEETAE+QLW PTYIIDYPVEVSPLARASDTVAGI Sbjct: 361 LKKFGVK----PHAHSGLGALQLALFEETAEAQLWEPTYIIDYPVEVSPLARASDTVAGI 416 Query: 419 TERFELFITGREIANGFSELNDAEDQAARFQAQVAAKDAGDEEAMYYDADYIRALEYGMP 478 TERFELF+ GREIANGFSELNDAEDQAARFQAQVAAKDAGDEEAMYYDADYIRALEYGMP Sbjct: 417 TERFELFMVGREIANGFSELNDAEDQAARFQAQVAAKDAGDEEAMYYDADYIRALEYGMP 476 Query: 479 PAGGCGIGIDRLMMLITDSPNIRDVILFPHLRRED 513 P GGCGIGIDRLMM+ITDSPNIRDV+LFPHLRRED Sbjct: 477 PTGGCGIGIDRLMMIITDSPNIRDVLLFPHLRRED 511 >ref|ZP_04578247.1| lysyl-tRNA synthetase [Oxalobacter formigenes OXCC13] gb|EEO29220.1| lysyl-tRNA synthetase [Oxalobacter formigenes OXCC13] Length = 511 Score = 831 bits (2146), Expect = 0.0, Method: Composition-based stats. Identities = 411/511 (80%), Positives = 460/511 (90%), Gaps = 4/511 (0%) Query: 3 TQNTPAAQPAADENSIIAERRAKLAAIREQGVAFPNDFRPANNAADLHAKYDGLENEALE 62 TQN A PA DENSI+AERRAKLAA+REQGVA+PNDFRP N A D+HA+YDG++NEALE Sbjct: 5 TQNNEPAAPAQDENSIMAERRAKLAALREQGVAYPNDFRPKNKADDIHAQYDGMDNEALE 64 Query: 63 AEPVQVTVAGRMMLKRVMGKAAFATLQDASGVRADGRIQLYVTRDVTGEEAMAAFKHYDL 122 A ++V VAGRMMLKRVMGKA+FATLQDASG++A+GRIQL+++ D TG+EA AFK YD+ Sbjct: 65 AAKIEVCVAGRMMLKRVMGKASFATLQDASGLQANGRIQLFLSNDATGKEAHDAFKRYDI 124 Query: 123 GDILGAEGTLFKTKTGELSIKVTKLKLITKSLRPLPDKFHGLADQEMKYRQRYVDLIMSE 182 GDILGA GTLFKT+TGELS++V++++LITKS+RPLPDKFHGL+DQE+KYRQRYVDLIMSE Sbjct: 125 GDILGATGTLFKTRTGELSVRVSEVRLITKSVRPLPDKFHGLSDQELKYRQRYVDLIMSE 184 Query: 183 ETRRTFKARTAAMSSIRRFMETNGFMEVETPMLHPIPGGAAAKPFITHHNALDMQMFMRI 242 ETR+TFKARTAA++SIRRFM NGFMEVETPMLH IPGGAAAKPFIT+HNALDMQMFMRI Sbjct: 185 ETRKTFKARTAAIASIRRFMGDNGFMEVETPMLHAIPGGAAAKPFITYHNALDMQMFMRI 244 Query: 243 APELYLKRLVVGGFERVFEVNRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLMGFTEQVI 302 APELYLKRL+VGGFERVFE+NRNFRNEGVSPRHNPEFTMMEFYAAYVDY+WLM FTE VI Sbjct: 245 APELYLKRLLVGGFERVFELNRNFRNEGVSPRHNPEFTMMEFYAAYVDYKWLMDFTETVI 304 Query: 303 RQAAIDAHGTAVLTYQGRELDLSKPFDRLTITGAILKYAPNYTEAQLADIDFLRTELKKF 362 RQA +D +GT V+TYQG+ELD SKPF R TI AI KYAP+YT QL D DFLR ELKKF Sbjct: 305 RQAVVDTYGTPVITYQGKELDFSKPFRRFTILEAISKYAPHYTLEQLNDADFLRAELKKF 364 Query: 363 GVKTDQAPLAGAGIGALQLALFEETAESQLWNPTYIIDYPVEVSPLARASDTVAGITERF 422 GVK L AG+GALQLALFEETAE++LW PTYIIDYPVEVSPLARASDT GITERF Sbjct: 365 GVKL----LPTAGVGALQLALFEETAEAKLWEPTYIIDYPVEVSPLARASDTREGITERF 420 Query: 423 ELFITGREIANGFSELNDAEDQAARFQAQVAAKDAGDEEAMYYDADYIRALEYGMPPAGG 482 ELF+ GREIANGFSELND EDQ+ARF QV AKDAGDEEAMYYD+DYIRALEYGMPPAGG Sbjct: 421 ELFMVGREIANGFSELNDPEDQSARFMKQVEAKDAGDEEAMYYDSDYIRALEYGMPPAGG 480 Query: 483 CGIGIDRLMMLITDSPNIRDVILFPHLRRED 513 CGIGIDRL+ML+TDSPNIRDVILFPH+RRED Sbjct: 481 CGIGIDRLVMLLTDSPNIRDVILFPHMRRED 511