BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3341.p (354 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776188.1| peptide chain release factor 2 [Herbaspirill... 637 0.0 ref|YP_001352951.1| peptide chain release factor 2 [Janthinobact... 615 e-174 ref|YP_001100487.1| peptide chain release factor 2 [Herminiimona... 583 e-164 ref|ZP_04578248.1| peptide chain release factor 2 [Oxalobacter f... 570 e-160 ref|ZP_04576058.1| peptide chain release factor 2 [Oxalobacter f... 568 e-160 >ref|YP_003776188.1| peptide chain release factor 2 [Herbaspirillum seropedicae SmR1] gb|ADJ64280.1| peptide chain release factor 2 (RF-2) protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 637 bits (1643), Expect = 0.0, Method: Composition-based stats. Identities = 330/337 (97%), Positives = 335/337 (99%) Query: 18 VKSEKLEQVNAELEDPNVWNDQKRAQDLGKEKKSLEAIVHTLIKIDSELTDARDLFEMAR 77 +KSEKLEQVNAELEDPNVWNDQKRAQDLGKEKKSLEAIVHTLIKIDSELTDARDLFEMAR Sbjct: 1 MKSEKLEQVNAELEDPNVWNDQKRAQDLGKEKKSLEAIVHTLIKIDSELTDARDLFEMAR 60 Query: 78 EEKDEDTIVAIEADAETLKKLVEDMEFRRMFSGPMDANNCFIDIQAGAGGTEAQDWASML 137 EEKDEDTI+AIE DAE LKK+VE+MEFRRMFSGPMDANNCFIDIQAGAGGTEAQDWASML Sbjct: 61 EEKDEDTIIAIEGDAENLKKMVEEMEFRRMFSGPMDANNCFIDIQAGAGGTEAQDWASML 120 Query: 138 LRQYLRYCERKGFKAEILEQSDGEVAGIKTATIKVEGEYAYGFLRTETGVHRLVRKSPFD 197 LRQYLRYCERKGFKAEILEQSDGEVAGIKTATIKVEGEYAYGFLRTETGVHRLVRKSPFD Sbjct: 121 LRQYLRYCERKGFKAEILEQSDGEVAGIKTATIKVEGEYAYGFLRTETGVHRLVRKSPFD 180 Query: 198 SSNGRHTSFSSLFVYPEVDESFEIEINPADVRVDTYRASGAGGQHINKTDSAVRLTHAPT 257 SSNGRHTSFSSLFVYPEVDESFEIEINPADVRVDTYRASGAGGQHINKTDSAVRLTHAP+ Sbjct: 181 SSNGRHTSFSSLFVYPEVDESFEIEINPADVRVDTYRASGAGGQHINKTDSAVRLTHAPS 240 Query: 258 GIVVQCQNDRSQHRNRAEAWDMLRAKLFELELRKRMSEQQKLEDSKTDVGWGHQIRSYVL 317 GIVVQCQNDRSQHRNRAEAWDMLRAKLFELELRKRMSEQQKLEDSKTDVGWGHQIRSYVL Sbjct: 241 GIVVQCQNDRSQHRNRAEAWDMLRAKLFELELRKRMSEQQKLEDSKTDVGWGHQIRSYVL 300 Query: 318 DQSRIKDLRTNFETGNTKAVLDGDIDDFIAASLKQGV 354 DQSRIKDLRTNFETGNTKAVLDGDIDDFIAASLKQGV Sbjct: 301 DQSRIKDLRTNFETGNTKAVLDGDIDDFIAASLKQGV 337 >ref|YP_001352951.1| peptide chain release factor 2 [Janthinobacterium sp. Marseille] sp|A6SXF4|RF2_JANMA RecName: Full=Peptide chain release factor 2; Short=RF-2 gb|ABR88973.1| RF-2 peptide chain release factor [Janthinobacterium sp. Marseille] Length = 367 Score = 615 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 315/341 (92%), Positives = 329/341 (96%) Query: 14 FDFDVKSEKLEQVNAELEDPNVWNDQKRAQDLGKEKKSLEAIVHTLIKIDSELTDARDLF 73 DFDVKSEKL+QVN ELEDP+VWNDQKRAQDLGKEKKSLEAIVHTLIKIDSEL DARDLF Sbjct: 27 LDFDVKSEKLDQVNGELEDPDVWNDQKRAQDLGKEKKSLEAIVHTLIKIDSELNDARDLF 86 Query: 74 EMAREEKDEDTIVAIEADAETLKKLVEDMEFRRMFSGPMDANNCFIDIQAGAGGTEAQDW 133 EMAREEKDEDTIVAIE DA+ L KLVE MEFRRMFS PMDANNCFIDIQAGAGGTEAQDW Sbjct: 87 EMAREEKDEDTIVAIENDAQELLKLVEGMEFRRMFSNPMDANNCFIDIQAGAGGTEAQDW 146 Query: 134 ASMLLRQYLRYCERKGFKAEILEQSDGEVAGIKTATIKVEGEYAYGFLRTETGVHRLVRK 193 ASMLLRQYLRYCERKGFK EILEQSDGEVAGIKTAT+KVEG+YAYGFLRTETGVHRLVRK Sbjct: 147 ASMLLRQYLRYCERKGFKVEILEQSDGEVAGIKTATLKVEGDYAYGFLRTETGVHRLVRK 206 Query: 194 SPFDSSNGRHTSFSSLFVYPEVDESFEIEINPADVRVDTYRASGAGGQHINKTDSAVRLT 253 SPFDS+NGRHTSFSSLFVYPEVD+S EI+INPADVR+DTYRASGAGGQHINKTDSAVRLT Sbjct: 207 SPFDSANGRHTSFSSLFVYPEVDDSIEIDINPADVRIDTYRASGAGGQHINKTDSAVRLT 266 Query: 254 HAPTGIVVQCQNDRSQHRNRAEAWDMLRAKLFELELRKRMSEQQKLEDSKTDVGWGHQIR 313 H P+GIVVQCQNDRSQHRN+AEAWDML+AKLFELE+R RMSEQQKLEDSKTDVGWGHQIR Sbjct: 267 HGPSGIVVQCQNDRSQHRNKAEAWDMLKAKLFELEMRNRMSEQQKLEDSKTDVGWGHQIR 326 Query: 314 SYVLDQSRIKDLRTNFETGNTKAVLDGDIDDFIAASLKQGV 354 SYVLDQSRIKDLRTNFETGNTKAVLDGD+DDFIAASLKQGV Sbjct: 327 SYVLDQSRIKDLRTNFETGNTKAVLDGDLDDFIAASLKQGV 367 >ref|YP_001100487.1| peptide chain release factor 2 [Herminiimonas arsenicoxydans] emb|CAL62364.1| Peptide chain release factor 2 (RF-2) [Herminiimonas arsenicoxydans] Length = 325 Score = 583 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 295/325 (90%), Positives = 310/325 (95%) Query: 30 LEDPNVWNDQKRAQDLGKEKKSLEAIVHTLIKIDSELTDARDLFEMAREEKDEDTIVAIE 89 +EDP VW+D KRAQDLGKEKKSLEAIVHTLIK+D+EL DA DLFEMAREE DEDTIVAIE Sbjct: 1 MEDPKVWDDPKRAQDLGKEKKSLEAIVHTLIKVDAELKDAHDLFEMAREENDEDTIVAIE 60 Query: 90 ADAETLKKLVEDMEFRRMFSGPMDANNCFIDIQAGAGGTEAQDWASMLLRQYLRYCERKG 149 AD + L K VE MEFRRMFSGPMDANNCFIDIQAGAGGTEAQDWASMLLRQYLRYCERKG Sbjct: 61 ADTQELLKTVEGMEFRRMFSGPMDANNCFIDIQAGAGGTEAQDWASMLLRQYLRYCERKG 120 Query: 150 FKAEILEQSDGEVAGIKTATIKVEGEYAYGFLRTETGVHRLVRKSPFDSSNGRHTSFSSL 209 FK EILEQSDGEVAGIKTAT+KVEGEYAYG LRTETGVHRLVRKSPFDS+NGRHTSFSSL Sbjct: 121 FKVEILEQSDGEVAGIKTATLKVEGEYAYGLLRTETGVHRLVRKSPFDSANGRHTSFSSL 180 Query: 210 FVYPEVDESFEIEINPADVRVDTYRASGAGGQHINKTDSAVRLTHAPTGIVVQCQNDRSQ 269 FVYPEVD+S EI+INPADVR+DTYRASGAGGQHINKTDSAVRLTH P+GIVVQCQNDRSQ Sbjct: 181 FVYPEVDDSIEIDINPADVRIDTYRASGAGGQHINKTDSAVRLTHGPSGIVVQCQNDRSQ 240 Query: 270 HRNRAEAWDMLRAKLFELELRKRMSEQQKLEDSKTDVGWGHQIRSYVLDQSRIKDLRTNF 329 HRN+AEAWDML+AKLFELE+R RMSEQQKLEDSKTDVGWGHQIRSYVLDQSRIKDLRTNF Sbjct: 241 HRNKAEAWDMLKAKLFELEMRNRMSEQQKLEDSKTDVGWGHQIRSYVLDQSRIKDLRTNF 300 Query: 330 ETGNTKAVLDGDIDDFIAASLKQGV 354 ETGNTKAVLDGD+DDFIAASLKQGV Sbjct: 301 ETGNTKAVLDGDLDDFIAASLKQGV 325 >ref|ZP_04578248.1| peptide chain release factor 2 [Oxalobacter formigenes OXCC13] gb|EEO29221.1| peptide chain release factor 2 [Oxalobacter formigenes OXCC13] Length = 349 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 288/345 (83%), Positives = 315/345 (91%) Query: 10 FGGIFDFDVKSEKLEQVNAELEDPNVWNDQKRAQDLGKEKKSLEAIVHTLIKIDSELTDA 69 +GGIFDF KS+KLEQVNAELEDP+VWND K+AQDLGKEKKSLE +V +L +I S L DA Sbjct: 5 YGGIFDFAAKSDKLEQVNAELEDPDVWNDPKKAQDLGKEKKSLENVVLSLTRIKSGLDDA 64 Query: 70 RDLFEMAREEKDEDTIVAIEADAETLKKLVEDMEFRRMFSGPMDANNCFIDIQAGAGGTE 129 +LFEMA+EE+D+DT+ A++ D L +E +EFRRMFS PMD NCFIDIQAGAGGTE Sbjct: 65 AELFEMAKEEQDDDTLKAVDDDTLELLDQIEKLEFRRMFSNPMDPCNCFIDIQAGAGGTE 124 Query: 130 AQDWASMLLRQYLRYCERKGFKAEILEQSDGEVAGIKTATIKVEGEYAYGFLRTETGVHR 189 AQDWASM+LRQYLRYCERKGF A ILEQSDGEVAGIKTATIKVEG+YAYG+LRTETGVHR Sbjct: 125 AQDWASMILRQYLRYCERKGFNATILEQSDGEVAGIKTATIKVEGDYAYGYLRTETGVHR 184 Query: 190 LVRKSPFDSSNGRHTSFSSLFVYPEVDESFEIEINPADVRVDTYRASGAGGQHINKTDSA 249 LVRKSPFDSSNGRHTSF SLFVYPEVD+S EI+INPADVRVDTYRASGAGGQHINKTDSA Sbjct: 185 LVRKSPFDSSNGRHTSFCSLFVYPEVDDSIEIDINPADVRVDTYRASGAGGQHINKTDSA 244 Query: 250 VRLTHAPTGIVVQCQNDRSQHRNRAEAWDMLRAKLFELELRKRMSEQQKLEDSKTDVGWG 309 VRLTHAPTGIVVQCQNDRSQHRNRA+AW+ML+++LFELELRKRMSEQQKLEDSKTDVGWG Sbjct: 245 VRLTHAPTGIVVQCQNDRSQHRNRADAWEMLKSRLFELELRKRMSEQQKLEDSKTDVGWG 304 Query: 310 HQIRSYVLDQSRIKDLRTNFETGNTKAVLDGDIDDFIAASLKQGV 354 HQIRSYVLD SRIKDLRTN ETGNTKAVLDGD+DDFI SLKQGV Sbjct: 305 HQIRSYVLDNSRIKDLRTNHETGNTKAVLDGDLDDFILESLKQGV 349 >ref|ZP_04576058.1| peptide chain release factor 2 [Oxalobacter formigenes HOxBLS] gb|EEO27020.1| peptide chain release factor 2 [Oxalobacter formigenes HOxBLS] Length = 349 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 282/347 (81%), Positives = 316/347 (91%) Query: 8 PSFGGIFDFDVKSEKLEQVNAELEDPNVWNDQKRAQDLGKEKKSLEAIVHTLIKIDSELT 67 P +GGIFDF KS+KLEQVNAELEDP VWND K+AQ+LG+EKKSLE +V +L I S LT Sbjct: 3 PPYGGIFDFAAKSDKLEQVNAELEDPAVWNDPKKAQELGREKKSLENVVLSLSHIKSALT 62 Query: 68 DARDLFEMAREEKDEDTIVAIEADAETLKKLVEDMEFRRMFSGPMDANNCFIDIQAGAGG 127 DA +LFEMA+EE+D++T+ A+EAD L+ +E +EFRRMFS PMD NCF+DIQAGAGG Sbjct: 63 DAGELFEMAKEEQDDETLKAVEADVSELQDRIEKLEFRRMFSNPMDPCNCFVDIQAGAGG 122 Query: 128 TEAQDWASMLLRQYLRYCERKGFKAEILEQSDGEVAGIKTATIKVEGEYAYGFLRTETGV 187 TEAQDWASM+LRQYLRYCERKGF A ILEQSDGE+AGIKTATIKVEG+YAYG+LRTETGV Sbjct: 123 TEAQDWASMILRQYLRYCERKGFNATILEQSDGEIAGIKTATIKVEGDYAYGYLRTETGV 182 Query: 188 HRLVRKSPFDSSNGRHTSFSSLFVYPEVDESFEIEINPADVRVDTYRASGAGGQHINKTD 247 HRLVRKSPFDS+NGRHTSF SLFVYPEVD+S EI+INPADVRVDTYRASGAGGQHINKTD Sbjct: 183 HRLVRKSPFDSANGRHTSFCSLFVYPEVDDSIEIDINPADVRVDTYRASGAGGQHINKTD 242 Query: 248 SAVRLTHAPTGIVVQCQNDRSQHRNRAEAWDMLRAKLFELELRKRMSEQQKLEDSKTDVG 307 SAVRLTH PTGIVVQCQNDRSQHRNRA+AW+ML+++L+ELELRKRM+EQQKLEDSKTDVG Sbjct: 243 SAVRLTHIPTGIVVQCQNDRSQHRNRADAWEMLKSRLYELELRKRMAEQQKLEDSKTDVG 302 Query: 308 WGHQIRSYVLDQSRIKDLRTNFETGNTKAVLDGDIDDFIAASLKQGV 354 WGHQIRSYVLD SRIKDLRT+ ETGNTKAVLDGD+DDFI SLKQGV Sbjct: 303 WGHQIRSYVLDSSRIKDLRTSHETGNTKAVLDGDLDDFIIESLKQGV 349