BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3337.p (393 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776185.1| hypothetical protein Hsero_2782 [Herbaspiril... 592 e-167 ref|YP_933830.1| putative signaling protein [Azoarcus sp. BH72] ... 316 4e-84 ref|NP_901521.1| hypothetical protein CV_1851 [Chromobacterium v... 314 2e-83 gb|EGW60730.1| diguanylate cyclase [Dechlorosoma suillum PS] 299 6e-79 ref|YP_003442952.1| diguanylate cyclase [Allochromatium vinosum ... 261 2e-67 >ref|YP_003776185.1| hypothetical protein Hsero_2782 [Herbaspirillum seropedicae SmR1] gb|ADJ64277.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 601 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 328/384 (85%), Positives = 350/384 (91%), Gaps = 2/384 (0%) Query: 11 GGSTELNAPGFLDHLQRARLGPTGSFLLISPSQRLIIASSDEALLYSQLPPVGKDPLMDR 70 GGSTEL A GFLDHLQRA+LGPTGSFLLISP QR+I+ASSDEAL+Y++LP G+D LMD+ Sbjct: 219 GGSTELTAAGFLDHLQRAQLGPTGSFLLISPEQRMIVASSDEALVYTRLPATGQDLLMDQ 278 Query: 71 ALQQGFRGNGVGLAANGINEIKAFASIPGTSWLVAVTLPLADALPTVERTRALIGRGGLI 130 ALQ GFRGNGVGLAANG+NEIKAFA +PGTSWLVA TLPLA ALPTVERTRALI RGGLI Sbjct: 279 ALQ-GFRGNGVGLAANGVNEIKAFAPVPGTSWLVAATLPLAAALPTVERTRALIARGGLI 337 Query: 131 QGAMVILLVTLAYLWFFRPLRRAAALADRMTRGELPLSPLPVERRDEVGHLTMAFNGLLS 190 Q AMV+LLV LAYLWFFRPLRRAAALADRMTRGELPLSPLPV+RRDEVG LTMAFNGLL+ Sbjct: 338 QAAMVVLLVVLAYLWFFRPLRRAAALADRMTRGELPLSPLPVDRRDEVGQLTMAFNGLLA 397 Query: 191 RLKLHQAELQHQAHHDVLTGLPNRMMLAERMEAALTHACRERNGVALLFLDLDGFKPIND 250 RLKLHQAELQHQAHHDVLTGLPNRMMLAERM+AALTHACRERNGV LLFLDLDGFKPIND Sbjct: 398 RLKLHQAELQHQAHHDVLTGLPNRMMLAERMQAALTHACRERNGVGLLFLDLDGFKPIND 457 Query: 251 TLGHKAGDQVLQEVTRRLRQVARHGDTLARVGGDEFVLLITDLGQPYENGAQVLAEKCIR 310 TLGHKAGDQVLQE+TRRLRQVARHGDTLARVGGDEFVLL+TDL P+E GAQ LAEKCI+ Sbjct: 458 TLGHKAGDQVLQEITRRLRQVARHGDTLARVGGDEFVLLVTDLRLPFEQGAQALAEKCIK 517 Query: 311 VVSEPLHLAQGEYQLGVSVGIAVCDGSCDADSLLQAADKAMYAAKGNGRGCYVIAPAWPG 370 VSEP+ L Q +Y+LGVSVGIAVCDGSCDADSLLQAAD+AMYAAK NGRGCYVIAPA P Sbjct: 518 TVSEPICLDQRQYRLGVSVGIAVCDGSCDADSLLQAADQAMYAAKANGRGCYVIAPARPA 577 Query: 371 VPG-ELSAPAGTAGMTRPAGSAHS 393 LSAPA TAG TRPA SAHS Sbjct: 578 CANTALSAPAETAGTTRPADSAHS 601 >ref|YP_933830.1| putative signaling protein [Azoarcus sp. BH72] emb|CAL94943.1| conserved hypothetical signaling protein [Azoarcus sp. BH72] Length = 547 Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 181/357 (50%), Positives = 229/357 (64%), Gaps = 2/357 (0%) Query: 12 GSTELNAPGFLDHLQRARLGPTGSFLLISPSQRLIIASSDEALLYSQLPPVGKDPLMDRA 71 G T L AP FLD + R+G +G FLL+SP+ RL +A+ L PP G +PL D+A Sbjct: 180 GLTALAAPDFLDRISHGRIGESGGFLLVSPADRLFVAAGRPELAMKPTPPSGVNPLHDKA 239 Query: 72 LQQGFRGNGVGLAANGINEIKAFASIPGTSWLVAVTLPLADALPTVERTRALIGRGGLIQ 131 + GFRG GV A G+ E+ A AS+P T W V LP A+A V R + ++ R +I Sbjct: 240 MD-GFRGAGVTTNAQGVEEVSAIASVPSTGWFVVARLPTAEAYAPVRRAQEVVIRQSMIA 298 Query: 132 GAMVILLVTLAYLWFFRPLRRAAALADRMTRGELPLSPLPVERRDEVGHLTMAFNGLLSR 191 A+V+ + PL RAA LA+RMT GELPL+PLPV R DEVG LT AFN LL + Sbjct: 299 VALVLGVAGFFIRRMLGPLHRAARLAERMTAGELPLAPLPVVRDDEVGLLTRAFNQLLGK 358 Query: 192 LKLHQAELQHQAHHDVLTGLPNRMMLAERMEAALTHACRERNGVALLFLDLDGFKPINDT 251 L Q +LQ AHHD LTGLPNR++LA+R+ L A R+ + +A L+LDLDGFKPIND+ Sbjct: 359 LTASQVDLQRMAHHDELTGLPNRVLLADRLRQGLARARRKDSRIAALYLDLDGFKPINDS 418 Query: 252 LGHKAGDQVLQEVTRRLRQVARHGDTLARVGGDEFVLLITDLGQPYE-NGAQVLAEKCIR 310 LGH+AGD L++V+ RLR V R DTLARVGGDEFVLL+TDL + G LA +CI Sbjct: 419 LGHEAGDIALRDVSARLRAVLRQSDTLARVGGDEFVLLVTDLASREDCAGVTELARRCIE 478 Query: 311 VVSEPLHLAQGEYQLGVSVGIAVCDGSCDADSLLQAADKAMYAAKGNGRGCYVIAPA 367 V+ PL + ++GVS+GIA D +S+L AAD AMY AK GRGCY IA A Sbjct: 479 AVAPPLSIKGHTLRVGVSIGIAFGAAHDDPESVLMAADHAMYEAKKAGRGCYRIAEA 535 >ref|NP_901521.1| hypothetical protein CV_1851 [Chromobacterium violaceum ATCC 12472] gb|AAQ59525.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 545 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 172/348 (49%), Positives = 221/348 (63%), Gaps = 2/348 (0%) Query: 12 GSTELNAPGFLDHLQRARLGP-TGSFLLISPSQRLIIASSDEALLYSQLPPVGKDPLMDR 70 G T ++APGFLD LQ++R+G SFLL+SP R IIA+S L P G++PL D+ Sbjct: 190 GVTAISAPGFLDLLQQSRIGDHRDSFLLVSPRDRQIIAASQSELTLQSTPAPGQNPLYDQ 249 Query: 71 ALQQGFRGNGVGLAANGINEIKAFASIPGTSWLVAVTLPLADALPTVERTRALIGRGGLI 130 A+ G+RG V G E++A +P T W + LP ++A TV R + R LI Sbjct: 250 AMA-GYRGAAVAATPQGEEEVRAVVQVPSTGWFLVARLPGSEAFATVARVQNFTLRQALI 308 Query: 131 QGAMVILLVTLAYLWFFRPLRRAAALADRMTRGELPLSPLPVERRDEVGHLTMAFNGLLS 190 + +L RPL RAA ADRMTRGELPL PLP+ R+DEVGHL AFN LL Sbjct: 309 AFLVFSVLACGGMYIVLRPLFRAARHADRMTRGELPLEPLPIRRKDEVGHLIAAFNRLLR 368 Query: 191 RLKLHQAELQHQAHHDVLTGLPNRMMLAERMEAALTHACRERNGVALLFLDLDGFKPIND 250 +L+ Q EL AHHD LTGLPNR +L++R+ AL A R +ALLF+DLD FK IND Sbjct: 369 KLEDKQTELAQMAHHDALTGLPNRSLLSDRLHVALAQAQRRDTRLALLFMDLDSFKLIND 428 Query: 251 TLGHKAGDQVLQEVTRRLRQVARHGDTLARVGGDEFVLLITDLGQPYENGAQVLAEKCIR 310 +LGHKAGD+VL + +RL + R DTLAR+GGDEFVLLI+DL E+ A+ +A KC+ Sbjct: 429 SLGHKAGDKVLWQAAQRLSGIVRQSDTLARIGGDEFVLLISDLDDKAEDVARTVANKCLE 488 Query: 311 VVSEPLHLAQGEYQLGVSVGIAVCDGSCDADSLLQAADKAMYAAKGNG 358 + P ++ QLG+S+GIA+ DG ADSLLQAAD+AMY K G Sbjct: 489 AFNVPFLVSGTACQLGISIGIAIGDGYSSADSLLQAADQAMYRVKKTG 536 >gb|EGW60730.1| diguanylate cyclase [Dechlorosoma suillum PS] Length = 538 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 184/363 (50%), Positives = 235/363 (64%), Gaps = 1/363 (0%) Query: 3 RARSSAYWGGSTELNAPGFLDHLQRARLGPTGSFLLISPSQRLIIASSDEALLYSQLPPV 62 + R A G T L PGFL+ L ++R+G +G FLLISP R+ +A+++ L+ PP Sbjct: 175 QGRVQAALVGLTPLATPGFLNLLLQSRIGRSGGFLLISPRDRVFVAATEPELVLKPTPPA 234 Query: 63 GKDPLMDRALQQGFRGNGVGLAANGINEIKAFASIPGTSWLVAVTLPLADALPTVERTRA 122 G +PL DRA+ G+RG G+ + A G+ E A S+P W V LP A+A V R + Sbjct: 235 GVNPLHDRAMA-GYRGTGITVNAKGVEEAVAIVSVPSAEWFVVARLPTAEAFEPVTRVQQ 293 Query: 123 LIGRGGLIQGAMVILLVTLAYLWFFRPLRRAAALADRMTRGELPLSPLPVERRDEVGHLT 182 I R ++ + ++L +L FRPLRR A ADRMTRGE PL PLPV R DEVGHLT Sbjct: 294 YILRNSVVVSLVFLVLASLGLAHVFRPLRRTAEHADRMTRGECPLEPLPVLRNDEVGHLT 353 Query: 183 MAFNGLLSRLKLHQAELQHQAHHDVLTGLPNRMMLAERMEAALTHACRERNGVALLFLDL 242 AFN LL +L QA L AHHD LTGLPNRM+LA+R+ A A R+ + +ALLFLDL Sbjct: 354 AAFNRLLRKLSESQAALAQAAHHDALTGLPNRMLLADRLSQARVLAQRKGSRIALLFLDL 413 Query: 243 DGFKPINDTLGHKAGDQVLQEVTRRLRQVARHGDTLARVGGDEFVLLITDLGQPYENGAQ 302 DGFKPIND+LGH+AGD+VL+ V RL R DTLARVGGDEFV+L+ DL E A Sbjct: 414 DGFKPINDSLGHEAGDEVLRLVAGRLSGCVRASDTLARVGGDEFVILMGDLDSQAEQAAA 473 Query: 303 VLAEKCIRVVSEPLHLAQGEYQLGVSVGIAVCDGSCDADSLLQAADKAMYAAKGNGRGCY 362 +A KCI ++EP + +LGVS+GIA+ DG A++LL AD+AMY AK +GRG Y Sbjct: 474 RVAAKCIEALAEPFPVQDQSCRLGVSIGIALGDGESAANTLLLQADQAMYRAKESGRGRY 533 Query: 363 VIA 365 VIA Sbjct: 534 VIA 536 >ref|YP_003442952.1| diguanylate cyclase [Allochromatium vinosum DSM 180] gb|ADC61920.1| diguanylate cyclase [Allochromatium vinosum DSM 180] Length = 535 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 156/356 (43%), Positives = 213/356 (59%), Gaps = 4/356 (1%) Query: 12 GSTELNAPGFLDHLQRARLGPTGSFLLISPSQRLIIASSDEALLYSQLPPVGKDPLMDRA 71 G + L +P FL L R+G +G F+L SP RL I +S + + P G D A Sbjct: 180 GVSGLKSPNFLQALYETRVGVSGGFILTSPRDRLFIGASFRDITLTPTPQEGLHRQHDMA 239 Query: 72 LQQGFRGNGVGLAANGINEIKAFASIPGTSWLVAVTLPLADALPTVERTRALIGRGGLIQ 131 +Q GFRG G+ + A GI E+ A AS+ + W + +P + +ER + G I Sbjct: 240 MQ-GFRGVGIDVNAGGIEELAAIASVSTSGWFLVARIPTRELFAPIERLSDFMLTIGAIL 298 Query: 132 GAMVILLVTLAYLWFFRPLRRAAALADRMTRGELPLSPLPVERRDEVGHLTMAFNGLLSR 191 + +L++ + RPLR AA A+ MTRGE+PL+PLPV R DEVGHLT AFN +L + Sbjct: 299 ACVFLLVMVIGLRHQLRPLREAAHHAECMTRGEIPLAPLPVARDDEVGHLTAAFNRVLEK 358 Query: 192 LKLHQAELQHQAHHDVLTGLPNRMMLAERMEAALTHACRERNGVALLFLDLDGFKPINDT 251 L +AE+++ A HD LTGLPNR +LA ++ A + A R G+A+L+LDLDGFK IND Sbjct: 359 LLESRAEMEYLARHDGLTGLPNRQLLATHVQHAQSRAQRHGYGLAILYLDLDGFKAINDR 418 Query: 252 LGHKAGDQVLQEVTRRLRQVARHGDTLARVGGDEFVLLITDLGQPYE--NGAQVLAEKCI 309 LGH AGD L E +RL V R DTLAR+GGDEFV+L+ DL P E A+++A KC+ Sbjct: 419 LGHGAGDAALCETAKRLSGVIRGEDTLARIGGDEFVILLADL-DPDEAREVAELVARKCL 477 Query: 310 RVVSEPLHLAQGEYQLGVSVGIAVCDGSCDADSLLQAADKAMYAAKGNGRGCYVIA 365 V P+ + + +LG S+G+ + G D+LL AAD AMY AK GRG + A Sbjct: 478 GVFERPVRVQDQDCRLGTSLGLVLDHGERTLDALLTAADMAMYRAKEAGRGRFCWA 533