BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3336.p (190 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776185.1| hypothetical protein Hsero_2782 [Herbaspiril... 280 9e-74 ref|YP_003442952.1| diguanylate cyclase [Allochromatium vinosum ... 116 2e-24 ref|NP_901521.1| hypothetical protein CV_1851 [Chromobacterium v... 111 5e-23 ref|YP_933830.1| putative signaling protein [Azoarcus sp. BH72] ... 109 2e-22 gb|EGW60730.1| diguanylate cyclase [Dechlorosoma suillum PS] 99 2e-19 >ref|YP_003776185.1| hypothetical protein Hsero_2782 [Herbaspirillum seropedicae SmR1] gb|ADJ64277.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 601 Score = 280 bits (715), Expect = 9e-74, Method: Composition-based stats. Identities = 140/189 (74%), Positives = 164/189 (86%) Query: 1 MKLKRIHCSLVTRLVLFGLLLIVGSALLRYHILIGFLEKEQAQVAADQQSTIASYLAEDI 60 MK+KR CSLVTRLVLFGL+LI SA+LRYHILIGFLEKEQAQVAADQQS IASYLA+DI Sbjct: 41 MKIKRFDCSLVTRLVLFGLMLIGISAVLRYHILIGFLEKEQAQVAADQQSIIASYLAQDI 100 Query: 61 GYRVQERARYLERLARHMPSPMLDDRAAIRAWLQDHQELQPLFAQGLFVADANGLIVVDY 120 GYRVQER RYLERLA H+P+ L+D A++AWL++HQELQPLFAQG+FVA ANG I+VDY Sbjct: 101 GYRVQERVRYLERLALHLPADRLEDGHAMQAWLREHQELQPLFAQGMFVAAANGQILVDY 160 Query: 121 PTLNGRRALSLTQYTDFERVLQGATVICPPLVSPASGKPIIAMLTPLRNAQGQIVGVLGG 180 PTLNGRRALSL Y DF+RVLQGATVICPPL+SPA+G+PI+A+LTP+R+A G++VG+LGG Sbjct: 161 PTLNGRRALSLADYPDFKRVLQGATVICPPLLSPATGRPIMAVLTPVRDAHGRVVGILGG 220 Query: 181 EHRTQCPGL 189 G Sbjct: 221 STELTAAGF 229 >ref|YP_003442952.1| diguanylate cyclase [Allochromatium vinosum DSM 180] gb|ADC61920.1| diguanylate cyclase [Allochromatium vinosum DSM 180] Length = 535 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 63/179 (35%), Positives = 104/179 (58%) Query: 9 SLVTRLVLFGLLLIVGSALLRYHILIGFLEKEQAQVAADQQSTIASYLAEDIGYRVQERA 68 S+ RL+L G+ +I+ +A + + +L L ++ ++ ++Q T+A+Y+A I + R Sbjct: 9 SMAQRLILLGMAIILLNAFILFGLLDRHLRQDLTELTSNQLLTLANYVAAQIDRDILNRR 68 Query: 69 RYLERLARHMPSPMLDDRAAIRAWLQDHQELQPLFAQGLFVADANGLIVVDYPTLNGRRA 128 L +A H+P +L+D A+R L +HQ + PLF++GL V D +G ++ D+P++ GR A Sbjct: 69 ELLRHVAGHLPPALLEDGTALRDRLAEHQAVNPLFSEGLVVLDESGRVIADHPSVPGRDA 128 Query: 129 LSLTQYTDFERVLQGATVICPPLVSPASGKPIIAMLTPLRNAQGQIVGVLGGEHRTQCP 187 LSL F + +QG I PL S AS P++ M PLR+A G + VL G + P Sbjct: 129 LSLGDSDYFRQAIQGEFAIGRPLFSSASKAPVLPMAVPLRDADGPVRAVLVGVSGLKSP 187 >ref|NP_901521.1| hypothetical protein CV_1851 [Chromobacterium violaceum ATCC 12472] gb|AAQ59525.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 545 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 63/189 (33%), Positives = 103/189 (54%), Gaps = 1/189 (0%) Query: 1 MKLKRIHCSLVTRLVLFGLLLIVGSALLRYHILIGFLEKEQAQVAADQQSTIASYLAEDI 60 MK++R+ S++ RL+ L +++ L RY+ L FL ++ QV ++QQ +A Y+A DI Sbjct: 12 MKVRRLLDSIIIRLLALSLAIMIIGVLSRYYTLGSFLRQDLGQVVSEQQLALAGYVAHDI 71 Query: 61 GYRVQERARYLERLARHMPSPMLDDRAAIRAWLQDHQELQPLFAQGLFVADANGLIVVDY 120 ++ +R L RLA +P +LD+ A+RAWL++ + QPLF GLFV +G + DY Sbjct: 72 DDKINQRKALLSRLATALPPELLDNPDALRAWLKERYQYQPLFTIGLFVVRPDGRAIADY 131 Query: 121 PTLNGRRALSLTQYTDFERVLQGATVICPPLVSPASGKPIIAMLTPLRNAQGQIVGVLGG 180 P + R ++ ++ L G I + +SG P++ M P+R G++ VL G Sbjct: 132 PVVPHRMQVNYGDRDYIQQSLAGQFYIGKAVTGRSSGVPVLPMSAPIRIG-GEVPAVLVG 190 Query: 181 EHRTQCPGL 189 PG Sbjct: 191 VTAISAPGF 199 >ref|YP_933830.1| putative signaling protein [Azoarcus sp. BH72] emb|CAL94943.1| conserved hypothetical signaling protein [Azoarcus sp. BH72] Length = 547 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 103/180 (57%) Query: 1 MKLKRIHCSLVTRLVLFGLLLIVGSALLRYHILIGFLEKEQAQVAADQQSTIASYLAEDI 60 M LKR+ SL+ RL+ FGLLL++ + RY++L +L ++ Q+ + QQ A +A+DI Sbjct: 1 MTLKRVSQSLLARLIAFGLLLVILGSFARYYLLAKYLREDLTQLVSAQQLAYAEAVAQDI 60 Query: 61 GYRVQERARYLERLARHMPSPMLDDRAAIRAWLQDHQELQPLFAQGLFVADANGLIVVDY 120 ++++ER R L+RLA +P +LDD + AWL + +L P+F+ G+ VAD G ++ DY Sbjct: 61 DFKLRERLRLLQRLAATLPQTLLDDPERLGAWLAERHKLNPVFSLGIVVADTRGTVLADY 120 Query: 121 PTLNGRRALSLTQYTDFERVLQGATVICPPLVSPASGKPIIAMLTPLRNAQGQIVGVLGG 180 P GR SL DF L+G I P +G ++ M PLR G + VL G Sbjct: 121 PAAPGRSGGSLAGDPDFTHALKGEGRIGRPKTGLFTGARLLPMSVPLRARDGSVRAVLIG 180 >gb|EGW60730.1| diguanylate cyclase [Dechlorosoma suillum PS] Length = 538 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 63/189 (33%), Positives = 102/189 (53%) Query: 1 MKLKRIHCSLVTRLVLFGLLLIVGSALLRYHILIGFLEKEQAQVAADQQSTIASYLAEDI 60 M+L+++ S++ R++L GL ++V RY IL FL ++ +V A QQ +ASY+A D+ Sbjct: 5 MRLRQLSHSIILRILLLGLGIVVVGTTARYFILSQFLREDLDKVVASQQQALASYVARDV 64 Query: 61 GYRVQERARYLERLARHMPSPMLDDRAAIRAWLQDHQELQPLFAQGLFVADANGLIVVDY 120 ++ ER L+RLA +P +L +RAWLQ+ EL PLF QGL + D+ G I+ D+ Sbjct: 65 DSKLVERRDLLQRLAASLPRQLLGQPRQLRAWLQERHELHPLFNQGLLLVDSRGAILADF 124 Query: 121 PTLNGRRALSLTQYTDFERVLQGATVICPPLVSPASGKPIIAMLTPLRNAQGQIVGVLGG 180 P + ++L + L G + P +P++ M P+R+ QG++ L G Sbjct: 125 PERPLQARINLADREYVQAALAGEASLGRPAPDWLDREPVLPMAAPVRDEQGRVQAALVG 184 Query: 181 EHRTQCPGL 189 PG Sbjct: 185 LTPLATPGF 193