BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3335.p (564 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776184.1| single-stranded-DNA-specific exonuclease [He... 1068 0.0 ref|YP_001100485.1| ssDNA exonuclease [Herminiimonas arsenicoxyd... 907 0.0 ref|YP_001352953.1| single-stranded-DNA-specific exonuclease pro... 884 0.0 ref|ZP_08273599.1| Single-stranded-DNA-specific exonuclease recJ... 879 0.0 ref|YP_004753761.1| single-stranded-DNA-specific exonuclease rec... 879 0.0 >ref|YP_003776184.1| single-stranded-DNA-specific exonuclease [Herbaspirillum seropedicae SmR1] gb|ADJ64276.1| single-stranded-DNA-specific exonuclease protein [Herbaspirillum seropedicae SmR1] Length = 564 Score = 1068 bits (2763), Expect = 0.0, Method: Composition-based stats. Identities = 542/564 (96%), Positives = 554/564 (98%) Query: 1 MIRVTTRSYDISQAEQLIAEGVHPVLARVYAARGLSTARELASELNALIAPSGLLHIEAA 60 MIRV TR+YD+ QAEQLI EGVHPVLARVYAARGLS+ARELASELNALIAPSGLLHI+AA Sbjct: 1 MIRVATRTYDLVQAEQLINEGVHPVLARVYAARGLSSARELASELNALIAPSGLLHIDAA 60 Query: 61 ASYLADAIAERKKLVIVADYDCDGATACAVGLRGLRLLGAQVDYIVPNRFEYGYGLTPEI 120 ASYLADAIA RKKLVIVADYDCDGATACAVGLRGLRLLGAQVDYIVPNRFEYGYGLTPEI Sbjct: 61 ASYLADAIAARKKLVIVADYDCDGATACAVGLRGLRLLGAQVDYIVPNRFEYGYGLTPEI 120 Query: 121 VELTVREKNPDIIVTVDNGIASIDGVAEAKRRGIDVVVTDHHLPGDALPDARVIVNPNQP 180 VELTVREKNPDIIVTVDNGIASIDGVAEAKRRGIDVVVTDHHLPGDALP ARVIVNPNQP Sbjct: 121 VELTVREKNPDIIVTVDNGIASIDGVAEAKRRGIDVVVTDHHLPGDALPQARVIVNPNQP 180 Query: 181 QCGFPSKNLAGVGVMFYVLLALRAEMRKRGLFDAQTQPRLDSLLDLVALGTVADVVKLDA 240 QCGFPSKNLAGVGVMFYVLLALRAEMRKRGLFDAQTQPRLDSLLDLVALGTVADVVKLDA Sbjct: 181 QCGFPSKNLAGVGVMFYVLLALRAEMRKRGLFDAQTQPRLDSLLDLVALGTVADVVKLDA 240 Query: 241 NNRILVAQGLKRMRSGKMHPGIAALFRAAGREARRATPFDLGFAVGPRLNAAGRLADMSL 300 NNRILVAQGLKRMRSGKMHPGIAALFRAAGREARRATPFDLGFAVGPRLNAAGRLADMSL Sbjct: 241 NNRILVAQGLKRMRSGKMHPGIAALFRAAGREARRATPFDLGFAVGPRLNAAGRLADMSL 300 Query: 301 GIECLTTDDEGRAWAIAQQLDAINRERRDIEAGMQDTALLLLDDFNPADRRTIAVFDPSW 360 GIECLTTDDEGRAWAIAQQLDAINRERRDIEAGMQDTALLLLDD+NPADRRTIAVFDPSW Sbjct: 301 GIECLTTDDEGRAWAIAQQLDAINRERRDIEAGMQDTALLLLDDYNPADRRTIAVFDPSW 360 Query: 361 HQGVIGIVASRLKDKFYRPTITFAPGDEGFIKGSGRSIAGFHLRDALDLVSKHAPSVMTK 420 HQGVIGIVASRLKDKFYRPTITFAPGDEGFIKGSGRSIAGFHLRDALDLVSKHAPSVMTK Sbjct: 361 HQGVIGIVASRLKDKFYRPTITFAPGDEGFIKGSGRSIAGFHLRDALDLVSKHAPSVMTK 420 Query: 421 FGGHAMAAGLTIHADAFDAFSQAFEAVGRDWLTQNQLERVIETDGELEDSYYSVEFITLM 480 FGGHAMAAGLTIHA+AFDAFS AFEAVGRDWLTQNQLERVIETDG LED+YYSVEFITLM Sbjct: 421 FGGHAMAAGLTIHAEAFDAFSHAFEAVGRDWLTQNQLERVIETDGVLEDAYYSVEFITLM 480 Query: 481 DQQVWGQGFAPPVFCDHFRVLSQRILKEKHLKLQLEKGGLKYDAIWFGHTDALPDHAKVA 540 DQQVWGQGFAPPVFCDHFRVL+QRILKEKHLKLQLEK G +YDAIWFGHTD+LP+ AKVA Sbjct: 481 DQQVWGQGFAPPVFCDHFRVLNQRILKEKHLKLQLEKDGRRYDAIWFGHTDSLPELAKVA 540 Query: 541 FRLDANEYNGKTTVQLMVEHAEPA 564 FRLDANEYNG+TTVQLMVEHAEPA Sbjct: 541 FRLDANEYNGRTTVQLMVEHAEPA 564 >ref|YP_001100485.1| ssDNA exonuclease [Herminiimonas arsenicoxydans] emb|CAL62362.1| Single-stranded-DNA-specific exonuclease RecJ [Herminiimonas arsenicoxydans] Length = 564 Score = 907 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 453/562 (80%), Positives = 506/562 (90%) Query: 1 MIRVTTRSYDISQAEQLIAEGVHPVLARVYAARGLSTARELASELNALIAPSGLLHIEAA 60 M R+TTR Y AE++ GVHPV+AR+Y ARGL +EL SEL+ALI P GLLHI+ A Sbjct: 1 MTRITTRPYPFRDAERMRQSGVHPVMARLYTARGLLDLKELTSELSALIPPPGLLHIDVA 60 Query: 61 ASYLADAIAERKKLVIVADYDCDGATACAVGLRGLRLLGAQVDYIVPNRFEYGYGLTPEI 120 A +LADAIA++KKLVIVADYDCDGATACAV LRGLR +GA VD+IVPNRFEYGYGLTPEI Sbjct: 61 AVFLADAIADKKKLVIVADYDCDGATACAVALRGLRAMGAIVDFIVPNRFEYGYGLTPEI 120 Query: 121 VELTVREKNPDIIVTVDNGIASIDGVAEAKRRGIDVVVTDHHLPGDALPDARVIVNPNQP 180 V L VREK+PDIIVTVDNGIASIDGVAEA RRGIDVVVTDHHLP D LP ARVIVNPNQP Sbjct: 121 VALAVREKSPDIIVTVDNGIASIDGVAEANRRGIDVVVTDHHLPADTLPAARVIVNPNQP 180 Query: 181 QCGFPSKNLAGVGVMFYVLLALRAEMRKRGLFDAQTQPRLDSLLDLVALGTVADVVKLDA 240 CGFPSKNLAGVGVMFYVLLALRAEMRKRG+FDAQTQP+LD+LLDLVALGTVADVVKLDA Sbjct: 181 DCGFPSKNLAGVGVMFYVLLALRAEMRKRGIFDAQTQPKLDALLDLVALGTVADVVKLDA 240 Query: 241 NNRILVAQGLKRMRSGKMHPGIAALFRAAGREARRATPFDLGFAVGPRLNAAGRLADMSL 300 NNRILVAQGLKRMR+G+MH GIAALFRAAGREAR A+PFDLGFA+GPRLNAAGRL+DMSL Sbjct: 241 NNRILVAQGLKRMRAGRMHAGIAALFRAAGREARSASPFDLGFALGPRLNAAGRLSDMSL 300 Query: 301 GIECLTTDDEGRAWAIAQQLDAINRERRDIEAGMQDTALLLLDDFNPADRRTIAVFDPSW 360 GIECLTTDDEGRAWAIAQQLD INRERR IEA MQDTALLLLD F+P D TI++FDPSW Sbjct: 301 GIECLTTDDEGRAWAIAQQLDEINRERRTIEADMQDTALLLLDKFDPQDSTTISIFDPSW 360 Query: 361 HQGVIGIVASRLKDKFYRPTITFAPGDEGFIKGSGRSIAGFHLRDALDLVSKHAPSVMTK 420 HQGVIGIVASRLKDKFYRPTITFA +G+IKGSGRSIAGFHLRDALDLVSKHAP+++ K Sbjct: 361 HQGVIGIVASRLKDKFYRPTITFADAGDGWIKGSGRSIAGFHLRDALDLVSKHAPTLIDK 420 Query: 421 FGGHAMAAGLTIHADAFDAFSQAFEAVGRDWLTQNQLERVIETDGELEDSYYSVEFITLM 480 FGGHAMAAGLTI AD+ D+F+QAFEAVG+DWL++NQLERVIETDG LE +Y++ +FI LM Sbjct: 421 FGGHAMAAGLTIRADSLDSFTQAFEAVGKDWLSRNQLERVIETDGPLEPAYFTTQFIELM 480 Query: 481 DQQVWGQGFAPPVFCDHFRVLSQRILKEKHLKLQLEKGGLKYDAIWFGHTDALPDHAKVA 540 +QVWGQGFAPP+FCD FRV++QRILKE+HLKL LEK G ++DAIWFGH D+LP A+VA Sbjct: 481 AEQVWGQGFAPPLFCDEFRVVNQRILKERHLKLTLEKDGQQFDAIWFGHIDSLPATARVA 540 Query: 541 FRLDANEYNGKTTVQLMVEHAE 562 +RLDANE+NG+T VQL+VEHAE Sbjct: 541 YRLDANEFNGRTRVQLLVEHAE 562 >ref|YP_001352953.1| single-stranded-DNA-specific exonuclease protein [Janthinobacterium sp. Marseille] gb|ABR89550.1| single-stranded-DNA-specific exonuclease protein [Janthinobacterium sp. Marseille] Length = 549 Score = 884 bits (2284), Expect = 0.0, Method: Composition-based stats. Identities = 450/548 (82%), Positives = 499/548 (91%) Query: 17 LIAEGVHPVLARVYAARGLSTARELASELNALIAPSGLLHIEAAASYLADAIAERKKLVI 76 ++ GVHPV+AR+YAARGL +EL SEL ALI P GLL I+ AA++LADAIA +KKLVI Sbjct: 1 MLQSGVHPVMARLYAARGLLDLKELNSELTALIPPPGLLKIDVAATFLADAIAAKKKLVI 60 Query: 77 VADYDCDGATACAVGLRGLRLLGAQVDYIVPNRFEYGYGLTPEIVELTVREKNPDIIVTV 136 VADYDCDGATACAV LRGLR +GA VD+IVPNRFEYGYGLTPEIVEL VREK+PDIIVTV Sbjct: 61 VADYDCDGATACAVALRGLRAMGAIVDFIVPNRFEYGYGLTPEIVELAVREKSPDIIVTV 120 Query: 137 DNGIASIDGVAEAKRRGIDVVVTDHHLPGDALPDARVIVNPNQPQCGFPSKNLAGVGVMF 196 DNGIASIDGVAEA RRGIDVVVTDHHLP D LP ARVIVNPNQP CGFPSKNLAGVGVMF Sbjct: 121 DNGIASIDGVAEANRRGIDVVVTDHHLPADTLPAARVIVNPNQPDCGFPSKNLAGVGVMF 180 Query: 197 YVLLALRAEMRKRGLFDAQTQPRLDSLLDLVALGTVADVVKLDANNRILVAQGLKRMRSG 256 YVLLALRAEMRKRG+FDAQTQP+LD+LLDLVALGTVADVVKLDANNRILVAQGLKRMR+G Sbjct: 181 YVLLALRAEMRKRGIFDAQTQPKLDALLDLVALGTVADVVKLDANNRILVAQGLKRMRAG 240 Query: 257 KMHPGIAALFRAAGREARRATPFDLGFAVGPRLNAAGRLADMSLGIECLTTDDEGRAWAI 316 +MH G+AALFRAAGREARRA+PFDLGFA+GPRLNAAGRL+DMSLGIECLTTDDEGRAWAI Sbjct: 241 RMHAGVAALFRAAGREARRASPFDLGFALGPRLNAAGRLSDMSLGIECLTTDDEGRAWAI 300 Query: 317 AQQLDAINRERRDIEAGMQDTALLLLDDFNPADRRTIAVFDPSWHQGVIGIVASRLKDKF 376 AQQLD INRERR IEA MQDTALLLL++FNP D+ TI+VFDPSWHQGVIGIVASRLKDKF Sbjct: 301 AQQLDEINRERRTIEADMQDTALLLLENFNPQDKTTISVFDPSWHQGVIGIVASRLKDKF 360 Query: 377 YRPTITFAPGDEGFIKGSGRSIAGFHLRDALDLVSKHAPSVMTKFGGHAMAAGLTIHADA 436 YRPTITFA +G+IKGSGRSIAGFHLRDALDLVSKHAP ++ KFGGHAMAAGLTI ADA Sbjct: 361 YRPTITFADAGDGWIKGSGRSIAGFHLRDALDLVSKHAPKLIDKFGGHAMAAGLTIRADA 420 Query: 437 FDAFSQAFEAVGRDWLTQNQLERVIETDGELEDSYYSVEFITLMDQQVWGQGFAPPVFCD 496 DAF++AFEAVG+DWL QNQLERV+ETDG LE +Y++ +FI LM+ QVWGQGFAPP+FCD Sbjct: 421 LDAFTEAFEAVGKDWLDQNQLERVVETDGPLESAYFTTQFIELMEAQVWGQGFAPPLFCD 480 Query: 497 HFRVLSQRILKEKHLKLQLEKGGLKYDAIWFGHTDALPDHAKVAFRLDANEYNGKTTVQL 556 FRV++QRILKE+HLKL LEK G YDAIWFGH D+LP+ A+VA+RLDANE+NG+T VQL Sbjct: 481 EFRVVNQRILKERHLKLTLEKDGASYDAIWFGHIDSLPNRARVAYRLDANEFNGRTRVQL 540 Query: 557 MVEHAEPA 564 +VEHAE A Sbjct: 541 LVEHAEAA 548 >ref|ZP_08273599.1| Single-stranded-DNA-specific exonuclease recJ [Oxalobacteraceae bacterium IMCC9480] gb|EGF32943.1| Single-stranded-DNA-specific exonuclease recJ [Oxalobacteraceae bacterium IMCC9480] Length = 564 Score = 879 bits (2272), Expect = 0.0, Method: Composition-based stats. Identities = 451/564 (79%), Positives = 505/564 (89%) Query: 1 MIRVTTRSYDISQAEQLIAEGVHPVLARVYAARGLSTARELASELNALIAPSGLLHIEAA 60 M R+ TR+ E+LI +G+HPVLAR+Y ARGL AREL+SEL+++IAPSGLLHI+AA Sbjct: 1 MTRLATRAASPRDTERLIQDGIHPVLARLYVARGLLDARELSSELSSMIAPSGLLHIDAA 60 Query: 61 ASYLADAIAERKKLVIVADYDCDGATACAVGLRGLRLLGAQVDYIVPNRFEYGYGLTPEI 120 A +LADAIA +K++VIVADYDCDGATACAVGLRGLR+LGA VD+IVPNRFEYGYGLTPEI Sbjct: 61 AIFLADAIAAKKRMVIVADYDCDGATACAVGLRGLRMLGADVDFIVPNRFEYGYGLTPEI 120 Query: 121 VELTVREKNPDIIVTVDNGIASIDGVAEAKRRGIDVVVTDHHLPGDALPDARVIVNPNQP 180 V L EK+PDIIVTVDNGIASIDGVAEA RRGIDVVVTDHHLP D LP ARVIVNPNQP Sbjct: 121 VALAQAEKSPDIIVTVDNGIASIDGVAEANRRGIDVVVTDHHLPADTLPAARVIVNPNQP 180 Query: 181 QCGFPSKNLAGVGVMFYVLLALRAEMRKRGLFDAQTQPRLDSLLDLVALGTVADVVKLDA 240 +CGFPSKNLAGVGVMFYVLLALRAE+RKRG+FD +QP+LD LLDLVALGTVADVVKLDA Sbjct: 181 ECGFPSKNLAGVGVMFYVLLALRAELRKRGIFDQHSQPKLDVLLDLVALGTVADVVKLDA 240 Query: 241 NNRILVAQGLKRMRSGKMHPGIAALFRAAGREARRATPFDLGFAVGPRLNAAGRLADMSL 300 NNRILVAQGLKRMR+G+MH G+AALFRA+ REAR+A+PFDLGFA+GPRLNAAGRLADMSL Sbjct: 241 NNRILVAQGLKRMRAGRMHAGVAALFRASAREARKASPFDLGFALGPRLNAAGRLADMSL 300 Query: 301 GIECLTTDDEGRAWAIAQQLDAINRERRDIEAGMQDTALLLLDDFNPADRRTIAVFDPSW 360 GIECLTTDDEGRAWAIAQQLDAINRERRDIEA MQDTAL LLD FNP D TI+VFD W Sbjct: 301 GIECLTTDDEGRAWAIAQQLDAINRERRDIEADMQDTALELLDSFNPQDNSTISVFDAGW 360 Query: 361 HQGVIGIVASRLKDKFYRPTITFAPGDEGFIKGSGRSIAGFHLRDALDLVSKHAPSVMTK 420 HQGVIGIVASRLKDKFYRPTITFAP +G+IKGSGRSI GFHLRDALDLVSKHAP+++ K Sbjct: 361 HQGVIGIVASRLKDKFYRPTITFAPASDGWIKGSGRSIPGFHLRDALDLVSKHAPTLIDK 420 Query: 421 FGGHAMAAGLTIHADAFDAFSQAFEAVGRDWLTQNQLERVIETDGELEDSYYSVEFITLM 480 FGGHAMAAGLT+ A+ FDAF+ AFEAVGR WLTQNQLERV+E DG LED++++ +FI L+ Sbjct: 421 FGGHAMAAGLTLRAENFDAFAAAFEAVGRSWLTQNQLERVLENDGSLEDAFFTTQFIDLL 480 Query: 481 DQQVWGQGFAPPVFCDHFRVLSQRILKEKHLKLQLEKGGLKYDAIWFGHTDALPDHAKVA 540 D QVWGQGFAPPVFCD FRV+SQRILKE+HLKLQLE+ G ++DAIWFGHTD L A+VA Sbjct: 481 DAQVWGQGFAPPVFCDEFRVISQRILKERHLKLQLERNGQRFDAIWFGHTDDLGGRARVA 540 Query: 541 FRLDANEYNGKTTVQLMVEHAEPA 564 +RLDANEYNG T VQLMVE+AE A Sbjct: 541 YRLDANEYNGVTRVQLMVEYAEMA 564 >ref|YP_004753761.1| single-stranded-DNA-specific exonuclease recJ [Collimonas fungivorans Ter331] gb|AEK62938.1| Single-stranded-DNA-specific exonuclease recJ [Collimonas fungivorans Ter331] Length = 564 Score = 879 bits (2271), Expect = 0.0, Method: Composition-based stats. Identities = 473/562 (84%), Positives = 509/562 (90%) Query: 1 MIRVTTRSYDISQAEQLIAEGVHPVLARVYAARGLSTARELASELNALIAPSGLLHIEAA 60 M R+ TR Y +E+L G+HPVLARVY ARGL A+EL SELNALI PSGLLHI+AA Sbjct: 1 MTRIVTRPYSFRDSERLCQSGIHPVLARVYTARGLLDAKELESELNALIPPSGLLHIDAA 60 Query: 61 ASYLADAIAERKKLVIVADYDCDGATACAVGLRGLRLLGAQVDYIVPNRFEYGYGLTPEI 120 A +LADAIA +KK+VIVADYDCDGATACAVGLRGLRLLGA +D+IVPNRFEYGYGLTPEI Sbjct: 61 AIFLADAIAAKKKMVIVADYDCDGATACAVGLRGLRLLGANIDFIVPNRFEYGYGLTPEI 120 Query: 121 VELTVREKNPDIIVTVDNGIASIDGVAEAKRRGIDVVVTDHHLPGDALPDARVIVNPNQP 180 VELT REK+PDIIVTVDNGIASIDGVAEA RRGI+VVVTDHHLP D LP ARVIVNPNQP Sbjct: 121 VELTAREKSPDIIVTVDNGIASIDGVAEANRRGIEVVVTDHHLPADTLPAARVIVNPNQP 180 Query: 181 QCGFPSKNLAGVGVMFYVLLALRAEMRKRGLFDAQTQPRLDSLLDLVALGTVADVVKLDA 240 +CGFPSKNLAGVGVMFYVLLALRAE+R+RG+FDAQ+QP+LD LLDLVALGTVADVVKLDA Sbjct: 181 ECGFPSKNLAGVGVMFYVLLALRAELRRRGVFDAQSQPKLDVLLDLVALGTVADVVKLDA 240 Query: 241 NNRILVAQGLKRMRSGKMHPGIAALFRAAGREARRATPFDLGFAVGPRLNAAGRLADMSL 300 NNRILVAQGLKRMR+G+MH GIAALFRAAGREARRATPFDLGFA+GPRLNAAGRLADM+L Sbjct: 241 NNRILVAQGLKRMRAGRMHAGIAALFRAAGREARRATPFDLGFALGPRLNAAGRLADMAL 300 Query: 301 GIECLTTDDEGRAWAIAQQLDAINRERRDIEAGMQDTALLLLDDFNPADRRTIAVFDPSW 360 GIECLTTDDEGRAWAIAQQLDAINRERRDIEAGMQDTAL LLDDF P D TI+VFD SW Sbjct: 301 GIECLTTDDEGRAWAIAQQLDAINRERRDIEAGMQDTALALLDDFKPQDSTTISVFDASW 360 Query: 361 HQGVIGIVASRLKDKFYRPTITFAPGDEGFIKGSGRSIAGFHLRDALDLVSKHAPSVMTK 420 HQGVIGIVASRLKDKFYRPTITFAPG EG IKGSGRSI GFHLRDALDLVSKHAPS++ K Sbjct: 361 HQGVIGIVASRLKDKFYRPTITFAPGGEGLIKGSGRSIPGFHLRDALDLVSKHAPSLIQK 420 Query: 421 FGGHAMAAGLTIHADAFDAFSQAFEAVGRDWLTQNQLERVIETDGELEDSYYSVEFITLM 480 FGGHAMAAGLTI ADAFDAF+ AFE VGR+WL Q+QLERVIETDG LED+YY+ +FI LM Sbjct: 421 FGGHAMAAGLTIRADAFDAFAAAFEKVGREWLGQSQLERVIETDGPLEDAYYTTQFIELM 480 Query: 481 DQQVWGQGFAPPVFCDHFRVLSQRILKEKHLKLQLEKGGLKYDAIWFGHTDALPDHAKVA 540 D QVWGQGFAPP+FCD FRV+SQRILKEKHLKL LE+ G +YDAIWFGHTD L AKVA Sbjct: 481 DGQVWGQGFAPPLFCDEFRVVSQRILKEKHLKLLLERNGTRYDAIWFGHTDELGSKAKVA 540 Query: 541 FRLDANEYNGKTTVQLMVEHAE 562 FRLDANEYNG T VQLMVEHAE Sbjct: 541 FRLDANEYNGVTKVQLMVEHAE 562