BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3334.p (343 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776183.1| signal peptide protein [Herbaspirillum serop... 520 e-145 ref|YP_004753760.1| regulatory protein [Collimonas fungivorans T... 323 3e-86 ref|YP_001100484.1| hypothetical protein HEAR2226 [Herminiimonas... 298 8e-79 ref|YP_001352954.1| hypothetical protein mma_1264 [Janthinobacte... 283 2e-74 ref|ZP_08273598.1| Regulatory protein, RpfE type [Oxalobacterace... 281 1e-73 >ref|YP_003776183.1| signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ64275.1| signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 343 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 298/343 (86%), Positives = 312/343 (90%) Query: 1 MNQLDILIPFALPPAELARDLLRQSQAPALAMLLGRGKAAPRQAHDPFSRALPHEHWLAR 60 MNQLD+LIPFALPPAELARDLLRQ QAPALAMLLGRG+AAPRQ+HDPFSRALPHEHWLA+ Sbjct: 1 MNQLDLLIPFALPPAELARDLLRQCQAPALAMLLGRGRAAPRQSHDPFSRALPHEHWLAQ 60 Query: 61 RFGLPPAPQDSSPAAASALMQRLGHTPAAGHWFVLHPAHIHVARDHLVLTDIGQLQLEED 120 RFGLP QD SPAAA+ALMQRLGH P GHWFVLHPAHIHVARDHLVLTDIGQLQLEE Sbjct: 61 RFGLPATAQDCSPAAATALMQRLGHAPDGGHWFVLHPAHIHVARDHLVLTDIGQLQLEEA 120 Query: 121 ESRRLFAAALPLFTEIGHELVYGDARTWFIRADAWAGLRTSTPSAASGRNVDIWMPEGPG 180 ESRRLF AALPLFTEIGH LVYGDARTWFIRADAWAGLRTSTPSAASGRNVDIWMPEGPG Sbjct: 121 ESRRLFDAALPLFTEIGHALVYGDARTWFIRADAWAGLRTSTPSAASGRNVDIWMPEGPG 180 Query: 181 ELAWRKLQNEVQMQWFAESLNEQREMRGQKAINSIWIWGGADAGVRAGDTYAERFGLRGW 240 ELAWRKLQNEVQMQWFAE+LNEQREMRGQKAINSIWIWGGADAGV A YA FGLRGW Sbjct: 181 ELAWRKLQNEVQMQWFAEALNEQREMRGQKAINSIWIWGGADAGVLAQQRYAASFGLRGW 240 Query: 241 LRAFGEERADGGAAQVAQGSGHRLLVLDALAEAALAEEWGLWLQHLEHLDRDWLAPLLVS 300 +RAFG+E Q+ Q SGHRLLVLDALAEAALAEEWGLWLQHLEHLDRDWLAPLLVS Sbjct: 241 MRAFGDEHPASDPTQLGQSSGHRLLVLDALAEAALAEEWGLWLQHLEHLDRDWLAPLLVS 300 Query: 301 LKASTLESLNLILTGADRSQEVAVTRGALRRFWRKASLSGLSA 343 L+A TLE+L+L+LTGADRS V VTRGALRRFWRK SL+GLSA Sbjct: 301 LRAGTLEALHLVLTGADRSIAVDVTRGALRRFWRKPSLAGLSA 343 >ref|YP_004753760.1| regulatory protein [Collimonas fungivorans Ter331] gb|AEK62937.1| Regulatory protein [Collimonas fungivorans Ter331] Length = 406 Score = 323 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 186/355 (52%), Positives = 238/355 (67%), Gaps = 16/355 (4%) Query: 1 MNQLDILIPFALPPAELARDLLRQSQAPALAMLLGRGKAAPR-QAHDPFSRALPHEHWLA 59 M+ LDIL+PF LPP ELARDLLR+ + PALA L+ R K PR QA D F+RALPHE WL Sbjct: 44 MSHLDILLPFGLPPPELARDLLRELKLPALATLMARAKTGPRRQAFDDFARALPHEMWLT 103 Query: 60 RRFGLPP----AP---QDSSPAAASALMQRLGHTPAAGHWFVLHPAHIHVARDHLVLTDI 112 +F LP AP +SPA A A M+ +G + G WF+LHPAHIH+ARDHLVLTDI Sbjct: 104 SQFSLPAFEPVAPGQDNQNSPALACAAMRAMGLSAEKGAWFMLHPAHIHIARDHLVLTDI 163 Query: 113 GQLQLEEDESRRLFAAALPLFTEIGHELVYGDARTWFIRADAWAGLRTSTPSAASGRNVD 172 Q+ L + ESR LF AALPLF E+G ELVYGDA TWF+RAD W GL +STP A G N+D Sbjct: 164 RQIGLSDAESRELFDAALPLFAEVGRELVYGDAGTWFLRADDWQGLLSSTPDATCGHNID 223 Query: 173 IWMPEGPGELAWRKLQNEVQMQWFAESLNEQREMRGQKAINSIWIWGGADA-----GVRA 227 IWMP+G G+ AWRKLQNEVQM WFA LNE+REM+G++ +NS+W+WGGA A G R Sbjct: 224 IWMPKGSGDQAWRKLQNEVQMLWFAHPLNERREMQGRQTVNSLWLWGGAVAQPCVPGQRE 283 Query: 228 GDTYAERF-GLRGWLRAFGEERADGGAAQVAQGSGHRLLVLDALAEAALAEEWGLWLQHL 286 + F GL + +A G + +A GH LL L L + AL EW WL+ L Sbjct: 284 VFNLPDGFAGLGQYAKA--AYAGIGISEVIAARPGHGLLTLSQLIQPALTGEWSDWLRQL 341 Query: 287 EHLDRDWLAPLLVSLKASTLESLNLILTGADRSQEVAVTRGALRRFWRKASLSGL 341 + L+ APLL +++ L+SL+LI+T + + E++ TR +L++FW K +L+GL Sbjct: 342 QTLESTCFAPLLQAMQQRRLDSLSLIVTDSGHTLEMSTTRLSLKKFWLKPALTGL 396 >ref|YP_001100484.1| hypothetical protein HEAR2226 [Herminiimonas arsenicoxydans] emb|CAL62361.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 350 Score = 298 bits (763), Expect = 8e-79, Method: Composition-based stats. Identities = 171/350 (48%), Positives = 218/350 (62%), Gaps = 7/350 (2%) Query: 1 MNQLDILIPFALPPAELARDLLRQSQAPALAMLLGRGKAAPRQAHDPFSRALPHEHWLAR 60 M QL++L+PFA+PPAELARDLLR+ + PALA LL + RQ D FSR LPHEHWLA+ Sbjct: 1 MTQLELLLPFAMPPAELARDLLRELKMPALATLLAHASVSGRQVSDGFSRTLPHEHWLAQ 60 Query: 61 RFGLP-PAPQDSSPAAASALMQRLGHTPAAGHWFVLHPAHIHVARDHLVLTDIGQLQLEE 119 +FGL A SSPA A + MQ + G WF+L P H+H+ARDHLVLTD QL L E Sbjct: 61 QFGLTGQADNSSSPALAISAMQTMALPAEPGTWFILQPVHLHIARDHLVLTDPRQLHLSE 120 Query: 120 DESRRLFAAALPLFTEIGHELVYGDARTWFIRADAWAGLRTSTPSAASGRNVDIWMPEGP 179 + R LF LF E G L YGDA+TWF+RAD WA L+TSTP AA G N+DIWMP+GP Sbjct: 121 ADGRALFEITHTLFEESGKTLRYGDAQTWFLRADDWAALQTSTPDAACGHNIDIWMPKGP 180 Query: 180 GELAWRKLQNEVQMQWFAESLNEQREMRGQKAINSIWIWGGADAGV-RAGDTYAERFGLR 238 E WR+LQNE+QM W A ++NEQRE RG K +NSIW+WGGA + A E F Sbjct: 181 NERDWRRLQNEIQMHWHAHAINEQREARGLKPVNSIWLWGGASSTTATAPAKIEETFTFP 240 Query: 239 GWLRAF----GEERADGGAAQVAQGS-GHRLLVLDALAEAALAEEWGLWLQHLEHLDRDW 293 G + F G + A AA + + H LL+LD L E ALA +W WL + ++ W Sbjct: 241 GAHKPFAAQAGRQIAITSAADMIKARPQHGLLLLDQLIEPALAGDWSEWLTRFQAMEAAW 300 Query: 294 LAPLLVSLKASTLESLNLILTGADRSQEVAVTRGALRRFWRKASLSGLSA 343 PLL ++K L+ L + L+ A+ + +LR+FW K +L+ L A Sbjct: 301 FVPLLDAIKNGQLDKLTITLSHNTACSSFALGKSSLRKFWCKPTLARLVA 350 >ref|YP_001352954.1| hypothetical protein mma_1264 [Janthinobacterium sp. Marseille] gb|ABR90015.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 348 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 162/333 (48%), Positives = 212/333 (63%), Gaps = 7/333 (2%) Query: 16 ELARDLLRQSQAPALAMLLGRGKAAPRQAHDPFSRALPHEHWLARRFGLPPAPQDSSPAA 75 E+ARDLLR+ + PALA LLGRG QA+D F+RALPHE WLAR+ GL DSSP+A Sbjct: 16 EMARDLLRELKTPALATLLGRGDLTEHQAYDGFARALPHETWLARQSGLA-VNGDSSPSA 74 Query: 76 ASALMQRLGHTPAAGHWFVLHPAHIHVARDHLVLTDIGQLQLEEDESRRLFAAALPLFTE 135 A M G A G WF+L P H+H+ARDHLVLTD QLQL E+++R LF PLF E Sbjct: 75 ARNAMDAFGLPAADGVWFILQPVHLHIARDHLVLTDTQQLQLSEEDARSLFEVVQPLFAE 134 Query: 136 IGHELVYGDARTWFIRADAWAGLRTSTPSAASGRNVDIWMPEGPGELAWRKLQNEVQMQW 195 G L+YGDA TWF+RAD L+TSTPSAA G N+DIWMP+G E WR+LQNEVQM W Sbjct: 135 TGQALLYGDANTWFLRADELHALQTSTPSAACGHNIDIWMPKGEKERNWRRLQNEVQMHW 194 Query: 196 FAESLNEQREMRGQKAINSIWIWGG-ADAGVRAGDTYAERFGL---RGWLRAFG-EERAD 250 N+ REMRG K +NS+W+WGG +++ + + E F L R L G RA Sbjct: 195 HDHPTNDAREMRGLKPVNSVWLWGGTSNSNAAPANKFEETFSLSSGRNPLMVAGLRHRAV 254 Query: 251 GGAAQ-VAQGSGHRLLVLDALAEAALAEEWGLWLQHLEHLDRDWLAPLLVSLKASTLESL 309 AA+ +A H LL LD+L ++A +W WL L+ ++ W APLL ++K + L+ Sbjct: 255 SSAAELLATHPQHGLLTLDSLIAPSMAGDWSEWLMRLQAMEEIWFAPLLEAIKNNQLDQF 314 Query: 310 NLILTGADRSQEVAVTRGALRRFWRKASLSGLS 342 ++ L+ + ++ +LR+FWRKASLS L+ Sbjct: 315 SITLSNNIALSTITSSKSSLRKFWRKASLSRLA 347 >ref|ZP_08273598.1| Regulatory protein, RpfE type [Oxalobacteraceae bacterium IMCC9480] gb|EGF32942.1| Regulatory protein, RpfE type [Oxalobacteraceae bacterium IMCC9480] Length = 330 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 164/328 (50%), Positives = 199/328 (60%), Gaps = 3/328 (0%) Query: 17 LARDLLRQSQAPALAMLLGRGKAAPRQAHDPFSRALPHEHWLARRFGLPP-APQDSSPAA 75 + DLLR + P+LA+LL R K P AHD F+ ALPHE WLA FGL P DSSP Sbjct: 1 MGPDLLRAMETPSLAVLLARSKPEPAVAHDAFAHALPHESWLAAAFGLSPDKTTDSSPPL 60 Query: 76 ASALMQRLGHTPAAGHWFVLHPAHIHVARDHLVLTDIGQLQLEEDESRRLFAAALPLFTE 135 A M R G P +G WFVL+P HIH+ARDHLVLTD +L L + +SR LFA A PLF E Sbjct: 61 ALRAMHRRGFAPESGVWFVLNPVHIHIARDHLVLTDPRRLALADADSRTLFALAAPLFEE 120 Query: 136 IGHELVYGDARTWFIRADAWAGLRTSTPSAASGRNVDIWMPEGPGELAWRKLQNEVQMQW 195 IG +LVYGDA TWF+RAD WA ++T+TP AA G N+DIWMP+GP E WRK+QNE+QM W Sbjct: 121 IGQQLVYGDAATWFLRADDWAAMQTATPDAACGHNIDIWMPKGPAERDWRKVQNEIQMHW 180 Query: 196 FAESLNEQREMRGQKAINSIWIWGGADAGVRAGD-TYAERFGLRGWLRAFGEERADGGAA 254 ++N+ RE G +NS+W+WG A A D +Y + F L W + A Sbjct: 181 HDCAVNQSREQHGLDPVNSLWLWGATRAEQDARDSSYTDVFNLANWRGEAVRHHDNATIA 240 Query: 255 QV-AQGSGHRLLVLDALAEAALAEEWGLWLQHLEHLDRDWLAPLLVSLKASTLESLNLIL 313 V A H LL+LD L E AL E+ WL L L+ W APLL +LK L S LIL Sbjct: 241 DVLAAKPAHGLLLLDMLIEPALGEDLSEWLMRLNALEAPWFAPLLQALKDGALGSCRLIL 300 Query: 314 TGADRSQEVAVTRGALRRFWRKASLSGL 341 T +TR LR+FW K SL GL Sbjct: 301 THGSLVTGHLITRTTLRKFWLKPSLKGL 328