BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3324.p (284 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776174.1| 3-deoxy-D-manno-octulosonic acid (KDO) 8-pho... 525 e-147 ref|ZP_08273588.1| 2-Keto-3-deoxy-D-manno-octulosonate-8-phospha... 476 e-132 ref|YP_002005197.1| 2-dehydro-3-deoxyphosphooctonate aldolase [C... 471 e-131 ref|YP_583208.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Cupr... 468 e-130 ref|YP_004684968.1| 2-dehydro-3-deoxyphosphooctonate aldolase Kd... 468 e-130 >ref|YP_003776174.1| 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Herbaspirillum seropedicae SmR1] gb|ADJ64266.1| 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase protein [Herbaspirillum seropedicae SmR1] Length = 284 Score = 525 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 274/279 (98%), Positives = 277/279 (99%) Query: 1 MKLCGFDVGLEHPFFLIAGTCVIESEQMALDTAGTLKEITTQLGIPFIYKSSFDKANRSS 60 MKLCGFDVGL+HPFFLIAGTCVIESEQMALDTAGTLKEIT +LGIPFIYKSSFDKANRSS Sbjct: 1 MKLCGFDVGLDHPFFLIAGTCVIESEQMALDTAGTLKEITAELGIPFIYKSSFDKANRSS 60 Query: 61 GTSFRGLGMEKGLEILAKVKKEIGVPVLTDIHEIDEIKPVAAVVDVLQTPAFLCRQTDFI 120 G+SFRGLGMEKGLEILAKVKKEIGVPVLTDIHEIDEIKPVAAVVDVLQTPAFLCRQTDFI Sbjct: 61 GSSFRGLGMEKGLEILAKVKKEIGVPVLTDIHEIDEIKPVAAVVDVLQTPAFLCRQTDFI 120 Query: 121 RACAQSGKPVNIKKGQFLAPHDMVNVIDKARAAAKEAGLPTDQFMACERGASFGYNNLVS 180 RACAQSGKPVNIKKGQFLAPHDMVNVIDKARAAAKEAGLPTDQFMACERG SFGYNNLVS Sbjct: 121 RACAQSGKPVNIKKGQFLAPHDMVNVIDKARAAAKEAGLPTDQFMACERGVSFGYNNLVS 180 Query: 181 DMRSLAIMRETGAPVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAIAVGISGVFMETH 240 DMRSLAIMRETGAPVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAIAVGISGVFMETH Sbjct: 181 DMRSLAIMRETGAPVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAIAVGISGVFMETH 240 Query: 241 PNPAEAKSDGPNAVPLARMKDLLGTMIDLDRIVKKAGFL 279 PNPAEAKSDGPNAVPLARMKDLLGTMIDLDRIVKKAGFL Sbjct: 241 PNPAEAKSDGPNAVPLARMKDLLGTMIDLDRIVKKAGFL 279 >ref|ZP_08273588.1| 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32932.1| 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase [Oxalobacteraceae bacterium IMCC9480] Length = 284 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 243/281 (86%), Positives = 261/281 (92%) Query: 1 MKLCGFDVGLEHPFFLIAGTCVIESEQMALDTAGTLKEITTQLGIPFIYKSSFDKANRSS 60 MKLCGFD+GL+ PFFLIAG CVIES QMA DTAG LKEIT LGIPFIYKSSFDKANRSS Sbjct: 1 MKLCGFDIGLDQPFFLIAGPCVIESRQMAFDTAGQLKEITAALGIPFIYKSSFDKANRSS 60 Query: 61 GTSFRGLGMEKGLEILAKVKKEIGVPVLTDIHEIDEIKPVAAVVDVLQTPAFLCRQTDFI 120 GTSFRGLGM+KGLEILA VK+E+GVPVLTDIH I+EIKPV+AVVDVLQTPAFLCRQTDFI Sbjct: 61 GTSFRGLGMDKGLEILADVKRELGVPVLTDIHAIEEIKPVSAVVDVLQTPAFLCRQTDFI 120 Query: 121 RACAQSGKPVNIKKGQFLAPHDMVNVIDKARAAAKEAGLPTDQFMACERGASFGYNNLVS 180 ACAQSG+PVNIKKGQFLAPHDMVNVI+KARAAAKEAGL D FMACERG SFGYNNLVS Sbjct: 121 HACAQSGRPVNIKKGQFLAPHDMVNVINKARAAAKEAGLAEDNFMACERGVSFGYNNLVS 180 Query: 181 DMRSLAIMRETGAPVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAIAVGISGVFMETH 240 DMRSLAIMRETG P+VFDATHSVQLPGGQG+SSGGQREFVPVLARAA+AVGISG+FMETH Sbjct: 181 DMRSLAIMRETGCPIVFDATHSVQLPGGQGSSSGGQREFVPVLARAAVAVGISGLFMETH 240 Query: 241 PNPAEAKSDGPNAVPLARMKDLLGTMIDLDRIVKKAGFLTT 281 PNPAEA SDGPNAVPL RM++LL T+I+LDR+VKK GFL T Sbjct: 241 PNPAEAMSDGPNAVPLGRMRELLSTLIELDRVVKKNGFLET 281 >ref|YP_002005197.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Cupriavidus taiwanensis LMG 19424] sp|B3R497|KDSA_CUPTR RecName: Full=2-dehydro-3-deoxyphosphooctonate aldolase; AltName: Full=3-deoxy-D-manno-octulosonic acid 8-phosphate synthase; AltName: Full=KDO-8-phosphate synthase; Short=KDO 8-P synthase; Short=KDOPS; AltName: Full=Phospho-2-dehydro-3-deoxyoctonate aldolase emb|CAQ69130.1| 3-deoxy-D-manno-octulosonic acid 8-P synthetase [Cupriavidus taiwanensis LMG 19424] Length = 289 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 243/279 (87%), Positives = 262/279 (93%) Query: 1 MKLCGFDVGLEHPFFLIAGTCVIESEQMALDTAGTLKEITTQLGIPFIYKSSFDKANRSS 60 MKLCGF+VGL+ PFFLIAG CVIESEQMALDTAG LK ITT+LGIPFIYKSSFDKANRSS Sbjct: 1 MKLCGFEVGLDKPFFLIAGPCVIESEQMALDTAGELKAITTELGIPFIYKSSFDKANRSS 60 Query: 61 GTSFRGLGMEKGLEILAKVKKEIGVPVLTDIHEIDEIKPVAAVVDVLQTPAFLCRQTDFI 120 G SFRGLGMEKGLEILA VK+EIGVPVLTDIHEIDEIKPVAAVVDVLQTPAFLCRQTDFI Sbjct: 61 GKSFRGLGMEKGLEILAHVKREIGVPVLTDIHEIDEIKPVAAVVDVLQTPAFLCRQTDFI 120 Query: 121 RACAQSGKPVNIKKGQFLAPHDMVNVIDKARAAAKEAGLPTDQFMACERGASFGYNNLVS 180 RACAQSGKPVNIKKGQFLAPHDM NVIDKAR AA+EAGLP D FMACERG SFGYNNLVS Sbjct: 121 RACAQSGKPVNIKKGQFLAPHDMKNVIDKARDAAREAGLPDDVFMACERGVSFGYNNLVS 180 Query: 181 DMRSLAIMRETGAPVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAIAVGISGVFMETH 240 DMRSLAIMRETGAPVVFDATHSVQLPGGQGTSSGGQREFVPVL+RAA+A G++G+FMETH Sbjct: 181 DMRSLAIMRETGAPVVFDATHSVQLPGGQGTSSGGQREFVPVLSRAAVATGVAGLFMETH 240 Query: 241 PNPAEAKSDGPNAVPLARMKDLLGTMIDLDRIVKKAGFL 279 P+P++A SDGPNAVPL+RMK+LL + +LD +VK+AGFL Sbjct: 241 PDPSKAMSDGPNAVPLSRMKELLTVLKELDTLVKRAGFL 279 >ref|YP_583208.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Cupriavidus metallidurans CH34] gb|ABF07939.1| 3-deoxy-D-manno-octulosonate 8-phosphate synthase [Cupriavidus metallidurans CH34] Length = 289 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 243/279 (87%), Positives = 261/279 (93%) Query: 1 MKLCGFDVGLEHPFFLIAGTCVIESEQMALDTAGTLKEITTQLGIPFIYKSSFDKANRSS 60 MKLCGFDVGL+ PFFLIAG CVIESEQMALDTAG LK IT +LGIPFIYKSSFDKANRSS Sbjct: 1 MKLCGFDVGLDKPFFLIAGPCVIESEQMALDTAGELKAITGELGIPFIYKSSFDKANRSS 60 Query: 61 GTSFRGLGMEKGLEILAKVKKEIGVPVLTDIHEIDEIKPVAAVVDVLQTPAFLCRQTDFI 120 G SFRGLGMEKGLEILA VK++IGVPVLTDIHEIDEIKPVAAVVDVLQTPAFLCRQTDFI Sbjct: 61 GKSFRGLGMEKGLEILATVKRQIGVPVLTDIHEIDEIKPVAAVVDVLQTPAFLCRQTDFI 120 Query: 121 RACAQSGKPVNIKKGQFLAPHDMVNVIDKARAAAKEAGLPTDQFMACERGASFGYNNLVS 180 RACAQSGKPVNIKKGQFLAPHDM NVIDKAR AA+EAGLP D FMACERG SFGYNNLVS Sbjct: 121 RACAQSGKPVNIKKGQFLAPHDMKNVIDKARDAAREAGLPDDVFMACERGVSFGYNNLVS 180 Query: 181 DMRSLAIMRETGAPVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAIAVGISGVFMETH 240 DMRSLAIMRETGAPVVFDATHSVQLPGGQGTSSGGQREFVPVL+RAA+A G++G+FMETH Sbjct: 181 DMRSLAIMRETGAPVVFDATHSVQLPGGQGTSSGGQREFVPVLSRAAVATGVAGLFMETH 240 Query: 241 PNPAEAKSDGPNAVPLARMKDLLGTMIDLDRIVKKAGFL 279 P+P++A SDGPNAVPL+RMK+LL + DLD +VK+AGFL Sbjct: 241 PDPSKAMSDGPNAVPLSRMKELLTVLRDLDGMVKRAGFL 279 >ref|YP_004684968.1| 2-dehydro-3-deoxyphosphooctonate aldolase KdsA [Cupriavidus necator N-1] gb|AEI76487.1| 2-dehydro-3-deoxyphosphooctonate aldolase KdsA [Cupriavidus necator N-1] Length = 289 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 242/279 (86%), Positives = 260/279 (93%) Query: 1 MKLCGFDVGLEHPFFLIAGTCVIESEQMALDTAGTLKEITTQLGIPFIYKSSFDKANRSS 60 MKLCGF+ GL+ PFFLIAG CVIESEQMALDTAG LK IT +LGIPFIYKSSFDKANRSS Sbjct: 1 MKLCGFEAGLDKPFFLIAGPCVIESEQMALDTAGELKAITAELGIPFIYKSSFDKANRSS 60 Query: 61 GTSFRGLGMEKGLEILAKVKKEIGVPVLTDIHEIDEIKPVAAVVDVLQTPAFLCRQTDFI 120 G SFRGLGMEKGLEILA VK+EIGVPVLTDIHEIDEIKPVAAVVDVLQTPAFLCRQTDFI Sbjct: 61 GKSFRGLGMEKGLEILATVKREIGVPVLTDIHEIDEIKPVAAVVDVLQTPAFLCRQTDFI 120 Query: 121 RACAQSGKPVNIKKGQFLAPHDMVNVIDKARAAAKEAGLPTDQFMACERGASFGYNNLVS 180 RACAQSGKPVNIKKGQFLAPHDM NVIDKAR AA+EAGLP D FMACERG SFGYNNLVS Sbjct: 121 RACAQSGKPVNIKKGQFLAPHDMKNVIDKARDAAREAGLPDDVFMACERGVSFGYNNLVS 180 Query: 181 DMRSLAIMRETGAPVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAIAVGISGVFMETH 240 DMRSLAIMRETGAPVVFDATHSVQLPGGQGTSSGGQREFVPVL+RAA+A G++G+FMETH Sbjct: 181 DMRSLAIMRETGAPVVFDATHSVQLPGGQGTSSGGQREFVPVLSRAAVATGVAGLFMETH 240 Query: 241 PNPAEAKSDGPNAVPLARMKDLLGTMIDLDRIVKKAGFL 279 P+P++A SDGPNAVPL+RMK+LL + DLD +VK+AGFL Sbjct: 241 PDPSKAMSDGPNAVPLSRMKELLAVLKDLDTLVKRAGFL 279