BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3319.p (262 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776169.1| response regulator containing a CheY-like re... 380 e-103 ref|YP_001353142.1| LuxR family DNA-binding response regulator [... 309 2e-82 ref|YP_001100139.1| LuxR family transcriptional regulator [Hermi... 305 3e-81 ref|ZP_08273607.1| BarA-associated response regulator UvrY [Oxal... 300 1e-79 ref|ZP_08503346.1| Response regulator receiver, LuxR family [Met... 263 3e-68 >ref|YP_003776169.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ64261.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 203/217 (93%), Positives = 214/217 (98%) Query: 46 MSKKSTAAIKVLIADDHAIVREGLRQICAGSKDIVVAGNAANGLEAIKLAREGNGDVMLL 105 MSKK TAAIKVLIADDHAIVREGLRQICAGSKDI+VAGNAANGLEAIKLAREGNGDV+LL Sbjct: 1 MSKKVTAAIKVLIADDHAIVREGLRQICAGSKDIMVAGNAANGLEAIKLAREGNGDVLLL 60 Query: 106 DIVLPDRSGIDILKQIRKEQPDLPVLILSIHREDQYAIRSLKAGAAGFLNKQASPSELLA 165 DIVLPDR+GIDILKQIRKEQP+LPVLILSIHREDQYAIR+LKAGAAGFLNKQA+P+ELLA Sbjct: 61 DIVLPDRNGIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQAAPAELLA 120 Query: 166 AIRQAAAGRKYVSPSLAQELANQIGFDHDTPLHETLSDREYQTMVMIASGKTVSDIASEL 225 AIRQAA+GRKYVSPSLAQELANQIGFDH+TPLHETLSDREYQTMVMIASGKTVSDIA+EL Sbjct: 121 AIRQAASGRKYVSPSLAQELANQIGFDHETPLHETLSDREYQTMVMIASGKTVSDIAAEL 180 Query: 226 LLSVKTISMYRSRVLAKMKMRHNAELTHYALKNNLVE 262 LSVKTISMYRSRVL+KMKMRHNAELTHYALKN LVE Sbjct: 181 TLSVKTISMYRSRVLSKMKMRHNAELTHYALKNALVE 217 >ref|YP_001353142.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] gb|ABR89925.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp. Marseille] Length = 215 Score = 309 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 161/209 (77%), Positives = 192/209 (91%) Query: 54 IKVLIADDHAIVREGLRQICAGSKDIVVAGNAANGLEAIKLAREGNGDVMLLDIVLPDRS 113 IKVLIADDHAIVREGL+QI A +KDIVVAG+A NG+EAIKL+REG V+LLDI +PDRS Sbjct: 7 IKVLIADDHAIVREGLKQILADTKDIVVAGHAENGIEAIKLSREGACQVLLLDISMPDRS 66 Query: 114 GIDILKQIRKEQPDLPVLILSIHREDQYAIRSLKAGAAGFLNKQASPSELLAAIRQAAAG 173 GI++LKQ++KE P + VL+LS+HREDQYAIRSLKAGA+G+LNKQ++P+EL+ AIRQ AAG Sbjct: 67 GIEVLKQVKKESPKIAVLMLSMHREDQYAIRSLKAGASGYLNKQSAPAELVNAIRQVAAG 126 Query: 174 RKYVSPSLAQELANQIGFDHDTPLHETLSDREYQTMVMIASGKTVSDIASELLLSVKTIS 233 RKY+S +LAQELANQI DH+TPLHETLSDREYQT+ MIASGKTVSDIA+EL+LSVKTIS Sbjct: 127 RKYISAALAQELANQISDDHETPLHETLSDREYQTLTMIASGKTVSDIANELVLSVKTIS 186 Query: 234 MYRSRVLAKMKMRHNAELTHYALKNNLVE 262 MYRSR+L KMK+RHNAELTHYA+KN+LV+ Sbjct: 187 MYRSRLLQKMKLRHNAELTHYAIKNHLVD 215 >ref|YP_001100139.1| LuxR family transcriptional regulator [Herminiimonas arsenicoxydans] emb|CAL62015.1| Response regulator receiver, LuxR family [Herminiimonas arsenicoxydans] Length = 215 Score = 305 bits (782), Expect = 3e-81, Method: Composition-based stats. Identities = 160/210 (76%), Positives = 192/210 (91%) Query: 53 AIKVLIADDHAIVREGLRQICAGSKDIVVAGNAANGLEAIKLAREGNGDVMLLDIVLPDR 112 AIKVLIADDHAIVREGL+QI A ++DIVVAG+A NG EAI+L+REG +V+LLDI +PDR Sbjct: 6 AIKVLIADDHAIVREGLKQILADTRDIVVAGHAENGSEAIRLSREGLCNVLLLDISMPDR 65 Query: 113 SGIDILKQIRKEQPDLPVLILSIHREDQYAIRSLKAGAAGFLNKQASPSELLAAIRQAAA 172 SGI++LKQ+RKE P + +L+LS+HREDQYAIRSLKAGAAG+LNKQ++P+EL+ AIRQ AA Sbjct: 66 SGIEVLKQVRKESPKIAILMLSMHREDQYAIRSLKAGAAGYLNKQSAPAELVTAIRQVAA 125 Query: 173 GRKYVSPSLAQELANQIGFDHDTPLHETLSDREYQTMVMIASGKTVSDIASELLLSVKTI 232 GRKY+S LAQELANQI +H+TPLHETLSDREYQT+ MIASGKTVSDIA+EL+LSVKTI Sbjct: 126 GRKYISAELAQELANQINDNHETPLHETLSDREYQTLTMIASGKTVSDIAAELVLSVKTI 185 Query: 233 SMYRSRVLAKMKMRHNAELTHYALKNNLVE 262 SMYRSR+L KMK+RHNAELTHYA+KN+LV+ Sbjct: 186 SMYRSRLLQKMKLRHNAELTHYAIKNHLVD 215 >ref|ZP_08273607.1| BarA-associated response regulator UvrY [Oxalobacteraceae bacterium IMCC9480] gb|EGF32926.1| BarA-associated response regulator UvrY [Oxalobacteraceae bacterium IMCC9480] Length = 215 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 161/217 (74%), Positives = 192/217 (88%), Gaps = 2/217 (0%) Query: 46 MSKKSTAAIKVLIADDHAIVREGLRQICAGSKDIVVAGNAANGLEAIKLAREGNGDVMLL 105 M+KK T I+VLIADDHAIVREGL+QI A +KDIVVAG A NGL+A+KLAR G V+LL Sbjct: 1 MNKKET--IRVLIADDHAIVREGLKQILADTKDIVVAGAAENGLDAVKLARAGEAHVLLL 58 Query: 106 DIVLPDRSGIDILKQIRKEQPDLPVLILSIHREDQYAIRSLKAGAAGFLNKQASPSELLA 165 DI +PDRSGI++LKQIRKE P + VL+LS+HREDQYAIRSLKAGA+G+LNKQ++P+EL+ Sbjct: 59 DISMPDRSGIEVLKQIRKECPAIAVLMLSMHREDQYAIRSLKAGASGYLNKQSAPAELVN 118 Query: 166 AIRQAAAGRKYVSPSLAQELANQIGFDHDTPLHETLSDREYQTMVMIASGKTVSDIASEL 225 AIRQ A+GRKY+S LAQELANQ+G D + P HETLSDREYQT+ MIASGKTVSDIASEL Sbjct: 119 AIRQVASGRKYISTELAQELANQVGDDREIPPHETLSDREYQTLTMIASGKTVSDIASEL 178 Query: 226 LLSVKTISMYRSRVLAKMKMRHNAELTHYALKNNLVE 262 +LSVKTISMYRSR+L KMK+RHNAELTHYA++N+LV+ Sbjct: 179 VLSVKTISMYRSRLLQKMKLRHNAELTHYAIRNHLVD 215 >ref|ZP_08503346.1| Response regulator receiver, LuxR family [Methyloversatilis universalis FAM5] gb|EGK73169.1| Response regulator receiver, LuxR family [Methyloversatilis universalis FAM5] Length = 216 Score = 263 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 135/215 (62%), Positives = 176/215 (81%), Gaps = 4/215 (1%) Query: 52 AAIKVLIADDHAIVREGLRQICAGSKDIVVAGNAANGLEAIKLAREGNG----DVMLLDI 107 ++I++LIADDHAIVR GLRQI + S D+VV G A NG+EA+ R+GNG D++L+D+ Sbjct: 2 SSIRILIADDHAIVRSGLRQILSDSPDLVVTGEAENGVEAMHKLRDGNGNASFDLVLMDV 61 Query: 108 VLPDRSGIDILKQIRKEQPDLPVLILSIHREDQYAIRSLKAGAAGFLNKQASPSELLAAI 167 +PDR+GID LK +RKE P LPVL+LS+H E+QYAIR+LKAGAAG+L KQ++P +L+ AI Sbjct: 62 SMPDRNGIDTLKLVRKEYPKLPVLVLSMHPEEQYAIRALKAGAAGYLTKQSAPDQLVNAI 121 Query: 168 RQAAAGRKYVSPSLAQELANQIGFDHDTPLHETLSDREYQTMVMIASGKTVSDIASELLL 227 RQ A+G+KYVSPSLA ELAN I D + P HE LSDREYQT+VMIASG+T++ I EL L Sbjct: 122 RQVASGKKYVSPSLAMELANAITDDSERPPHEKLSDREYQTLVMIASGRTLTQIGEELNL 181 Query: 228 SVKTISMYRSRVLAKMKMRHNAELTHYALKNNLVE 262 SVKT+S+YR+R+L KM+M++NAELTHY LK+ LV+ Sbjct: 182 SVKTVSVYRARLLEKMRMKNNAELTHYGLKHGLVD 216