BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3318.p (241 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776168.1| signal transduction histidine kinase [Herbas... 166 2e-39 ref|YP_001353143.1| two-component sensor histidine kinase [Janth... 140 1e-31 ref|YP_001100138.1| hypothetical protein HEAR1862 [Herminiimonas... 136 2e-30 ref|ZP_08273608.1| hypothetical protein IMCC9480_1610 [Oxalobact... 134 1e-29 ref|YP_001889939.1| PAS/PAC sensor signal transduction histidine... 126 3e-27 >ref|YP_003776168.1| signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ64260.1| signal transduction histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 356 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 127/242 (52%), Positives = 147/242 (60%), Gaps = 6/242 (2%) Query: 1 MTGPSQAAMMKPCSYLPQATPSMSALPLPDPSQVQRIREEERTRIARDLHDELGAQLTGI 60 MT AAMMK S LP A S PLP P+ IRE+ER RIARDLHD+LG L G+ Sbjct: 118 MTCRRGAAMMKLYS-LPAAFMSH---PLPPPATAIHIREQERERIARDLHDDLGGVLAGV 173 Query: 61 GMALGQLREQLALERHAA-LPQADYAAQLLAQAREGMERIIDDLHPPIVEFGLADALRWQ 119 GMALG+L+EQLA + AA L +AD A QLL QA M IID+LHPPIVEFGL DAL+WQ Sbjct: 174 GMALGRLQEQLAAQGLAAPLAEADEARQLLQQAMASMHSIIDELHPPIVEFGLVDALQWQ 233 Query: 120 CRHFSRQSGVDCQFLATDQLAVQDVFLILSLLRILREALNNIARHAAASQVEVRVEQTGD 179 CR R+ + CQ L +D FLIL LLRILREA +N ARH AS + V + Sbjct: 234 CRQIQREYRLHCQLDCPPTLEQEDRFLILGLLRILREAASNAARHGRASALRVDLRMRQA 293 Query: 180 SLHLHIDDNGRGFDPA-ATGRDGRRGHGLANMRQRAAALGGSAAWEARAGHGSRVHICIP 238 L + I D+G G P A R GHGL NMR+RA ALGG EA G + IP Sbjct: 294 RLEMQIADDGCGIAPLHAKEVAPRHGHGLRNMRERAQALGGELFIEAGQDGGVVIRTLIP 353 Query: 239 VA 240 VA Sbjct: 354 VA 355 >ref|YP_001353143.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] gb|ABR91072.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 490 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 118/207 (57%), Gaps = 2/207 (0%) Query: 33 QVQRIREEERTRIARDLHDELGAQLTGIGMALGQLREQLALERHAALPQADYAAQLLAQA 92 V ++E+ERTRIAR++HD+LG LT I MAL L +L + L +A Y L+ + Sbjct: 270 HVNTVKEKERTRIAREIHDDLGGNLTAIKMALALLTRRLPGKSSELLEKAAYVESLVDRT 329 Query: 93 REGMERIIDDLHPPIVEFGLADALRWQCRHFSRQSGVDCQFLATDQLAVQDVFLILSLLR 152 E + RI DL P I++FGL A+ WQ + F +Q G+ C+F++ D+ +L R Sbjct: 330 IETVHRIAGDLRPGILDFGLVAAIDWQSKEFEKQLGIPCEFVSNQAEIDLDLDQATALFR 389 Query: 153 ILREALNNIARHAAASQVEVRVEQTGDSLHLHIDDNGRGFDPAATGRDGRRGHGLANMRQ 212 I +EAL NIA+HA AS V V++ T + L I DNGRG + A R + G+ M + Sbjct: 390 IFQEALTNIAKHAQASLVSVQLMHTPQYVRLEIIDNGRGIELA--DRAKPKSFGIRGMVE 447 Query: 213 RAAALGGSAAWEARAGHGSRVHICIPV 239 R+ A+GGS + G+ V I +P+ Sbjct: 448 RSVAMGGSLSVSTAPKGGTVVAINLPL 474 >ref|YP_001100138.1| hypothetical protein HEAR1862 [Herminiimonas arsenicoxydans] emb|CAL62014.1| Putative signal transduction histidine kinase [Herminiimonas arsenicoxydans] Length = 478 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 82/216 (37%), Positives = 119/216 (55%), Gaps = 18/216 (8%) Query: 32 SQVQRIREEERTRIARDLHDELGAQLTGIGMALGQLREQLALERHAALPQADYAAQLLAQ 91 + + ++E+ERT IAR++HD+LG LT I MAL L +L + + +ADY L+ + Sbjct: 269 AHIDIVKEQERTHIAREIHDDLGGNLTAIKMALALLTRRLPRKNVELIEKADYVESLVDR 328 Query: 92 AREGMERIIDDLHPPIVEFGLADALRWQCRHFSRQSGVDCQF--------LATDQLAVQD 143 E + RI +L P I++FGL A+ WQ R F +Q G+ CQF LA DQ Sbjct: 329 TIESVHRIAGNLRPGILDFGLVAAIDWQGREFEKQVGIPCQFSSNKTEIDLALDQAT--- 385 Query: 144 VFLILSLLRILREALNNIARHAAASQVEVRVEQTGDSLHLHIDDNGRGFDPAATGRDGRR 203 +L RI +EAL NIA+HA AS V V++ T + L I DNGRG T R+ + Sbjct: 386 -----ALFRIFQEALTNIAKHAKASLVTVQLVHTRQYVRLEIVDNGRGIQ--MTDRNKPK 438 Query: 204 GHGLANMRQRAAALGGSAAWEARAGHGSRVHICIPV 239 G+ M +R+ A+GGS + G+ V I +P+ Sbjct: 439 SFGIRGMVERSIAMGGSLSVSTAPKGGTIVAINVPL 474 >ref|ZP_08273608.1| hypothetical protein IMCC9480_1610 [Oxalobacteraceae bacterium IMCC9480] gb|EGF32927.1| hypothetical protein IMCC9480_1610 [Oxalobacteraceae bacterium IMCC9480] Length = 446 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 82/208 (39%), Positives = 118/208 (56%), Gaps = 3/208 (1%) Query: 32 SQVQRIREEERTRIARDLHDELGAQLTGIGMALGQLREQLALERHAALPQADYAAQLLAQ 91 + ++R++EEERTRIAR++HD+ G LT I MAL LR +L + A +ADY L+ + Sbjct: 222 AHIERVKEEERTRIAREIHDDRGGNLTAIKMALALLRRRLP-DDPALTDKADYVDSLVDR 280 Query: 92 AREGMERIIDDLHPPIVEFGLADALRWQCRHFSRQSGVDCQFLATDQLAVQDVFLILSLL 151 E + RI DL P I++FG+ A+ WQ F +Q G+ C ++D +L Sbjct: 281 TIESIHRISVDLRPSILDFGIVAAIEWQAAEFEKQLGIPCHVASSDSDIDLPPEQASALF 340 Query: 152 RILREALNNIARHAAASQVEVRVEQTGDSLHLHIDDNGRGFDPAATGRDGRRGHGLANMR 211 RI +E+LNNI++HA AS V+VR+ + + + I DNG G AA R G+ M Sbjct: 341 RIFQESLNNISKHARASSVQVRLNRNQRGIRMEISDNGTGI--AARDRQKPASFGIRGMI 398 Query: 212 QRAAALGGSAAWEARAGHGSRVHICIPV 239 +RA ALGGS + GS V I IP+ Sbjct: 399 ERANALGGSLSVSNLPKGGSMVAIRIPL 426 >ref|YP_001889939.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia phytofirmans PsJN] gb|ACD20568.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia phytofirmans PsJN] Length = 748 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 81/205 (39%), Positives = 112/205 (54%), Gaps = 9/205 (4%) Query: 38 REEERTRIARDLHDELGAQLTGIGMALGQLREQLALERHAALPQADYAAQLLAQAREGME 97 REEER RIAR++HDELG QLT + + + +R + A + A A LLA A + M+ Sbjct: 546 REEERKRIAREMHDELGQQLTALRLGVSAMRIEFAQDDPAL---AGRFRDLLALADDTMQ 602 Query: 98 ---RIIDDLHPPIVEFGLADALRWQCRHFSRQSGVDCQFLATDQLAVQDVFLILSLLRIL 154 ++ L P ++ G+ AL W FSR V C D V D ++L RI+ Sbjct: 603 VVRNVVASLRPAAIDAGIVAALEWLAAEFSRDGRVACHLRIPDDNLVLDEARAIALFRIV 662 Query: 155 REALNNIARHAAASQVEVRVEQTGDSLHLHIDDNGRGFDPAATGRDGRRGHGLANMRQRA 214 +EAL N+ARHAAA+QV + +EQTG L I D+G GFD A + GL MR+R Sbjct: 663 QEALTNVARHAAATQVTISLEQTGRCWVLEISDDGCGFDSMAA---RMKSFGLVGMRERV 719 Query: 215 AALGGSAAWEARAGHGSRVHICIPV 239 LGG + + G G+ + +CIPV Sbjct: 720 LMLGGEISVCSAPGSGTSITVCIPV 744