BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3317.p         (148 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776129.1| sensory transduction regulatory protein [Her...   188   3e-46
ref|YP_003777359.1| response regulator transcription regulator p...    90   1e-16
ref|ZP_03631702.1| response regulator receiver protein [bacteriu...    88   3e-16
ref|YP_481254.1| response regulator receiver protein [Frankia sp...    88   5e-16
ref|YP_003775976.1| two component response regulator protein [He...    87   7e-16

>ref|YP_003776129.1| sensory transduction regulatory protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ64221.1| sensory transduction regulatory protein [Herbaspirillum seropedicae
           SmR1]
          Length = 140

 Score =  188 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 108/138 (78%), Positives = 122/138 (88%)

Query: 1   MSRPSILMVDPSPESVELARFSLWRSKLECDFGWFEDAERAMESLFSPQAQHHPDTLPCL 60
           MSRPSILMVDPSPESVELARF LWR+KL+C FGWFEDAE A +SLF+PQA+ HP  LPCL
Sbjct: 1   MSRPSILMVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADLPCL 60

Query: 61  ILLEPRLPRMEGLDLLHMLRSQPHTQALPVIMFATSYDETDATRSQAAGANDYLVKPVDA 120
           ILLEPRLPRMEGL+LLHMLR+  HT+ALPV+MFATS D+ DA R++AAGANDYLVKPVDA
Sbjct: 61  ILLEPRLPRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDA 120

Query: 121 REFMELINQTVAHWLPLA 138
           R FMEL++QTV  WLP A
Sbjct: 121 RAFMELVSQTVRRWLPGA 138


>ref|YP_003777359.1| response regulator transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ65451.1| response regulator transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 188

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 59/146 (40%), Positives = 80/146 (54%), Gaps = 5/146 (3%)

Query: 1   MSRPSILMVDPSPESVELARFSLWRSKLECDFGWFEDAERAMESLFSPQAQHHPDTLPCL 60
           MS PSI+M+DPSPE+ ELARF+LWR+ L C F   +D   A   L S +      T P L
Sbjct: 13  MSFPSIIMIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGRRSGDCAT-PSL 71

Query: 61  ILLEPRLPRMEGLDLLHMLRSQPHTQALPVIMFATSYDETDATRSQAAGANDYLVKPVDA 120
           ILLE  +   +GL+LL  LR+  H    PV++F  S+D      +  AGA  YL KP+D 
Sbjct: 72  ILLESDMECGDGLELLRELRASSHLAEAPVVVFP-SHDTEGEREALDAGATAYLPKPIDG 130

Query: 121 REFMELINQTVAHWLPLAPSREADAP 146
             +   + + V  W  ++   EA AP
Sbjct: 131 ERYARCVVEMVERWCDVS---EAAAP 153


>ref|ZP_03631702.1| response regulator receiver protein [bacterium Ellin514]
 gb|EEF58011.1| response regulator receiver protein [bacterium Ellin514]
          Length = 150

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/140 (36%), Positives = 77/140 (55%), Gaps = 2/140 (1%)

Query: 1   MSRPSILMVDPSPESVELARFSLWRSKLECDFGWFEDAERAMESLFSPQAQHHPDT--LP 58
           M    IL+V+ +     LAR +L ++ +        D   A+E L    +  H D   LP
Sbjct: 1   MENNYILLVEDNRNDEILARRALQKNSINNPLFVAHDGVEAIEFLMGTGSYSHRDARQLP 60

Query: 59  CLILLEPRLPRMEGLDLLHMLRSQPHTQALPVIMFATSYDETDATRSQAAGANDYLVKPV 118
            L+LL+ +LPRM+GL++L  LRS   T+ LPV++  +S +E D  RS   G N+Y+ KPV
Sbjct: 61  ALVLLDLKLPRMDGLEVLRQLRSHELTRRLPVVVLTSSDEEQDVKRSYELGVNNYIRKPV 120

Query: 119 DAREFMELINQTVAHWLPLA 138
           D  EF+E + Q   +WL  +
Sbjct: 121 DFNEFVETVRQLSLYWLQFS 140


>ref|YP_481254.1| response regulator receiver protein [Frankia sp. CcI3]
 gb|ABD11525.1| response regulator receiver protein [Frankia sp. CcI3]
          Length = 167

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 2/139 (1%)

Query: 1   MSRPSILMVDPSPESVELARFSLWRSKLECDFGWFEDAERAMESLF--SPQAQHHPDTLP 58
           + RP+IL+V+  P+ +EL   +L    +        D   A+  LF   P A   PD  P
Sbjct: 3   IERPNILLVEDDPDDIELTLHALHTKNIMASIEVLRDGAEALAFLFRTGPYADRSPDRDP 62

Query: 59  CLILLEPRLPRMEGLDLLHMLRSQPHTQALPVIMFATSYDETDATRSQAAGANDYLVKPV 118
            ++LL+ +LP+++GL++L  L+  P  + +PV+M  +S++E D   S   G N Y+VKPV
Sbjct: 63  KVVLLDLKLPKVDGLEVLQRLKGDPALRTVPVVMLTSSHEERDIVASYDLGVNSYIVKPV 122

Query: 119 DAREFMELINQTVAHWLPL 137
           D  +F E +     +WL L
Sbjct: 123 DFGQFTEAVRTAGMYWLLL 141


>ref|YP_003775976.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ64068.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 151

 Score = 87.4 bits (215), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 54/129 (41%), Positives = 72/129 (55%)

Query: 6   ILMVDPSPESVELARFSLWRSKLECDFGWFEDAERAMESLFSPQAQHHPDTLPCLILLEP 65
           I++VD SPE  EL R +L   KL     WF DAE A E  F  +     D  P LILL+ 
Sbjct: 8   IILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGEYAQRRDLHPYLILLDL 67

Query: 66  RLPRMEGLDLLHMLRSQPHTQALPVIMFATSYDETDATRSQAAGANDYLVKPVDAREFME 125
            LP M G D L +++S   T  +PV+MF++S D+ D  +S   GAN Y+VK  D +EFM 
Sbjct: 68  NLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKSTDPKEFMG 127

Query: 126 LINQTVAHW 134
            +  T  +W
Sbjct: 128 TVVDTGIYW 136