BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3314.p (546 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776127.1| methyl-accepting chemotaxis transmembrane pr... 724 0.0 ref|YP_582315.1| Methyl-accepting chemotaxis protein [Cupriavidu... 339 7e-91 ref|YP_003777404.1| methyl-accepting chemotaxis protein I [Herba... 318 2e-84 ref|YP_315380.1| methyl-accepting chemotaxis sensory transducer ... 313 6e-83 ref|YP_001354516.1| methyl-accepting chemotaxis protein [Janthin... 299 7e-79 >ref|YP_003776127.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64219.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 548 Score = 724 bits (1869), Expect = 0.0, Method: Composition-based stats. Identities = 491/549 (89%), Positives = 514/549 (93%), Gaps = 4/549 (0%) Query: 1 MTITKRLILTLSTALLALLFVGADGLWQLQRAQQRLELIQNRIIPGMDSLNLLKGYLADS 60 MTITKRLI+TLSTALLALLFVGADGLWQLQRAQQRLELIQNRIIPGMDSLNLLKGYLADS Sbjct: 1 MTITKRLIITLSTALLALLFVGADGLWQLQRAQQRLELIQNRIIPGMDSLNLLKGYLADS 60 Query: 61 RLAGYRLSVFANLPDKTALQKAVDASNKALDDEFAHYERDLIFDEKDRALIQADKANIEA 120 RLAGYRLSVFANL DK+ LQKAVD +NK LD+EFAHYERDLIFDEKDRALIQADKANIEA Sbjct: 61 RLAGYRLSVFANLSDKSGLQKAVDTANKLLDEEFAHYERDLIFDEKDRALIQADKANIEA 120 Query: 121 YRKALVPFFAAAYANDMDGVRATLQAGTPLAVSAAAAKKGFEDHILVGRQMIDTVKQESD 180 YRKALVPFFAAAYANDMDGVRATLQAGTPLA+SAAAAKKGFEDHIL+GR+MIDT+KQESD Sbjct: 121 YRKALVPFFAAAYANDMDGVRATLQAGTPLAISAAAAKKGFEDHILIGRKMIDTIKQESD 180 Query: 181 AAYTFALRAMIAVIVVAVLLTGVLGIRTLRSVTRSLGKIQQTFEHVSQTLDLSRPVPVER 240 AY FALR MIAV+VVAVLLTG+LG++ +RSV RSLGKIQ TFEHVSQTLDLSRPVPVER Sbjct: 181 EAYAFALRTMIAVVVVAVLLTGLLGLQVVRSVIRSLGKIQHTFEHVSQTLDLSRPVPVER 240 Query: 241 MDEIGRTAAAFNKLLARIVDVVATTRTSTDSVTVAARQIAAGNADLSARTEQQAAALEES 300 MDEIGRTAAAFNKLLARIVDVVATTRTSTDSVTVAARQIAAGNADLSARTEQQAAALEES Sbjct: 241 MDEIGRTAAAFNKLLARIVDVVATTRTSTDSVTVAARQIAAGNADLSARTEQQAAALEES 300 Query: 301 ASSLEELTSVVLQNTQNARQANELAQSASHIASQGGDVVRQVVDTMNSINASSRKIVDII 360 ASSLE+LTSVVLQNTQNARQANELAQSASHIASQGGDVVRQVVDTMNSIN SSRKIVDII Sbjct: 301 ASSLEQLTSVVLQNTQNARQANELAQSASHIASQGGDVVRQVVDTMNSINESSRKIVDII 360 Query: 361 AVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELIDDSV 420 AVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELIDDSV Sbjct: 361 AVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELIDDSV 420 Query: 421 DKVGSGSKLVEQAGATMSDIVDSVQRVTQIVGNIADASEEQSAGITQVNQAISQMDQGTQ 480 KVGSGSKLVEQAG TMSDIVDSVQRVT IVG+IA+ASEEQSAGI+QVNQAI+QMDQGTQ Sbjct: 421 SKVGSGSKLVEQAGTTMSDIVDSVQRVTVIVGDIANASEEQSAGISQVNQAIAQMDQGTQ 480 Query: 481 QNAALVEEAAAAAQALQGQAEKLESVVAVFKLEGRAAMPVRSVEVKPVAAARV---PVAS 537 QNAALVEEAAAAA ALQ QAE LESVVAVFKLEGR + ++ P +AAR+ P A Sbjct: 481 QNAALVEEAAAAAHALQQQAETLESVVAVFKLEGRLNGSIPVIQA-PASAARLPASPAAR 539 Query: 538 GQVPELEEF 546 P LEEF Sbjct: 540 QAEPALEEF 548 >ref|YP_582315.1| Methyl-accepting chemotaxis protein [Cupriavidus metallidurans CH34] gb|ABF07046.1| Methyl-accepting chemotaxis protein [Cupriavidus metallidurans CH34] Length = 513 Score = 339 bits (870), Expect = 7e-91, Method: Composition-based stats. Identities = 247/512 (48%), Positives = 342/512 (66%), Gaps = 1/512 (0%) Query: 1 MTITKRLILTLSTALLALLFVGADGLWQLQRAQQRLELIQNRIIPGMDSLNLLKGYLADS 60 MTI+KRL+LTLS ALLALLFVG G+WQ+ +++RLE + + + LN + +A Sbjct: 1 MTISKRLLLTLSIALLALLFVGIGGIWQMGESEKRLEYFNDNTLGSVHDLNTVAESVAAM 60 Query: 61 RLAGYRLSVFANLPDKTALQKAVDASNKALDDEFAHYERDLIFDEKDRALIQADKANIEA 120 R+ YR + + +++ D ++K D YERD I DE DRA++ AD+A ++ Sbjct: 61 RIELYRHGLSEDAKGLAEIEQQFDEASKRFDRMIDKYERDDISDETDRAMLAADRAAVKH 120 Query: 121 YRKALVPFFAAAYANDMDGVRATLQAGTPLAVSAAAAKKGFEDHILVGRQMIDTVKQESD 180 YR + FF + D G + L AG L ++ A +K +H+ + + + Sbjct: 121 YRDQIPAFFERSRTGDYAGAKQMLTAGE-LFKASLALRKTVAEHLEYNTKQGGIAVENNK 179 Query: 181 AAYTFALRAMIAVIVVAVLLTGVLGIRTLRSVTRSLGKIQQTFEHVSQTLDLSRPVPVER 240 A + ++ ++VIV+ V LT ++ + R + SL +IQ + E+VS+TLDL V+R Sbjct: 180 AQHARSVSISLSVIVITVALTAIMALMLFRRIRGSLAQIQGSLEYVSRTLDLDHRAAVDR 239 Query: 241 MDEIGRTAAAFNKLLARIVDVVATTRTSTDSVTVAARQIAAGNADLSARTEQQAAALEES 300 +DEIG TA +FN LL R+ + R STDSV VAA QIAAGN DLS+RTEQQAA+LEE+ Sbjct: 240 LDEIGLTAQSFNTLLERVAGTLRDVRRSTDSVGVAAAQIAAGNTDLSSRTEQQAASLEET 299 Query: 301 ASSLEELTSVVLQNTQNARQANELAQSASHIASQGGDVVRQVVDTMNSINASSRKIVDII 360 ASS+E+L++ V QN NA+QA+ LA +A+ +A QG V Q+V+TM +I+ SS +I +I Sbjct: 300 ASSMEQLSTTVRQNADNAQQASSLASNAAQVADQGNQAVNQMVETMGAISTSSGRIAEIT 359 Query: 361 AVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELIDDSV 420 +I+GIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRS++AAKEIK+LI+ S Sbjct: 360 NMIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSSSAAKEIKDLIEASA 419 Query: 421 DKVGSGSKLVEQAGATMSDIVDSVQRVTQIVGNIADASEEQSAGITQVNQAISQMDQGTQ 480 + V +GS+ G+TM++I +V+RV+ I+ I+ AS EQS GI QV A+ QMDQ TQ Sbjct: 420 ETVRAGSEQAHGVGSTMTEIQQAVRRVSDIITEISAASREQSTGIEQVGHAVGQMDQVTQ 479 Query: 481 QNAALVEEAAAAAQALQGQAEKLESVVAVFKL 512 QNAALVEEAAAAAQ+L QA KL +V F++ Sbjct: 480 QNAALVEEAAAAAQSLDEQASKLREMVGQFRM 511 >ref|YP_003777404.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] gb|ADJ65496.1| methyl-accepting chemotaxis protein I, serine sensor receptor protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 231/516 (44%), Positives = 321/516 (62%), Gaps = 4/516 (0%) Query: 1 MTITKRLILTLSTALLALLFVGADGLWQLQRAQQRLELIQNRIIPGMDSLNLLKGYLADS 60 ++I RL + + ++ + + + ++ R ++P + SL+ + + Sbjct: 3 LSIVNRLYILIGAVIIGCVVLAGANMVKMNRTYADASFASENVVPSLLSLSTITQGINGM 62 Query: 61 RLAGYRLSVFANLPDKTALQKAVDASNKALDDEFAHYERDLIFDEKDRALIQADKANIEA 120 R+A +R D+ A++ + +++ K ++D YE++ + D D+ L++A + + + Sbjct: 63 RIATWRYLALTESVDRGAIESSFNSAKKRVEDALQKYEQEQLADATDKELLRAVRVSYQE 122 Query: 121 YRKALVPFFAAAYANDMDGVRATLQAGTPLAVSAAAAKKGFEDHILVGRQMIDTVKQESD 180 + K+L A A + RA L P+ A + Q QE+ Sbjct: 123 FDKSLAEALKLANAGQWNEARALLANNQPVIDRLNKAMTELRAYNEKISQAGAHRAQETM 182 Query: 181 AAYTFALRAMIAVIVVAVLLTGVLGIRTLRSVTRSLGKIQQTFEHVSQTLDLSRPVPVER 240 AA + A ++ V L G+L R + RSL + + E +++ DL+R + Sbjct: 183 AAARLHAILISAAVIAVVTLMGLL---IARKIARSLAEAVELAETIAEG-DLTREIDTSS 238 Query: 241 MDEIGRTAAAFNKLLARIVDVVATTRTSTDSVTVAARQIAAGNADLSARTEQQAAALEES 300 DEIG AA K+ +V +VAT RT ++V A+ QIA GN DLSARTEQQA++LE++ Sbjct: 239 TDEIGHLMAAMAKMNRNLVTIVATVRTGVNTVAAASSQIATGNMDLSARTEQQASSLEQT 298 Query: 301 ASSLEELTSVVLQNTQNARQANELAQSASHIASQGGDVVRQVVDTMNSINASSRKIVDII 360 A++ EELTS V QN +NA QA++LA +AS IA++GG+VV+QVV TM I +SS I DII Sbjct: 299 AAATEELTSTVKQNAENALQADQLASAASGIAAEGGEVVKQVVTTMEEIRSSSLNIADII 358 Query: 361 AVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELIDDSV 420 +VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK+LIDDSV Sbjct: 359 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKQLIDDSV 418 Query: 421 DKVGSGSKLVEQAGATMSDIVDSVQRVTQIVGNIADASEEQSAGITQVNQAISQMDQGTQ 480 KV +GS+LV AG TM +V+SV+RVT +V I+ AS EQS GI QVNQAIS MDQ TQ Sbjct: 419 SKVENGSQLVMSAGNTMQQVVESVRRVTDVVTEISAASREQSLGIEQVNQAISHMDQSTQ 478 Query: 481 QNAALVEEAAAAAQALQGQAEKLESVVAVFKLEGRA 516 +NAALVEEA AAAQ+LQ QA +LE V VFKL A Sbjct: 479 ENAALVEEATAAAQSLQEQARQLERAVNVFKLRQEA 514 >ref|YP_315380.1| methyl-accepting chemotaxis sensory transducer [Thiobacillus denitrificans ATCC 25259] gb|AAZ97575.1| chemotaxis sensory transducer [Thiobacillus denitrificans ATCC 25259] Length = 572 Score = 313 bits (801), Expect = 6e-83, Method: Composition-based stats. Identities = 248/549 (45%), Positives = 337/549 (61%), Gaps = 19/549 (3%) Query: 1 MTITKRLILTLSTALLALLFVGADGLWQLQRAQQRLELIQNRIIPGMDSLNLLKGYLADS 60 ++I RL+ + + L +G GL L L+ + + G+ L + + S Sbjct: 7 LSIKSRLVFVIGFLSILLTAIGGLGLVSLSATNGSLKTVYEDRVVGLGHLERINALMNGS 66 Query: 61 RL-----AGYRLSVFANLPDKTAL--QKAVDASNKALD-DEFAHYERDLIFDEKDRALIQ 112 ++ +LS F PD +A+ Q+ D N + D +++AL Sbjct: 67 QIIVGEAVAGQLSAF---PDDSAVVDQRVNDIKNTITEIDGIWKTFLASHLSSEEKALAD 123 Query: 113 ADKANIEAY-RKALVPFFAAAYANDMDGVRATLQAGTPLAVSAAAAKKGFEDHILVGRQM 171 A A+ + Y R+ +VP AA A+D LQ P+ + A + E I ++ Sbjct: 124 AFSASRQKYGREGVVPVLAALSAHDFQQAGEILQG--PMRETYPAVRANAEALIASQLKL 181 Query: 172 IDTVKQESDAAYTFALRAMIAVIVVAVLLTGVLGIRTLRSVTRSLGKIQQTFEHVSQTLD 231 + + + + + IV VLL G+ G+ +R++TR L + + E V+ D Sbjct: 182 AQSEFAAAQSRFVMVRNISVFAIVAGVLLAGLTGVWLVRAITRPLNQAVRIAESVAAG-D 240 Query: 232 LSRPVPVERMDEIGRTAAAFNKLLARIVDVVATTRTSTDSVTVAARQIAAGNADLSARTE 291 L++ + V+ DE G+ A + + D+V R TD++ VA+R+IA+GNADLS+RTE Sbjct: 241 LTQKIEVQSQDETGQLMQALKDMNVSLADIVGQVRHGTDTIAVASREIASGNADLSSRTE 300 Query: 292 QQAAALEESASSLEELTSVVLQNTQNARQANELAQSASHIASQGGDVVRQVVDTMNSINA 351 QA++LEE+ASS+EELTS V QN +NARQAN+L S + +A +GG+VV QVVDTM SI Sbjct: 301 SQASSLEETASSMEELTSTVRQNAENARQANQLVVSTADVAVKGGEVVGQVVDTMASIKD 360 Query: 352 SSRKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKE 411 SSRKI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKE Sbjct: 361 SSRKISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKE 420 Query: 412 IKELIDDSVDKVGSGSKLVEQAGATMSDIVDSVQRVTQIVGNIADASEEQSAGITQVNQA 471 IK LI+DSV KV +GSKLV++AG TM +IV SV+RVT I+ IA AS+EQSAGI QVNQA Sbjct: 421 IKSLIEDSVGKVDAGSKLVDEAGKTMDEIVSSVKRVTDIMSEIAAASQEQSAGIEQVNQA 480 Query: 472 ISQMDQGTQQNAALVEEAAAAAQALQGQAEKLESVVAVFKLEG----RAAMPVRSVEVKP 527 + QMD+ TQQNAALVEEAAAAA++LQ QA KL V+VF+L+G R +PV + V P Sbjct: 481 VGQMDEMTQQNAALVEEAAAAAESLQEQAAKLADAVSVFRLDGAYAQRREVPVSAPRVAP 540 Query: 528 VAAARVPVA 536 + P + Sbjct: 541 LPTRPRPAS 549 >ref|YP_001354516.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89935.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 299 bits (766), Expect = 7e-79, Method: Composition-based stats. Identities = 238/537 (44%), Positives = 325/537 (60%), Gaps = 8/537 (1%) Query: 1 MTITKRLILTLSTALLALLFVGADGLWQLQRAQQRLELIQNRIIPGMDSLNLLKGYLADS 60 ++I RLI T++ + L+ GA G++ LQ L+ + + ++N L + Sbjct: 5 LSIKMRLIGTMAFMGIMLIVGGAMGVFGLQSTNNSLQDVYGNQLASSQAINTAITRLFQA 64 Query: 61 RLAGYRLSVFANLPDKTALQKAVDASNKALDDEFAHYERDLIFDEKDRALIQADKANIEA 120 R R+ + ++ + D D + Y L + ++ L AN + Sbjct: 65 RSTIDRVLIKSSGSKNAEIFARADTLRNESDAAWKQYYA-LPMNADEKKLADEVTANRDT 123 Query: 121 Y-RKALVPFFAAAYANDMDGVRA-TLQAGTPLAVSAAAAKKGFEDHILVGRQMIDTVKQE 178 Y R+ +P A A + L+ TPL + + + ++ + + + Sbjct: 124 YLREGALPLIKAIQAGLFEEAELLMLEKATPLFIKMTQSAEKLQEFQM---KAAAASYES 180 Query: 179 SDAAYTFALRAMIAVIVVAVLLTGVLGIRTLRSVTRSLGKIQQTFEHVSQTLDLSRPVPV 238 S + ++ A I ++ +L+ + +R++ + LG++ F +S DL+ + V Sbjct: 181 SQSMFSLFRIAAIGGVLFGLLVVAIAAFFLIRAIMQPLGEMLNHFSAISAG-DLTSRIEV 239 Query: 239 ERMDEIGRTAAAFNKLLARIVDVVATTRTSTDSVTVAARQIAAGNADLSARTEQQAAALE 298 + +E+G+ + +++ V R + ++ VA +QIAAGN DLS+RTEQQA++LE Sbjct: 240 KSRNEMGKLMGGLQVMQKSLIETVFNVRQGSTAIGVATQQIAAGNLDLSSRTEQQASSLE 299 Query: 299 ESASSLEELTSVVLQNTQNARQANELAQSASHIASQGGDVVRQVVDTMNSINASSRKIVD 358 E+ASS+EELTS V QN NARQAN+LA SAS +A +GG VV QVVDTM IN S++KIVD Sbjct: 300 ETASSMEELTSTVKQNADNARQANQLAASASTVAEKGGVVVSQVVDTMEEINTSAKKIVD 359 Query: 359 IIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELIDD 418 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAKEIK LI D Sbjct: 360 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLIGD 419 Query: 419 SVDKVGSGSKLVEQAGATMSDIVDSVQRVTQIVGNIADASEEQSAGITQVNQAISQMDQG 478 SVDKV GSKLV +AG TM ++V VQ+VT I+ I AS+EQSAGI QVNQAISQMDQ Sbjct: 420 SVDKVEIGSKLVAEAGVTMKEVVHGVQQVTDIMSEITAASQEQSAGIEQVNQAISQMDQV 479 Query: 479 TQQNAALVEEAAAAAQALQGQAEKLESVVAVFKLEG-RAAMPVRSVEVKPVAAARVP 534 TQQNAALVEEAAAAA++L QA KL V+VFKL+G AA PV+ K A A P Sbjct: 480 TQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDGVAAAAPVKKTASKIAAVASSP 536