BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3312.p         (136 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776125.1| hypothetical protein Hsero_2721 [Herbaspiril...   163   9e-39
ref|ZP_02887726.1| conserved hypothetical protein [Burkholderia ...   141   3e-32
ref|YP_001895037.1| hypothetical protein Bphyt_1398 [Burkholderi...   140   8e-32
ref|YP_003604616.1| hypothetical protein BC1002_1015 [Burkholder...   140   9e-32
ref|ZP_03269393.1| conserved hypothetical protein [Burkholderia ...   139   1e-31

>ref|YP_003776125.1| hypothetical protein Hsero_2721 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64217.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 113

 Score =  163 bits (412), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 101/116 (87%), Positives = 106/116 (91%), Gaps = 3/116 (2%)

Query: 21  MIARIVRLICLSLAAMAMLGSAVQASASDLLTFKLEMQDGKLIPPRIEVPAGQRIKIEVH 80
           MIAR VRL   +L A A++G+A QA AS+L TFKLEMQDGKLIPPRIEVPAGQRIKIEVH
Sbjct: 1   MIARTVRL---ALLAAALMGAAAQAPASELPTFKLEMQDGKLIPPRIEVPAGQRIKIEVH 57

Query: 81  NIGKSAAEFESVELRKEKVLAPGAQSFVVIAPLRPGEYKFFDDFHLNMPPGVIVAK 136
           NIGKSAAEFESVELRKEKVLAPGAQSFVVIAPLRPGEYKFFDDFHLNMP GVIVAK
Sbjct: 58  NIGKSAAEFESVELRKEKVLAPGAQSFVVIAPLRPGEYKFFDDFHLNMPQGVIVAK 113


>ref|ZP_02887726.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
 gb|EDT06680.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
          Length = 110

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 84/113 (74%), Positives = 89/113 (78%), Gaps = 4/113 (3%)

Query: 24  RIVRLICLSLAAMAMLGSAVQASASDLLTFKLEMQDGKLIPPRIEVPAGQRIKIEVHNIG 83
           RI R I + LA+  +L  A QA+  DLLTFKLEM DGKL P RIEVPAGQRIKIEV N G
Sbjct: 2   RINRKIAV-LASSILLAGAAQAA--DLLTFKLEMNDGKLTPARIEVPAGQRIKIEVRNTG 58

Query: 84  KSAAEFESVELRKEKVLAPGAQSFVVIAPLRPGEYKFFDDFHLNMPPGVIVAK 136
           K AAEFESV+LRKEKVLAPGA SFVVIAPL PGEYKFFDDFH     GVIVAK
Sbjct: 59  KGAAEFESVQLRKEKVLAPGADSFVVIAPLSPGEYKFFDDFH-QQAQGVIVAK 110


>ref|YP_001895037.1| hypothetical protein Bphyt_1398 [Burkholderia phytofirmans PsJN]
 gb|ACD15813.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN]
          Length = 110

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 84/113 (74%), Positives = 88/113 (77%), Gaps = 4/113 (3%)

Query: 24  RIVRLICLSLAAMAMLGSAVQASASDLLTFKLEMQDGKLIPPRIEVPAGQRIKIEVHNIG 83
           RI R I +  AA  +L SA QA+  DL TFKLEM DGKL P RIEVPAGQRIKIEV N G
Sbjct: 2   RINRKIAI-FAATVLLASAAQAA--DLPTFKLEMNDGKLNPARIEVPAGQRIKIEVRNTG 58

Query: 84  KSAAEFESVELRKEKVLAPGAQSFVVIAPLRPGEYKFFDDFHLNMPPGVIVAK 136
           K AAEFESV+LRKEKVLAPGA SFVVIAPL PGEYKFFDDFH     GVIVAK
Sbjct: 59  KGAAEFESVQLRKEKVLAPGADSFVVIAPLEPGEYKFFDDFH-QQAQGVIVAK 110


>ref|YP_003604616.1| hypothetical protein BC1002_1015 [Burkholderia sp. CCGE1002]
 gb|ADG15105.1| conserved hypothetical protein [Burkholderia sp. CCGE1002]
          Length = 110

 Score =  140 bits (352), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 76/95 (80%), Positives = 78/95 (82%), Gaps = 1/95 (1%)

Query: 42  AVQASASDLLTFKLEMQDGKLIPPRIEVPAGQRIKIEVHNIGKSAAEFESVELRKEKVLA 101
           A  A A+DL TFKLEM DGKL P RIEVPAGQRIKIEV N GK AAEFESV+LRKEKVLA
Sbjct: 17  AATAHAADLPTFKLEMNDGKLNPARIEVPAGQRIKIEVRNTGKGAAEFESVQLRKEKVLA 76

Query: 102 PGAQSFVVIAPLRPGEYKFFDDFHLNMPPGVIVAK 136
           PGA SFVVIAPL PGEYKFFDDFH     GVIVAK
Sbjct: 77  PGADSFVVIAPLEPGEYKFFDDFH-QQAQGVIVAK 110


>ref|ZP_03269393.1| conserved hypothetical protein [Burkholderia sp. H160]
 gb|EDZ99025.1| conserved hypothetical protein [Burkholderia sp. H160]
          Length = 110

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 79/105 (75%), Positives = 83/105 (79%), Gaps = 5/105 (4%)

Query: 36  MAMLGS----AVQASASDLLTFKLEMQDGKLIPPRIEVPAGQRIKIEVHNIGKSAAEFES 91
           +AML +    A  A A+DL TFKLEM DGKL P RIEVPAGQRIKIEV N GK AAEFES
Sbjct: 7   IAMLAATFCLAATAHAADLPTFKLEMNDGKLNPARIEVPAGQRIKIEVRNTGKGAAEFES 66

Query: 92  VELRKEKVLAPGAQSFVVIAPLRPGEYKFFDDFHLNMPPGVIVAK 136
           V+LRKEKVLAPGA SFVVIAPL PGEYKFFDDFH     GVIVAK
Sbjct: 67  VQLRKEKVLAPGADSFVVIAPLEPGEYKFFDDFH-QQAQGVIVAK 110