BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3310.p (485 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776123.1| polyferredoxin protein [Herbaspirillum serop... 791 0.0 ref|YP_004752454.1| ferredoxin [Collimonas fungivorans Ter331] >... 669 0.0 ref|ZP_02887724.1| putative nitrogen fixation protein VnfA [Burk... 619 e-175 ref|YP_003907510.1| putative nitrogen fixation protein VnfA [Bur... 614 e-173 ref|YP_004227646.1| nitrogen fixation protein VnfA [Burkholderia... 612 e-173 >ref|YP_003776123.1| polyferredoxin protein [Herbaspirillum seropedicae SmR1] gb|ADJ64215.1| polyferredoxin protein [Herbaspirillum seropedicae SmR1] Length = 445 Score = 791 bits (2043), Expect = 0.0, Method: Composition-based stats. Identities = 424/445 (95%), Positives = 436/445 (97%) Query: 41 MRRHGAFIRGLQWIVVAVYALLILVPVFLPLPDETAHLWSNLTLIAQFAFWGIWWPFVLV 100 MRRHGAFIR LQWIVVAVYALLILVPVFLPLPDETAHLWSNLTLIAQFAFWGIWWPFVLV Sbjct: 1 MRRHGAFIRSLQWIVVAVYALLILVPVFLPLPDETAHLWSNLTLIAQFAFWGIWWPFVLV 60 Query: 101 SMVLMGRVWCGVLCPEGALTEFASRHGRGRAIPKWVRWGGWPFVAFALTTVYGQMVSVYQ 160 SMVLMGRVWCGVLCPEGALTEFAS+HGRGRAIP+WVRWGGWPFVAFALTT+YGQMVSVYQ Sbjct: 61 SMVLMGRVWCGVLCPEGALTEFASKHGRGRAIPRWVRWGGWPFVAFALTTIYGQMVSVYQ 120 Query: 161 YPKAVLLVLGGSTVGAMIIGYLYGRDKRVWCKYLCPVNGVFGLLAKLAPVHYKVNEDAWR 220 YPKAVLLVLGGSTVGA+IIGYLYGRDKRVWCKYLCPVNGVFGLLAKLAP+HYKVNEDAWR Sbjct: 121 YPKAVLLVLGGSTVGAIIIGYLYGRDKRVWCKYLCPVNGVFGLLAKLAPLHYKVNEDAWR 180 Query: 221 ASYHPEHKIIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALSFRPPAVEVVHFGKTQ 280 ASYHPEHKIIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIAL+FRPPAVEVV FGKT+ Sbjct: 181 ASYHPEHKIIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTFRPPAVEVVQFGKTE 240 Query: 281 NNLWESALVLYGLLGIAIGAFHWTVSPWFIAIKQDIATWLIERDIMWPFGTQAPWWLLTN 340 NNLWESALVLYGLLGIAIGAFHWTVSPWFIAIKQDIATWLI+RDIMWPFGTQAPWWLLTN Sbjct: 241 NNLWESALVLYGLLGIAIGAFHWTVSPWFIAIKQDIATWLIDRDIMWPFGTQAPWWLLTN 300 Query: 341 YPQQSDVFTWLDGAMVVGYILATGLVLGTGVALMFGLATRLLGKWEWSRFNHLVQALIPL 400 YPQQSDVFTWLDGAMVVGYILATGLVLG+GVALMF LATRLLGKW+W RFNHLVQALIPL Sbjct: 301 YPQQSDVFTWLDGAMVVGYILATGLVLGSGVALMFALATRLLGKWQWGRFNHLVQALIPL 360 Query: 401 AGCGVFVGLSATTISLLRAEHWPVYWANDVRAALLSAMTLWSLWLCWKVVARHATHRFQQ 460 AGCGVF+GLSATTISLLRAEH PVYWANDVRAALL+AMTLWSLWLCWKVVARHA H QQ Sbjct: 361 AGCGVFIGLSATTISLLRAEHLPVYWANDVRAALLAAMTLWSLWLCWKVVARHAGHWAQQ 420 Query: 461 VLAMLPLMGGLALVNTAWWLMFWGW 485 LAMLPLMGGLALVNTAWWLMFWGW Sbjct: 421 CLAMLPLMGGLALVNTAWWLMFWGW 445 >ref|YP_004752454.1| ferredoxin [Collimonas fungivorans Ter331] gb|AEK61631.1| Ferredoxin [Collimonas fungivorans Ter331] Length = 498 Score = 669 bits (1727), Expect = 0.0, Method: Composition-based stats. Identities = 349/487 (71%), Positives = 402/487 (82%), Gaps = 7/487 (1%) Query: 6 SKTPASAQEQEAGSRLNLMTTCT--QSPTLLTRTGDWMRRHGAFIRGLQWIVVAVYALLI 63 S P ++ Q M TC Q+ T L+RT DWMR H IR +QW +V VY LI Sbjct: 12 SSEPGRSRSQSQPQPNKPMNTCAIPQTQTRLSRTADWMRDHAKLIRWVQWGIVLVYGFLI 71 Query: 64 LVPVFLPLPDETAHLWSNLTLIAQFAFWGIWWPFVLVSMVLMGRVWCGVLCPEGALTEFA 123 LVP+FLPLPDETAH+WSNLTLIAQFAFWGIWWPFVL+SMVLMGRVWCGVLCPEGALTEFA Sbjct: 72 LVPIFLPLPDETAHIWSNLTLIAQFAFWGIWWPFVLISMVLMGRVWCGVLCPEGALTEFA 131 Query: 124 SRHGRGRAIPKWVRWGGWPFVAFALTTVYGQMVSVYQYPKAVLLVLGGSTVGAMIIGYLY 183 SRHG G+AIP W+RWGGWPFVAFALTT+YGQMVSVYQYPKAVLLVLGGST GA+++GYLY Sbjct: 132 SRHGLGKAIPHWMRWGGWPFVAFALTTIYGQMVSVYQYPKAVLLVLGGSTAGAIVVGYLY 191 Query: 184 GRDKRVWCKYLCPVNGVFGLLAKLAPVHYKVNEDAWRASY----HPEHK-IIPINCAPLV 238 GRDKRVWCKYLCPVNGVFGLLAKLAP HYKVNE AWRASY H + + +IP+NCAPLV Sbjct: 192 GRDKRVWCKYLCPVNGVFGLLAKLAPFHYKVNETAWRASYGTHSHTQGRTVIPVNCAPLV 251 Query: 239 PLRNMKGASDCHMCGRCSGHRDAIALSFRPPAVEVVHFGKTQNNLWESALVLYGLLGIAI 298 PLR MKGA+DCHMCGRCSGHRDAI L++R PA E+V G+ NNLWESAL LYGL+GIAI Sbjct: 252 PLRAMKGAADCHMCGRCSGHRDAIELTWRAPAEEIVRHGEQHNNLWESALALYGLMGIAI 311 Query: 299 GAFHWTVSPWFIAIKQDIATWLIERDIMWPFGTQAPWWLLTNYPQQSDVFTWLDGAMVVG 358 GAFHW+ SPWF+ +KQ IATWLI+RDIMWPF T APWW+ TNYP Q+DVF+WLDG +V+ Sbjct: 312 GAFHWSASPWFVQVKQAIATWLIDRDIMWPFDTHAPWWVFTNYPAQNDVFSWLDGGLVIA 371 Query: 359 YILATGLVLGTGVALMFGLATRLLGKWEWSRFNHLVQALIPLAGCGVFVGLSATTISLLR 418 YIL TGLVLGT + L+F L++R+LG + RFNHLVQ+ IPLAGCGVFVGLSATTISLLR Sbjct: 372 YILTTGLVLGTALTLLFALSSRVLGGCDRKRFNHLVQSTIPLAGCGVFVGLSATTISLLR 431 Query: 419 AEHWPVYWANDVRAALLSAMTLWSLWLCWKVVARHATHRFQQVLAMLPLMGGLALVNTAW 478 EH PV+WAND+RA LL A TLWS+WL W+V R+ + +++L+M P++ GLALVN AW Sbjct: 432 GEHLPVFWANDLRAILLIATTLWSVWLAWRVTGRYTSAPARRLLSMAPVIAGLALVNFAW 491 Query: 479 WLMFWGW 485 LMFW W Sbjct: 492 LLMFWLW 498 >ref|ZP_02887724.1| putative nitrogen fixation protein VnfA [Burkholderia graminis C4D1M] gb|EDT06678.1| putative nitrogen fixation protein VnfA [Burkholderia graminis C4D1M] Length = 468 Score = 619 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 320/465 (68%), Positives = 384/465 (82%), Gaps = 3/465 (0%) Query: 24 MTTCTQSPTLLTRTGDWMRRHGAFIRGLQWIVVAVYALLILVPVFLPLPDETAHLWSNLT 83 M+T P L G WM+RHG+ IRG+QW+VVAVYALLI+VP +PLPD++AHLW+NLT Sbjct: 1 MSTLMTRPGRLAAAGQWMQRHGSVIRGIQWVVVAVYALLIVVPAVMPLPDDSAHLWNNLT 60 Query: 84 LIAQFAFWGIWWPFVLVSMVLMGRVWCGVLCPEGALTEFASRHGRGRAIPKWVRWGGWPF 143 L AQF FWGIWWPFVL+SMV++GRVWCGVLCPEGAL EFAS+HGRG+AIP W+RWGGWPF Sbjct: 61 LAAQFVFWGIWWPFVLLSMVMLGRVWCGVLCPEGALAEFASKHGRGKAIPHWMRWGGWPF 120 Query: 144 VAFALTTVYGQMVSVYQYPKAVLLVLGGSTVGAMIIGYLYGRDKRVWCKYLCPVNGVFGL 203 VAF +TT+YGQMVSVYQYPKAVLLVLGGST+ A++IG LYGR+KRVWCKYLCPVNGVF L Sbjct: 121 VAFGITTIYGQMVSVYQYPKAVLLVLGGSTLAAIVIGLLYGREKRVWCKYLCPVNGVFSL 180 Query: 204 LAKLAPVHYKVNEDAWRASY---HPEHKIIPINCAPLVPLRNMKGASDCHMCGRCSGHRD 260 LA+LAP HYKV+EDAWR SY H++IPINCAPLVPLRNMKGASDCHMCGRCSGHRD Sbjct: 181 LARLAPFHYKVDEDAWRRSYKNGEHGHRVIPINCAPLVPLRNMKGASDCHMCGRCSGHRD 240 Query: 261 AIALSFRPPAVEVVHFGKTQNNLWESALVLYGLLGIAIGAFHWTVSPWFIAIKQDIATWL 320 AIAL++R P+ EVV G Q N+W++AL+LYGLLGIAIGAFHWT S WFI +K ATWL Sbjct: 241 AIALTWRAPSSEVVQLGDKQANVWDTALILYGLLGIAIGAFHWTASRWFIDLKMFFATWL 300 Query: 321 IERDIMWPFGTQAPWWLLTNYPQQSDVFTWLDGAMVVGYILATGLVLGTGVALMFGLATR 380 ++RDI WP T APW+L T+YP+Q+DVF+WLDG MV+GYILAT LV GT + ++ ATR Sbjct: 301 VDRDITWPLQTNAPWFLFTHYPEQNDVFSWLDGTMVIGYILATALVYGTALLVLMMGATR 360 Query: 381 LLGKWEWSRFNHLVQALIPLAGCGVFVGLSATTISLLRAEHWPVYWANDVRAALLSAMTL 440 LG++ R +HL Q LIPLAG GVF+GLSATT+SLLRAEH P++WA+DVR A+L+ + Sbjct: 361 TLGRFSSVRLHHLTQGLIPLAGAGVFLGLSATTLSLLRAEHVPLWWASDVRIAILAIANV 420 Query: 441 WSLWLCWKVVARHATHRFQQVLAMLPLMGGLALVNTAWWLMFWGW 485 WS WL W V R++ H ++ LAML + LA+V++AWWLMFWGW Sbjct: 421 WSAWLAWLVTRRYSEHFVRRGLAMLWFIAALAVVDSAWWLMFWGW 465 >ref|YP_003907510.1| putative nitrogen fixation protein VnfA [Burkholderia sp. CCGE1003] gb|ADN58219.1| putative nitrogen fixation protein VnfA [Burkholderia sp. CCGE1003] Length = 468 Score = 614 bits (1583), Expect = e-173, Method: Composition-based stats. Identities = 318/465 (68%), Positives = 380/465 (81%), Gaps = 3/465 (0%) Query: 24 MTTCTQSPTLLTRTGDWMRRHGAFIRGLQWIVVAVYALLILVPVFLPLPDETAHLWSNLT 83 M+T P L G WM+RHG+ IRG+QW+VVAVYALLI+VP +PLPD++AHLW+NLT Sbjct: 1 MSTVMTRPGRLAAAGQWMQRHGSVIRGIQWVVVAVYALLIIVPAVMPLPDDSAHLWNNLT 60 Query: 84 LIAQFAFWGIWWPFVLVSMVLMGRVWCGVLCPEGALTEFASRHGRGRAIPKWVRWGGWPF 143 L AQF FWGIWWPFVL+SMV++GRVWCGVLCPEGAL EFAS+HGRG+AIP W+RWGGWPF Sbjct: 61 LAAQFVFWGIWWPFVLLSMVMLGRVWCGVLCPEGALAEFASKHGRGKAIPHWMRWGGWPF 120 Query: 144 VAFALTTVYGQMVSVYQYPKAVLLVLGGSTVGAMIIGYLYGRDKRVWCKYLCPVNGVFGL 203 VAF +TT+YGQMVSVYQYPKAVLLVLGGST+ A++IG LYGR+KRVWCKYLCPVNGVF L Sbjct: 121 VAFGITTIYGQMVSVYQYPKAVLLVLGGSTLAAIVIGLLYGREKRVWCKYLCPVNGVFSL 180 Query: 204 LAKLAPVHYKVNEDAWRASY---HPEHKIIPINCAPLVPLRNMKGASDCHMCGRCSGHRD 260 LA+LAP HYKV+EDAWR SY H++IPINCAPLVPLRNMKGASDCHMCGRCSGHRD Sbjct: 181 LARLAPFHYKVDEDAWRRSYKNGEHGHRVIPINCAPLVPLRNMKGASDCHMCGRCSGHRD 240 Query: 261 AIALSFRPPAVEVVHFGKTQNNLWESALVLYGLLGIAIGAFHWTVSPWFIAIKQDIATWL 320 AIAL++R P+ EVV G ++W++AL+LYGLLGIAIGAFHWT S WFI +K ATWL Sbjct: 241 AIALTWRAPSSEVVQLGDKHASVWDTALILYGLLGIAIGAFHWTASRWFIDLKMFFATWL 300 Query: 321 IERDIMWPFGTQAPWWLLTNYPQQSDVFTWLDGAMVVGYILATGLVLGTGVALMFGLATR 380 ++ DI WP T APW+L T+YP+Q+DVF+WLDG MV+GYILAT LV GT + ++ ATR Sbjct: 301 VDHDIAWPLDTNAPWFLFTHYPEQNDVFSWLDGTMVIGYILATALVYGTVLLILMTGATR 360 Query: 381 LLGKWEWSRFNHLVQALIPLAGCGVFVGLSATTISLLRAEHWPVYWANDVRAALLSAMTL 440 +LG++ R +HL Q LIPLAG GVF+GLSATT+SLLRAEH P++WA+DVR A+L+ L Sbjct: 361 MLGRFSSVRLHHLTQGLIPLAGAGVFLGLSATTLSLLRAEHVPLWWASDVRIAILAIANL 420 Query: 441 WSLWLCWKVVARHATHRFQQVLAMLPLMGGLALVNTAWWLMFWGW 485 WS WL W V R+ Q+ LAML LA+V++AWWLMFWGW Sbjct: 421 WSAWLAWLVTRRYTERFVQRALAMLWFAAALAVVDSAWWLMFWGW 465 >ref|YP_004227646.1| nitrogen fixation protein VnfA [Burkholderia sp. CCGE1001] gb|ADX54586.1| putative nitrogen fixation protein VnfA [Burkholderia sp. CCGE1001] Length = 468 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 319/465 (68%), Positives = 379/465 (81%), Gaps = 3/465 (0%) Query: 24 MTTCTQSPTLLTRTGDWMRRHGAFIRGLQWIVVAVYALLILVPVFLPLPDETAHLWSNLT 83 M+T P L G WM+RHG+ IRG+QW+VVAVYALLI+VP +PLPD++AHLW+NLT Sbjct: 1 MSTVMTRPGRLAAAGQWMQRHGSVIRGIQWVVVAVYALLIIVPAVMPLPDDSAHLWNNLT 60 Query: 84 LIAQFAFWGIWWPFVLVSMVLMGRVWCGVLCPEGALTEFASRHGRGRAIPKWVRWGGWPF 143 L AQF FWGIWWPFVL+SMV++GRVWCGVLCPEGAL EFAS+HGRG+AIP W+RWGGWPF Sbjct: 61 LAAQFVFWGIWWPFVLLSMVMLGRVWCGVLCPEGALAEFASKHGRGKAIPHWMRWGGWPF 120 Query: 144 VAFALTTVYGQMVSVYQYPKAVLLVLGGSTVGAMIIGYLYGRDKRVWCKYLCPVNGVFGL 203 VAF +TT+YGQMVSVYQYPKAVLLVLGGSTV A++IG LYGR+KRVWCKYLCPVNGVF L Sbjct: 121 VAFGITTIYGQMVSVYQYPKAVLLVLGGSTVAAIVIGLLYGREKRVWCKYLCPVNGVFSL 180 Query: 204 LAKLAPVHYKVNEDAWRASY---HPEHKIIPINCAPLVPLRNMKGASDCHMCGRCSGHRD 260 LA+LAP HYKV+EDAWR SY H++IPINCAPLVPLRNMKGASDCHMCGRCSGHRD Sbjct: 181 LARLAPFHYKVDEDAWRRSYKNGEHGHRVIPINCAPLVPLRNMKGASDCHMCGRCSGHRD 240 Query: 261 AIALSFRPPAVEVVHFGKTQNNLWESALVLYGLLGIAIGAFHWTVSPWFIAIKQDIATWL 320 AIAL++R P+ EVV G + W++AL+LYGLLGIAIGAFHWT S WFI +K ATWL Sbjct: 241 AIALTWRAPSSEVVELGDKHASAWDTALILYGLLGIAIGAFHWTASRWFIDLKMFFATWL 300 Query: 321 IERDIMWPFGTQAPWWLLTNYPQQSDVFTWLDGAMVVGYILATGLVLGTGVALMFGLATR 380 ++ DI WP T APW+L T+YP+Q+DVF+WLDG MV+GYILAT LV GT + L+ ATR Sbjct: 301 VDHDITWPLQTNAPWFLFTHYPEQNDVFSWLDGTMVIGYILATALVYGTALLLLLMGATR 360 Query: 381 LLGKWEWSRFNHLVQALIPLAGCGVFVGLSATTISLLRAEHWPVYWANDVRAALLSAMTL 440 +LG+ R +HL QALIPLAG GVF+GLSATT+SLLRAEH P++WA+DVR +L+ L Sbjct: 361 MLGRLSSVRLHHLTQALIPLAGAGVFLGLSATTLSLLRAEHVPLWWASDVRIGILAIANL 420 Query: 441 WSLWLCWKVVARHATHRFQQVLAMLPLMGGLALVNTAWWLMFWGW 485 WS WL W V R++ ++ LAML LA+V++AWWLMFWGW Sbjct: 421 WSAWLLWLVTRRYSARFVRRGLAMLWFAAALAVVDSAWWLMFWGW 465