BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3309.p         (111 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004681165.1| alkylphosphonate uptake [Cupriavidus necator...   186   9e-46
ref|YP_586979.1| alkylphosphonate utilization operon protein Phn...   185   2e-45
ref|ZP_00946881.1| PhnA protein [Ralstonia solanacearum UW551] >...   182   1e-44
ref|YP_003748613.1| alkylphosphonate utilization operon protein ...   182   2e-44
ref|YP_001353985.1| alkylphosphonate uptake protein [Janthinobac...   180   5e-44

>ref|YP_004681165.1| alkylphosphonate uptake [Cupriavidus necator N-1]
 gb|AEI79933.1| alkylphosphonate uptake [Cupriavidus necator N-1]
          Length = 113

 Score =  186 bits (472), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 91/112 (81%), Positives = 100/112 (89%), Gaps = 2/112 (1%)

Query: 1   MSTLPACPQCQSEFTYEDGSQFVCPECGHEWSAQAA-PAE-QARVWRDASGNVLQDGDTV 58
           MS LP CP+C SEFTYEDG  ++CPEC HEWSAQAA P E +ARV+RDA+GNVLQDGDTV
Sbjct: 1   MSALPPCPKCHSEFTYEDGGLYICPECAHEWSAQAAAPTEPEARVYRDAAGNVLQDGDTV 60

Query: 59  TVIKDLKLKGGGGVVKMGTKVKNIRLVEGDHDIDCKIDGFGSMGLKTEFVRK 110
           TVIKDLKLKG  GVVKMGTKVKNIRLV+GDHDIDCKIDGFG+M LK+EFVRK
Sbjct: 61  TVIKDLKLKGAAGVVKMGTKVKNIRLVDGDHDIDCKIDGFGAMSLKSEFVRK 112


>ref|YP_586979.1| alkylphosphonate utilization operon protein PhnA [Cupriavidus
           metallidurans CH34]
 gb|ABF11710.1| alkylphosphonate utilization operon protein PhnA [Cupriavidus
           metallidurans CH34]
          Length = 130

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 89/112 (79%), Positives = 98/112 (87%), Gaps = 2/112 (1%)

Query: 1   MSTLPACPQCQSEFTYEDGSQFVCPECGHEWSAQA-APAE-QARVWRDASGNVLQDGDTV 58
           MS LPACP C SE+TYEDG  F+CPEC HEWSAQA APAE + RV RD++GNVLQDGDTV
Sbjct: 18  MSALPACPNCHSEYTYEDGGLFICPECAHEWSAQASAPAEAEVRVHRDSAGNVLQDGDTV 77

Query: 59  TVIKDLKLKGGGGVVKMGTKVKNIRLVEGDHDIDCKIDGFGSMGLKTEFVRK 110
           TVIKDLKLKG  G +KMGTKVKNIRLV+GDHDIDCKIDGFG+M LK+EFVRK
Sbjct: 78  TVIKDLKLKGSAGTIKMGTKVKNIRLVDGDHDIDCKIDGFGAMSLKSEFVRK 129


>ref|ZP_00946881.1| PhnA protein [Ralstonia solanacearum UW551]
 ref|YP_002257264.1| phna protein alkylphosphonate uptake [Ralstonia solanacearum
           IPO1609]
 gb|EAP70629.1| PhnA protein [Ralstonia solanacearum UW551]
 emb|CAQ37172.1| phna protein alkylphosphonate uptake [Ralstonia solanacearum MolK2]
 emb|CAQ59147.1| phna protein alkylphosphonate uptake [Ralstonia solanacearum
           IPO1609]
          Length = 113

 Score =  182 bits (462), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 89/112 (79%), Positives = 99/112 (88%), Gaps = 2/112 (1%)

Query: 1   MSTLPACPQCQSEFTYEDGSQFVCPECGHEWSAQA-APAEQA-RVWRDASGNVLQDGDTV 58
           MSTLP CP+C SEFTYEDG  ++CPEC HEWSAQA APAE A RV+RD++GNVLQDGDTV
Sbjct: 1   MSTLPPCPKCHSEFTYEDGGVYICPECAHEWSAQATAPAETAGRVYRDSAGNVLQDGDTV 60

Query: 59  TVIKDLKLKGGGGVVKMGTKVKNIRLVEGDHDIDCKIDGFGSMGLKTEFVRK 110
           TVIKDLKLKG  GV+KMGTKVKNIRLV+ DHDIDCKIDG G+M LK+EFVRK
Sbjct: 61  TVIKDLKLKGSAGVIKMGTKVKNIRLVDSDHDIDCKIDGLGAMSLKSEFVRK 112


>ref|YP_003748613.1| alkylphosphonate utilization operon protein PhnA [Ralstonia
           solanacearum CFBP2957]
 emb|CBJ54233.1| alkylphosphonate utilization operon protein PhnA [Ralstonia
           solanacearum CFBP2957]
          Length = 113

 Score =  182 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 89/112 (79%), Positives = 99/112 (88%), Gaps = 2/112 (1%)

Query: 1   MSTLPACPQCQSEFTYEDGSQFVCPECGHEWSAQA-APAEQA-RVWRDASGNVLQDGDTV 58
           MSTLP CP+C SEFTYEDG  ++CPEC HEWSAQA APAE A RV+RD++GNVLQDGDTV
Sbjct: 1   MSTLPPCPKCHSEFTYEDGGVYICPECAHEWSAQADAPAETAGRVYRDSAGNVLQDGDTV 60

Query: 59  TVIKDLKLKGGGGVVKMGTKVKNIRLVEGDHDIDCKIDGFGSMGLKTEFVRK 110
           TVIKDLKLKG  GV+KMGTKVKNIRLV+ DHDIDCKIDG G+M LK+EFVRK
Sbjct: 61  TVIKDLKLKGSAGVIKMGTKVKNIRLVDSDHDIDCKIDGLGAMSLKSEFVRK 112


>ref|YP_001353985.1| alkylphosphonate uptake protein [Janthinobacterium sp. Marseille]
 gb|ABR89335.1| alkylphosphonate uptake protein [Janthinobacterium sp. Marseille]
          Length = 113

 Score =  180 bits (457), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 87/112 (77%), Positives = 98/112 (87%), Gaps = 2/112 (1%)

Query: 1   MSTLPACPQCQSEFTYEDGSQFVCPECGHEWSAQAA--PAEQARVWRDASGNVLQDGDTV 58
           MS LPACPQC SEFTYEDG  ++CPEC HEWSAQAA    EQA+V+RDA G VLQDGDTV
Sbjct: 1   MSNLPACPQCNSEFTYEDGGLYICPECAHEWSAQAATEAVEQAKVYRDAVGAVLQDGDTV 60

Query: 59  TVIKDLKLKGGGGVVKMGTKVKNIRLVEGDHDIDCKIDGFGSMGLKTEFVRK 110
           T+IKDLKLKG GGV+K+GTKVKNIRLV+ DHDIDCKIDGFG+M LK+EFV+K
Sbjct: 61  TIIKDLKLKGSGGVLKVGTKVKNIRLVDSDHDIDCKIDGFGAMSLKSEFVKK 112