BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3307.p (335 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776121.1| Na+-dependent transporter protein [Herbaspir... 558 e-157 ref|YP_004752455.1| putative sodium/bile acid symporter family p... 395 e-108 ref|ZP_03699047.1| Bile acid:sodium symporter [Lutiella nitrofer... 386 e-105 ref|YP_001348622.1| hypothetical protein PSPA7_3262 [Pseudomonas... 385 e-105 ref|YP_004847947.1| sodium/bile acid symporter family protein [P... 384 e-104 >ref|YP_003776121.1| Na+-dependent transporter protein [Herbaspirillum seropedicae SmR1] gb|ADJ64213.1| Na+-dependent transporter protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 310/335 (92%), Positives = 327/335 (97%) Query: 1 MARPRFLPDNMTLMLLAVVLTASFLPCTGQVAEAFDGLTTFMIGLLFFMHGAKLSREAVV 60 MARPRFLPDNMTL+LLAVV+TAS LPCTGQVAE FDGLTTFMIGLLFFMHGAKLSREAVV Sbjct: 1 MARPRFLPDNMTLLLLAVVVTASLLPCTGQVAEVFDGLTTFMIGLLFFMHGAKLSREAVV 60 Query: 61 AGFTHWKLHVTVLLCTFALFPLIGLALKPVLLQFITPELYLGLLFLCVLPSTVQSSIAFT 120 AGFTHWKLHVTVLLCTFALFPL+GLA KP+L FITPELYLGLLFLCVLPSTVQSSIAFT Sbjct: 61 AGFTHWKLHVTVLLCTFALFPLVGLAFKPLLTPFITPELYLGLLFLCVLPSTVQSSIAFT 120 Query: 121 SVARGNVPAAICAASASNLLGIFLTPLLVGVLVVAHDGGGHSSLDSILKIVYQLLLPFVA 180 SVARGNVPAAICAASASNLLGIFLTPLLVG LVVAH+G GHSSLDSILKIVYQLLLPFVA Sbjct: 121 SVARGNVPAAICAASASNLLGIFLTPLLVGALVVAHEGAGHSSLDSILKIVYQLLLPFVA 180 Query: 181 GQIARPFIGRWVERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPVSMLVALLVINA 240 GQIARP+IGRW+ERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVP+SMLVALLVINA Sbjct: 181 GQIARPWIGRWIERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPMSMLVALLVINA 240 Query: 241 VLLAIIMGLTTFGSRRLGFNKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVM 300 VLLA+IM LTT+GSRRLGF+KEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVM Sbjct: 241 VLLALIMALTTYGSRRLGFSKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVM 300 Query: 301 LFHQIQLMVCAVMAARYGARQDQVQAAVATESGGD 335 LFHQ+QLMVCAV+AARYGARQ++V+AAVA+ESGGD Sbjct: 301 LFHQLQLMVCAVLAARYGARQEEVEAAVASESGGD 335 >ref|YP_004752455.1| putative sodium/bile acid symporter family protein [Collimonas fungivorans Ter331] gb|AEK61632.1| Putative sodium/bile acid symporter family protein [Collimonas fungivorans Ter331] Length = 339 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 228/327 (69%), Positives = 270/327 (82%), Gaps = 1/327 (0%) Query: 1 MARPRFLPDNMTLMLLAVVLTASFLPCTGQVAEAFDGLTTFMIGLLFFMHGAKLSREAVV 60 M RPRFLPDN TL+L+ VL AS P GQVA +F+ +TT IGLLFF+HGAKLSREAVV Sbjct: 1 MVRPRFLPDNFTLLLVTTVLVASLFPAKGQVAVSFNLITTLAIGLLFFLHGAKLSREAVV 60 Query: 61 AGFTHWKLHVTVLLCTFALFPLIGLALKPVLLQFITPELYLGLLFLCVLPSTVQSSIAFT 120 G HW+LH+TVLL TFALFPL+GL KP+LL +TP+LYLG+LFLC LPSTVQSSIAFT Sbjct: 61 QGALHWRLHLTVLLATFALFPLLGLIFKPLLLPLVTPDLYLGILFLCTLPSTVQSSIAFT 120 Query: 121 SVARGNVPAAICAASASNLLGIFLTPLLVGVLVVAHDGGGHSSLDSILKIVYQLLLPFVA 180 SVARGNVPAA+C+ASASNLLGIFLTP+LVG++VV H G S DSIL IV QLLLPFVA Sbjct: 121 SVARGNVPAAVCSASASNLLGIFLTPVLVGLVVVTH-AQGKGSFDSILNIVMQLLLPFVA 179 Query: 181 GQIARPFIGRWVERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPVSMLVALLVINA 240 GQIAR +I +W++++K LK VDQ SILLVVY AFSEAVVQGLW ++P LV L+V+ A Sbjct: 180 GQIARRWICKWLDKHKIILKMVDQGSILLVVYTAFSEAVVQGLWQELPPLSLVGLIVVVA 239 Query: 241 VLLAIIMGLTTFGSRRLGFNKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVM 300 +LL +++ L T+ SRRLGF+KEDEITIVFCGSKKSLASGVPMAKVLF+ +GM++LP+M Sbjct: 240 LLLFVMLSLATWISRRLGFSKEDEITIVFCGSKKSLASGVPMAKVLFAGHTVGMIVLPLM 299 Query: 301 LFHQIQLMVCAVMAARYGARQDQVQAA 327 LFHQIQLMVCAV+A RY AR ++ A Sbjct: 300 LFHQIQLMVCAVLAQRYAARPIEIVAG 326 >ref|ZP_03699047.1| Bile acid:sodium symporter [Lutiella nitroferrum 2002] gb|EEG08346.1| Bile acid:sodium symporter [Lutiella nitroferrum 2002] Length = 330 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 222/330 (67%), Positives = 264/330 (80%), Gaps = 1/330 (0%) Query: 1 MARPRFLPDNMTLMLLAVVLTASFLPCTGQVAEAFDGLTTFMIGLLFFMHGAKLSREAVV 60 MARPRFLPDN TL L+ VL A+FLPC GQ A F +T I LLFF+HGAKLSREAV+ Sbjct: 1 MARPRFLPDNFTLALVITVLLATFLPCEGQTAVVFGKVTYAAIALLFFLHGAKLSREAVI 60 Query: 61 AGFTHWKLHVTVLLCTFALFPLIGLALKPVLLQFITPELYLGLLFLCVLPSTVQSSIAFT 120 AG THW+LH+ V TF LFP +G ALKP+L +TP+LYLG+LFLC LP+TVQSSIAFT Sbjct: 61 AGATHWRLHLLVFASTFILFPAMGFALKPILSPLVTPDLYLGVLFLCALPATVQSSIAFT 120 Query: 121 SVARGNVPAAICAASASNLLGIFLTPLLVGVLVVAHDGGGHSSLDSILKIVYQLLLPFVA 180 S+ARGN+PAA+C+ASAS+L+GIFLTPLLV VLVV+H GG SS SI+ I+ QLLLPF+A Sbjct: 121 SMARGNIPAAVCSASASSLIGIFLTPLLVSVLVVSH-AGGASSWHSIIDIMVQLLLPFLA 179 Query: 181 GQIARPFIGRWVERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPVSMLVALLVINA 240 GQ+AR +IG WVERNK+ L+FVDQ SILLVVY AFSEAV+QGLWH PV L LLV+N Sbjct: 180 GQVARRWIGGWVERNKAMLRFVDQGSILLVVYTAFSEAVIQGLWHNTPVKALAGLLVVNG 239 Query: 241 VLLAIIMGLTTFGSRRLGFNKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVM 300 VLLA+ + T +R+LGFNKEDEITIVFCGSKKSLASG+PMA VLF+ A+G ++LP+M Sbjct: 240 VLLALALFATRTAARKLGFNKEDEITIVFCGSKKSLASGIPMANVLFAGHAVGAIVLPLM 299 Query: 301 LFHQIQLMVCAVMAARYGARQDQVQAAVAT 330 LFHQ+QLMVCAV+A RY R + AA T Sbjct: 300 LFHQVQLMVCAVLAQRYRHRPESPAAAKQT 329 >ref|YP_001348622.1| hypothetical protein PSPA7_3262 [Pseudomonas aeruginosa PA7] gb|ABR84974.1| membrane protein, putative [Pseudomonas aeruginosa PA7] Length = 333 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 218/332 (65%), Positives = 270/332 (81%), Gaps = 1/332 (0%) Query: 1 MARPRFLPDNMTLMLLAVVLTASFLPCTGQVAEAFDGLTTFMIGLLFFMHGAKLSREAVV 60 M+RPRFLPDN TL L+A VL A+FLPC+GQ A F+ +T IGLLFF+HGAKLSR+A++ Sbjct: 1 MSRPRFLPDNFTLALIATVLLATFLPCSGQTAVVFEWVTNIGIGLLFFLHGAKLSRQAII 60 Query: 61 AGFTHWKLHVTVLLCTFALFPLIGLALKPVLLQFITPELYLGLLFLCVLPSTVQSSIAFT 120 AG THW+LH+ V CTF +FPL+GLALKP L +TPELYLG+LFLC LP+TVQSSIAFT Sbjct: 61 AGMTHWRLHLLVFACTFVMFPLLGLALKPALSPMVTPELYLGILFLCALPATVQSSIAFT 120 Query: 121 SVARGNVPAAICAASASNLLGIFLTPLLVGVLVVAHDGGGHSSLDSILKIVYQLLLPFVA 180 S+ARGNVPAA+C+AS S+LLG+FLTPLLV +L+ A +G ++LD+I KI QLL+PF+A Sbjct: 121 SLARGNVPAAVCSASVSSLLGVFLTPLLVKLLLGA-EGETGNALDAIGKITLQLLVPFIA 179 Query: 181 GQIARPFIGRWVERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPVSMLVALLVINA 240 GQ+ R +IG WVERNK L++VDQ SILLVVY AFS AV+QGLWH+VP L+ L V Sbjct: 180 GQVLRRWIGAWVERNKPVLRYVDQGSILLVVYTAFSAAVIQGLWHEVPWLALIGLTVACC 239 Query: 241 VLLAIIMGLTTFGSRRLGFNKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVM 300 V+LA+ + LTT +RRLGF+KEDEITIVFCGSKKSLA+GVPMAKVLF++ A+G ++LP+M Sbjct: 240 VILALALVLTTVLARRLGFSKEDEITIVFCGSKKSLATGVPMAKVLFATSAVGPMVLPLM 299 Query: 301 LFHQIQLMVCAVMAARYGARQDQVQAAVATES 332 LFHQIQLMVCAV+A RY R+D A +A S Sbjct: 300 LFHQIQLMVCAVLAQRYARRRDDAAAVLAEAS 331 >ref|YP_004847947.1| sodium/bile acid symporter family protein [Pseudogulbenkiania sp. NH8B] dbj|BAK77533.1| sodium/bile acid symporter family protein [Pseudogulbenkiania sp. NH8B] Length = 330 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 221/330 (66%), Positives = 263/330 (79%), Gaps = 1/330 (0%) Query: 1 MARPRFLPDNMTLMLLAVVLTASFLPCTGQVAEAFDGLTTFMIGLLFFMHGAKLSREAVV 60 MARPRFLPDN TL L+ VL A+FLPC GQ A F +T I LLFF+HGAKLSREAV+ Sbjct: 1 MARPRFLPDNFTLALVITVLLATFLPCEGQTAVVFGKVTYAAIALLFFLHGAKLSREAVI 60 Query: 61 AGFTHWKLHVTVLLCTFALFPLIGLALKPVLLQFITPELYLGLLFLCVLPSTVQSSIAFT 120 AG THW+LH+ V TF LFP +G ALKP+L +TP+LYLG+LFLC LP+TVQSSIAFT Sbjct: 61 AGATHWRLHLLVFASTFILFPAMGFALKPILSPLVTPDLYLGVLFLCALPATVQSSIAFT 120 Query: 121 SVARGNVPAAICAASASNLLGIFLTPLLVGVLVVAHDGGGHSSLDSILKIVYQLLLPFVA 180 S+ARGNVPAA+C+ASAS+L+GIFLTPLLV VLVV+H GG +S SI+ I+ QLLLPF+A Sbjct: 121 SMARGNVPAAVCSASASSLIGIFLTPLLVSVLVVSH-AGGATSWHSIIDIMVQLLLPFLA 179 Query: 181 GQIARPFIGRWVERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPVSMLVALLVINA 240 GQ+AR +IG WVERNK+ L+FVDQ SILLVVY AFSEAV+QGLWH PV L LLV+N Sbjct: 180 GQVARRWIGGWVERNKTMLRFVDQGSILLVVYTAFSEAVIQGLWHNTPVKALAGLLVVNG 239 Query: 241 VLLAIIMGLTTFGSRRLGFNKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVM 300 VLLA+ + T +R+LGFNKEDEITIVFCGSKKSLASG+PMA VLF+ A+G ++LP+M Sbjct: 240 VLLALALFATRTAARKLGFNKEDEITIVFCGSKKSLASGIPMANVLFAGHAVGAIVLPLM 299 Query: 301 LFHQIQLMVCAVMAARYGARQDQVQAAVAT 330 LFHQ+QLMVCAV+A RY R + A T Sbjct: 300 LFHQVQLMVCAVLAQRYRHRPESPVAVKQT 329