BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3305.p (423 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776119.1| major facilitator superfamily permease [Herb... 539 e-151 ref|YP_004752457.1| putative transmembrane protein [Collimonas f... 425 e-117 ref|YP_004200507.1| major facilitator superfamily protein [Geoba... 414 e-113 ref|YP_842081.1| MFS family transporter [Ralstonia eutropha H16]... 401 e-109 ref|YP_003748471.1| permease, Major facilitator Superfamily [Ral... 377 e-102 >ref|YP_003776119.1| major facilitator superfamily permease [Herbaspirillum seropedicae SmR1] gb|ADJ64211.1| permease of the major facilitator superfamily protein [Herbaspirillum seropedicae SmR1] Length = 423 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 372/417 (89%), Positives = 386/417 (92%), Gaps = 6/417 (1%) Query: 5 SPSIPPDEAAESLRHHTPFKLFWCASVASTIALQMQIVAVGWQVYQLTHSAFDLGIVGLV 64 SP PP LRHHTPFKLFWCASVASTIALQMQIVAVGWQVYQLTHSA DLGIVGLV Sbjct: 13 SPEPPP-----PLRHHTPFKLFWCASVASTIALQMQIVAVGWQVYQLTHSALDLGIVGLV 67 Query: 65 QFIPSLILVFVVGHVADRFDRRNVARVSSLVEAAAAATLALGSLHGWLSREMIFVIVAII 124 QFIPSLILVFVVGHVADRFDRRNVARVS+LVEA AAATLA GSL GWL+RE+IFVIVA+I Sbjct: 68 QFIPSLILVFVVGHVADRFDRRNVARVSALVEALAAATLAAGSLGGWLNREIIFVIVAVI 127 Query: 125 GAGRAFSKPTMSALLPSLMSPKALPGAVAGSASATQFAIIIGPALGGFLYVAGPAVVYAS 184 GAGRAFSKPTMSALLPSLMSP+ LPGAVAGSASATQFAIIIGPALGGFLYVAGPAVVYAS Sbjct: 128 GAGRAFSKPTMSALLPSLMSPRQLPGAVAGSASATQFAIIIGPALGGFLYVAGPAVVYAS 187 Query: 185 SCALFIACSVLLSLIRRPAQVTAAQAAPAKPTGASLSSVFAGLAFIRSKPAIFGAISLDM 244 SC LF CS+LL LIRRPAQ A AA TGASLSSVFAGLAFIRSKPAIFGAISLDM Sbjct: 188 SCVLFTLCSLLLWLIRRPAQAGAPAAAAKP-TGASLSSVFAGLAFIRSKPAIFGAISLDM 246 Query: 245 FAVLLGGATALLPVFANDILHTGAVGLGLLRSAPAAGALIVALLLARFPLGGRVGRTMFI 304 FAVLLGGATALLPVFA+DILHTGA GLGLLRSAPAAGAL VAL LAR PLGGRVGRTMF+ Sbjct: 247 FAVLLGGATALLPVFAHDILHTGAAGLGLLRSAPAAGALAVALWLARRPLGGRVGRTMFV 306 Query: 305 AVAVFGLATIVFGLSRSFPLSLAALAVLGAADMISVVVRSSFVQLETPDAMRGRVSAVNS 364 AV VFGLAT+VFGLSRSFPLSLAALAVLGAADMISVVVRSSFVQLETPDAMRGRVSAVNS Sbjct: 307 AVGVFGLATMVFGLSRSFPLSLAALAVLGAADMISVVVRSSFVQLETPDAMRGRVSAVNS 366 Query: 365 VFIGTSNQLGEFESGLTAAWFGAVPAVLIGGIGTLLIVLLWMRLFPSLYQVDRLAAR 421 VFIGTSNQLGEFESGLTAAWFGAVPAVLIGG+GTLLIVLLW+RLFP+LY+VDRL +R Sbjct: 367 VFIGTSNQLGEFESGLTAAWFGAVPAVLIGGVGTLLIVLLWVRLFPALYRVDRLTSR 423 >ref|YP_004752457.1| putative transmembrane protein [Collimonas fungivorans Ter331] gb|AEK61634.1| putative transmembrane protein [Collimonas fungivorans Ter331] Length = 430 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 281/418 (67%), Positives = 339/418 (81%), Gaps = 10/418 (2%) Query: 1 MSVPSPSIPPDEAAESLRHHTPFKLFWCASVASTIALQMQIVAVGWQVYQLTHSAFDLGI 60 M+ P+ + P A+ES+ H PF LFW A VASTIA QMQIVAVGWQVYQLTHSAFDLG+ Sbjct: 1 MTAPASASP---ASESVLSHRPFTLFWGARVASTIANQMQIVAVGWQVYQLTHSAFDLGM 57 Query: 61 VGLVQFIPSLILVFVVGHVADRFDRRNVARVSSLVEAAAAATLALGSLHGWLSREMIFVI 120 VGLVQF+P+L L +VGHVADR+DRR +AR+ ++ AAA LA+GS++GWL ++ IF I Sbjct: 58 VGLVQFLPALFLALLVGHVADRYDRRKIARICLFIKGLAAAALAIGSIYGWLDKQAIFAI 117 Query: 121 VAIIGAGRAFSKPTMSALLPSLMSPKALPGAVAGSASATQFAIIIGPALGGFLYVAGPAV 180 V +IGA AF PT+ AL+P L+ + LP AVA +ASATQ A+IIGPALGGF+YV GP+ Sbjct: 118 VFVIGATHAFESPTLQALVPGLVPARLLPRAVAWAASATQTAVIIGPALGGFIYVLGPST 177 Query: 181 VYASSCALFIACSVLLSLIRRPAQVTAAQAAPAKPTGASLSSVFAGLAFIRSKPAIFGAI 240 VY SS LFI S+L+SLIR ++ + A+LSS+ AG+AFI+S+PAI GAI Sbjct: 178 VYTSSSVLFIGASLLVSLIR-------IESVLPRREPATLSSLLAGIAFIKSRPAILGAI 230 Query: 241 SLDMFAVLLGGATALLPVFANDILHTGAVGLGLLRSAPAAGALIVALLLARFPLGGRVGR 300 SLD+FAVLLGGATALLP++A+DIL TG +GLGLLRSAPA GAL A+ LAR PL RVGR Sbjct: 231 SLDLFAVLLGGATALLPIYAHDILATGPLGLGLLRSAPAVGALSTAIFLARRPLSRRVGR 290 Query: 301 TMFIAVAVFGLATIVFGLSRSFPLSLAALAVLGAADMISVVVRSSFVQLETPDAMRGRVS 360 +MFIAVAVFG+ATIVF LSRSF LSLA L VLGA+DMISVVVRSSFVQLETPD MRGRVS Sbjct: 291 SMFIAVAVFGVATIVFALSRSFVLSLATLVVLGASDMISVVVRSSFVQLETPDHMRGRVS 350 Query: 361 AVNSVFIGTSNQLGEFESGLTAAWFGAVPAVLIGGIGTLLIVLLWMRLFPSLYQVDRL 418 AVNSVFIGTSNQLGEFESG+TAAW G VPAVL+GG+GT+++VLLW+RLFP+L+ +D+L Sbjct: 351 AVNSVFIGTSNQLGEFESGVTAAWLGPVPAVLLGGVGTVVVVLLWIRLFPTLFGLDKL 408 >ref|YP_004200507.1| major facilitator superfamily protein [Geobacter sp. M18] gb|ADW15231.1| major facilitator superfamily MFS_1 [Geobacter sp. M18] Length = 428 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 263/405 (64%), Positives = 310/405 (76%), Gaps = 7/405 (1%) Query: 16 SLRHHTPFKLFWCASVASTIALQMQIVAVGWQVYQLTHSAFDLGIVGLVQFIPSLILVFV 75 S+ H PF+LFW A V S++ALQMQ VAVGWQ+Y LT S F LG+VGL QF+P +L Sbjct: 31 SVLRHEPFRLFWLARVCSSVALQMQAVAVGWQIYALTGSVFYLGLVGLAQFLPMFLLTLA 90 Query: 76 VGHVADRFDRRNVARVSSLVEAAAAATLALGSLHGWLSREMIFVIVAIIGAGRAFSKPTM 135 VGHVADR+DRR +A ++E A A LALGS GWLS+E I IV + G RAF PTM Sbjct: 91 VGHVADRYDRRRIAGACQVLEGLALALLALGSYGGWLSKEAILAIVFVAGGLRAFEGPTM 150 Query: 136 SALLPSLMSPKALPGAVAGSASATQFAIIIGPALGGFLYVAGPAVVYASSCALFIACSVL 195 AL+P L+ + +P A A SASA Q A I GPALGG LY GP VY S+ ALF A S L Sbjct: 151 LALVPWLVPQELIPRASAWSASANQTASIAGPALGGLLYALGPTTVYGSAAALFFAASFL 210 Query: 196 LSLIRRPAQVTAAQAAPAKPTGASLSSVFAGLAFIRSKPAIFGAISLDMFAVLLGGATAL 255 LS IR + AP++ A++ S+FAG+AFIRS+ I GAISLD+FAVLLGGATAL Sbjct: 211 LSRIR-------TERAPSRREPATVRSLFAGIAFIRSRQEILGAISLDLFAVLLGGATAL 263 Query: 256 LPVFANDILHTGAVGLGLLRSAPAAGALIVALLLARFPLGGRVGRTMFIAVAVFGLATIV 315 LPVFA DILHTG +GLGLLR+APAAGAL V+L LAR PL RVGRTMF++V +FG+ATIV Sbjct: 264 LPVFARDILHTGPIGLGLLRAAPAAGALGVSLFLARNPLRHRVGRTMFLSVLIFGVATIV 323 Query: 316 FGLSRSFPLSLAALAVLGAADMISVVVRSSFVQLETPDAMRGRVSAVNSVFIGTSNQLGE 375 FGLS SFPLS+ AL VLGAAD++SVV+R+S VQ+ETPD MRGRVSAVNS+FIGTSNQLGE Sbjct: 324 FGLSTSFPLSMGALMVLGAADIVSVVIRASLVQIETPDEMRGRVSAVNSMFIGTSNQLGE 383 Query: 376 FESGLTAAWFGAVPAVLIGGIGTLLIVLLWMRLFPSLYQVDRLAA 420 FESG+TAA FG VPAVLIGGIGT+++VLLWMRLFP L +VDRL Sbjct: 384 FESGVTAALFGTVPAVLIGGIGTVVVVLLWMRLFPRLLEVDRLGG 428 >ref|YP_842081.1| MFS family transporter [Ralstonia eutropha H16] emb|CAJ97351.1| Putative MFS transporter [Ralstonia eutropha H16] Length = 426 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 249/417 (59%), Positives = 306/417 (73%), Gaps = 6/417 (1%) Query: 2 SVPSPSIPPDEAAESLRHHTPFKLFWCASVASTIALQMQIVAVGWQVYQLTHSAFDLGIV 61 S+ SP+ A +S+ F+ +W A + +TI Q+ VAVGWQ+Y LT LG+V Sbjct: 11 SMSSPATVQAAAPDSVFRDAVFRRYWFARLCTTIGYQIFTVAVGWQMYDLTRDPLMLGMV 70 Query: 62 GLVQFIPSLILVFVVGHVADRFDRRNVARVSSLVEAAAAATLALGSLHGWLSREMIFVIV 121 GLVQF+PS++L+ + GHVADRFDRR + R +EA AA +A+ SL GW+ IFV V Sbjct: 71 GLVQFLPSVVLILMSGHVADRFDRRRIVRTCQAIEALLAAGMAVASLSGWIDSHHIFVFV 130 Query: 122 AIIGAGRAFSKPTMSALLPSLMSPKALPGAVAGSASATQFAIIIGPALGGFLYVAGPAVV 181 A+IGA RAF PT+ ALLPS+++P+ LP AVA ++SA Q AIIIGPA+GGF YVAGP VV Sbjct: 131 ALIGATRAFETPTLQALLPSVVTPRQLPRAVALASSAGQAAIIIGPAIGGFAYVAGPGVV 190 Query: 182 YASSCALFIACSVLLSLIRRPAQVTAAQAAPAKPTGASLSSVFAGLAFIRSKPAIFGAIS 241 Y S LF +VL+S +T QAA S+ +VFAG A+IRS+P + GAIS Sbjct: 191 YGLSATLFAIAAVLVS------GITLRQAAQRLTAPVSVRTVFAGFAYIRSRPVLLGAIS 244 Query: 242 LDMFAVLLGGATALLPVFANDILHTGAVGLGLLRSAPAAGALIVALLLARFPLGGRVGRT 301 LD+FAVLLGGA ALLP++A DILHTG GLGLLRS+PA GAL++AL LAR PL R GR Sbjct: 245 LDLFAVLLGGAVALLPIYARDILHTGPWGLGLLRSSPAVGALVMALWLARHPLNRRAGRI 304 Query: 302 MFIAVAVFGLATIVFGLSRSFPLSLAALAVLGAADMISVVVRSSFVQLETPDAMRGRVSA 361 MF AVA+FG+AT+VFG+S PLS+ AL VLGA+DMISVVVRS+ VQLETPD MRGRV A Sbjct: 305 MFGAVALFGVATVVFGVSTWLPLSMVALVVLGASDMISVVVRSTLVQLETPDDMRGRVGA 364 Query: 362 VNSVFIGTSNQLGEFESGLTAAWFGAVPAVLIGGIGTLLIVLLWMRLFPSLYQVDRL 418 VNSVFIG SNQLGEFESG+TAA G V AV++GG+GTLL+V LWMRLFP+L DRL Sbjct: 365 VNSVFIGASNQLGEFESGVTAALLGPVGAVILGGVGTLLVVALWMRLFPALAARDRL 421 >ref|YP_003748471.1| permease, Major facilitator Superfamily [Ralstonia solanacearum CFBP2957] emb|CBJ54085.1| putative permease, Major facilitator Superfamily [Ralstonia solanacearum CFBP2957] Length = 424 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 247/396 (62%), Positives = 301/396 (76%), Gaps = 7/396 (1%) Query: 23 FKLFWCASVASTIALQMQIVAVGWQVYQLTHSAFDLGIVGLVQFIPSLILVFVVGHVADR 82 F+LFWCA +++T A QM VAVGWQ+Y+LT SA+ LG+VGL QF+PS++LV GH+ADR Sbjct: 27 FRLFWCARLSTTFAYQMFGVAVGWQIYELTRSAYVLGLVGLAQFLPSVVLVLASGHIADR 86 Query: 83 FDRRNVARVSSLVEAAAAATLALGSLHGWLSREMIFVIVAIIGAGRAFSKPTMSALLPSL 142 +DRR V R+ +EA AATLA +L G ++IFV V +IGA RAF PT+ ALLP L Sbjct: 87 YDRRRVVRICQAIEALVAATLASATLTGHAGIQLIFVFVVVIGAMRAFETPTLQALLPLL 146 Query: 143 MSPKALPGAVAGSASATQFAIIIGPALGGFLYVAGPAVVYASSCALFIACSVLLSLIRRP 202 + P LP AVA S+SA Q II+GPA+GGFLYVAG VVYA++ +LF+ VLL+ +R Sbjct: 147 VPPAVLPRAVALSSSAGQTGIILGPAVGGFLYVAGAPVVYATAASLFLLAHVLLAFMR-- 204 Query: 203 AQVTAAQAAPAKPTGASLSSVFAGLAFIRSKPAIFGAISLDMFAVLLGGATALLPVFAND 262 +AAP SL S+FAG+AFI+ +P + GAISLD+FAVLLGGATALLP++A D Sbjct: 205 ----IERAAPVNRP-VSLESLFAGIAFIKGRPVVLGAISLDLFAVLLGGATALLPIYARD 259 Query: 263 ILHTGAVGLGLLRSAPAAGALIVALLLARFPLGGRVGRTMFIAVAVFGLATIVFGLSRSF 322 IL TGA GLGLLRSAPA GAL +A+ LA PL VGR MF AVAVFGLAT+VFG+SR Sbjct: 260 ILGTGAWGLGLLRSAPAVGALAMAIFLAHQPLERHVGRVMFAAVAVFGLATLVFGVSRWL 319 Query: 323 PLSLAALAVLGAADMISVVVRSSFVQLETPDAMRGRVSAVNSVFIGTSNQLGEFESGLTA 382 PLS+AAL VLGA DMISVV+R+S VQL+TPD MRGRVSAVNSVF+G SNQLGEFESG+ A Sbjct: 320 PLSMAALVVLGAGDMISVVIRTSLVQLDTPDTMRGRVSAVNSVFVGASNQLGEFESGMVA 379 Query: 383 AWFGAVPAVLIGGIGTLLIVLLWMRLFPSLYQVDRL 418 G VP+V++GG+GTLL+V LWMRLFP L DRL Sbjct: 380 GLLGPVPSVVLGGLGTLLVVALWMRLFPDLTHRDRL 415