BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3300.p         (173 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776115.1| hypothetical protein Hsero_2711 [Herbaspiril...   335   2e-90
ref|NP_902334.1| hypothetical protein CV_2664 [Chromobacterium v...    99   2e-19
ref|YP_727649.1| hypothetical protein H16_A3206 [Ralstonia eutro...    96   3e-18
ref|YP_440194.1| hypothetical protein BTH_II2000 [Burkholderia t...    86   2e-15
ref|YP_003008521.1| paar repeat-containing protein [Aggregatibac...    86   3e-15

>ref|YP_003776115.1| hypothetical protein Hsero_2711 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64207.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 173

 Score =  335 bits (858), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 171/173 (98%), Positives = 171/173 (98%)

Query: 1   MSSAIIRKGDSTSHGGTVLEGLVSFNVLGLPAALVGHMVYCPRCKGSYAIVEGVRHFRCG 60
           MSSAIIRKGDSTSHGGTVLEGLVSFNVLGLPAALVGHMVYCPRCKGSYAIVEGVRHFRCG
Sbjct: 1   MSSAIIRKGDSTSHGGTVLEGLVSFNVLGLPAALVGHMVYCPRCKGSYAIVEGVRHFRCG 60

Query: 61  GNPVAVAGMKTACGAELQASQSAFLIGASASPVAAPLRATEASDEEVIEHWYSLEDGDGN 120
           GNPVAVAGMKTACGAELQASQSAFLIGASASPVAAPLRATEASDEEVIEHWYSLEDGDGN
Sbjct: 61  GNPVAVAGMKTACGAELQASQSAFLIGASASPVAAPLRATEASDEEVIEHWYSLEDGDGN 120

Query: 121 PIEGYLFDVYQQEKMLAQECHFLDGRSVPFACDASGMVMWLVGESEHVAKDMS 173
           PIEGYLFDVYQQEKMLAQECHFLDGRSVPFA DASGMVMWL GESEHVAKDMS
Sbjct: 121 PIEGYLFDVYQQEKMLAQECHFLDGRSVPFAGDASGMVMWLAGESEHVAKDMS 173


>ref|NP_902334.1| hypothetical protein CV_2664 [Chromobacterium violaceum ATCC 12472]
 gb|AAQ60334.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 198

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/138 (39%), Positives = 80/138 (57%), Gaps = 9/138 (6%)

Query: 1   MSSAIIRKGDSTSHGGTVLEGLVSFNVLGLPAALVGHMVYCPRCKGSYAIVEGVRHFRCG 60
           MS  IIR GD T HGGTVLE   +  + G PAA VGH V CP+CKG++ IVEG  +    
Sbjct: 14  MSKPIIRLGDKTDHGGTVLEAFPTLVIFGKPAAGVGHKVSCPKCKGTFVIVEGAANTSFM 73

Query: 61  GNPVAVAGMKTACGAELQASQSAFLI----GASASPVAAPLR-----ATEASDEEVIEHW 111
           G  VA+ GMKT+CGA L ASQ    I    GA+A+  ++P +        ++ E++ +  
Sbjct: 74  GKNVAIEGMKTSCGATLIASQGQSTINVDSGAAAAVTSSPAQIASALTAASASEKLFDQH 133

Query: 112 YSLEDGDGNPIEGYLFDV 129
           + + D +G P+  + + +
Sbjct: 134 FIVHDKNGAPLPNWPYTI 151


>ref|YP_727649.1| hypothetical protein H16_A3206 [Ralstonia eutropha H16]
 emb|CAJ94281.1| GP29 like protein (of Bacteriophage phiE125) [Ralstonia eutropha
          H16]
          Length = 174

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/84 (53%), Positives = 60/84 (71%)

Query: 1  MSSAIIRKGDSTSHGGTVLEGLVSFNVLGLPAALVGHMVYCPRCKGSYAIVEGVRHFRCG 60
          M   IIR+GD+T+HGG VLEG+ +F + G+P A VGHMV CP+CKG++ I+EG   F   
Sbjct: 1  MRKGIIRQGDTTTHGGEVLEGIPNFRIHGVPVAAVGHMVSCPQCKGAFPIIEGDTSFTAY 60

Query: 61 GNPVAVAGMKTACGAELQASQSAF 84
          G  +A+ GM TACGA+L +S S F
Sbjct: 61 GKSIALHGMHTACGAQLISSTSGF 84


>ref|YP_440194.1| hypothetical protein BTH_II2000 [Burkholderia thailandensis E264]
 gb|ABC34395.1| gp29 [Burkholderia thailandensis E264]
          Length = 175

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 69/182 (37%), Positives = 89/182 (48%), Gaps = 24/182 (13%)

Query: 1   MSSAIIRKGDSTSHGGTVLEGLVSFNVLGLPAALVGHMVYCPRCKGSYAIVEGVRH--FR 58
           M SA+IR+GD+TSHGG VL G  +  V G P AL G MV CP+C G Y IV GVR+    
Sbjct: 1   MGSALIREGDTTSHGGRVLAGTSTNIVYGKPLALEGDMVSCPKCGGIYPIV-GVRNRSMT 59

Query: 59  CGGNPVAVAGMKTACGAELQASQ---SAFLIGASASPV----AAPLRATEASDEEVIEHW 111
            G  PVA  G KTACGA L ASQ   +  L   +  PV    +   R    S+E     +
Sbjct: 60  FGDRPVATEGDKTACGATLIASQGTATVELTSGAGGPVGKGKSVVPRPAAQSNEAYRGRF 119

Query: 112 YSLEDGDGNPIEGYLFDVYQQEKMLAQECHFLDGRSVPFACDASGMVMWLVGESEHVAKD 171
             ++D    PI  + + V              DG+++    DA+G   WL   S H A  
Sbjct: 120 QLVDDKTREPIANHPYTVTSA-----------DGQTIQGTTDATGHTDWL---SSHQASS 165

Query: 172 MS 173
           +S
Sbjct: 166 LS 167


>ref|YP_003008521.1| paar repeat-containing protein [Aggregatibacter aphrophilus
          NJ8700]
 gb|ACS98434.1| paar repeat-containing protein [Aggregatibacter aphrophilus
          NJ8700]
          Length = 88

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/83 (57%), Positives = 55/83 (66%)

Query: 1  MSSAIIRKGDSTSHGGTVLEGLVSFNVLGLPAALVGHMVYCPRCKGSYAIVEGVRHFRCG 60
          MS  II  GD TSHGG VL+G  S  + G   AL+G MV CP+CKG+Y I EG    R  
Sbjct: 1  MSRKIILVGDRTSHGGVVLQGSHSMVIGGKNVALIGDMVSCPQCKGNYPIAEGSSRMREN 60

Query: 61 GNPVAVAGMKTACGAELQASQSA 83
          G  VA+ GMKTACGAEL ASQS+
Sbjct: 61 GRGVALEGMKTACGAELIASQSS 83