BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3299.p (212 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776114.1| hypothetical protein Hsero_2710 [Herbaspiril... 408 e-112 ref|YP_724542.1| hypothetical protein H16_A0022 [Ralstonia eutro... 217 9e-55 ref|YP_002980244.1| hypothetical protein Rpic12D_0265 [Ralstonia... 194 6e-48 ref|ZP_02906393.1| conserved hypothetical protein [Burkholderia ... 139 2e-31 ref|NP_901795.1| hypothetical protein CV_2125 [Chromobacterium v... 137 9e-31 >ref|YP_003776114.1| hypothetical protein Hsero_2710 [Herbaspirillum seropedicae SmR1] gb|ADJ64206.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 212 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 212/212 (100%), Positives = 212/212 (100%) Query: 1 MTRNIPEPAVKPIAPEVRLLAAMAYGEASTQNNADEIYALASVLKRQRDARGYSSMEAFV 60 MTRNIPEPAVKPIAPEVRLLAAMAYGEASTQNNADEIYALASVLKRQRDARGYSSMEAFV Sbjct: 1 MTRNIPEPAVKPIAPEVRLLAAMAYGEASTQNNADEIYALASVLKRQRDARGYSSMEAFV 60 Query: 61 RGESSFSFVVSDGNKRYQLFRLSTDTQILSDPVMKTAVEAAENALADGPDRSNGAWFWDG 120 RGESSFSFVVSDGNKRYQLFRLSTDTQILSDPVMKTAVEAAENALADGPDRSNGAWFWDG Sbjct: 61 RGESSFSFVVSDGNKRYQLFRLSTDTQILSDPVMKTAVEAAENALADGPDRSNGAWFWDG 120 Query: 121 ADISSNYLKHFKVKNGIRFGHPSHNIYSIKESSKLVIKHKTVKKKINGEIKIEKQEVYRY 180 ADISSNYLKHFKVKNGIRFGHPSHNIYSIKESSKLVIKHKTVKKKINGEIKIEKQEVYRY Sbjct: 121 ADISSNYLKHFKVKNGIRFGHPSHNIYSIKESSKLVIKHKTVKKKINGEIKIEKQEVYRY 180 Query: 181 DHIYVSTAAHGGTIFWKQDAAYLRHTKAKEYK 212 DHIYVSTAAHGGTIFWKQDAAYLRHTKAKEYK Sbjct: 181 DHIYVSTAAHGGTIFWKQDAAYLRHTKAKEYK 212 >ref|YP_724542.1| hypothetical protein H16_A0022 [Ralstonia eutropha H16] emb|CAJ91174.1| conserved hypothetical protein [Ralstonia eutropha H16] Length = 204 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 122/196 (62%), Positives = 150/196 (76%) Query: 16 EVRLLAAMAYGEASTQNNADEIYALASVLKRQRDARGYSSMEAFVRGESSFSFVVSDGNK 75 E RLLAAMAYGE+ST + +E+ ALA+V+ RQ ARGYS++ AF E+SFS+VV+DGNK Sbjct: 8 ETRLLAAMAYGESSTADVFEEMAALANVMVRQSRARGYSTIAAFTAKEASFSYVVADGNK 67 Query: 76 RYQLFRLSTDTQILSDPVMKTAVEAAENALADGPDRSNGAWFWDGADISSNYLKHFKVKN 135 RY + D +I + P M AV+AA+NAL G D SNGA+FWDGADI SNY HFKV Sbjct: 68 RYAKLMTAKDEEIENSPSMSDAVKAAKNALNGGEDYSNGAYFWDGADIRSNYKNHFKVAK 127 Query: 136 GIRFGHPSHNIYSIKESSKLVIKHKTVKKKINGEIKIEKQEVYRYDHIYVSTAAHGGTIF 195 GIRF PSHNIY IKES+KLV K KT K K+NG+I+ K+E++RYDHIY STAA+GGTIF Sbjct: 128 GIRFTDPSHNIYGIKESTKLVKKIKTTKIKVNGKIETRKEELWRYDHIYQSTAAYGGTIF 187 Query: 196 WKQDAAYLRHTKAKEY 211 WKQ+ Y+R+T AKEY Sbjct: 188 WKQNPDYIRYTHAKEY 203 >ref|YP_002980244.1| hypothetical protein Rpic12D_0265 [Ralstonia pickettii 12D] gb|ACS61572.1| conserved hypothetical protein [Ralstonia pickettii 12D] Length = 207 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 110/208 (52%), Positives = 142/208 (68%), Gaps = 1/208 (0%) Query: 5 IPEPAVKPIAPEVRLLAAMAYGEASTQNNADEIYALASVLKRQRDARGYSSMEAFVRGES 64 + + A+ +APE RLLAA+AYGE+STQN +E+ ALASV+ RQ ARGY S+EAF + Sbjct: 1 MSQSAISNLAPEERLLAAIAYGESSTQNKYEEMAALASVMVRQMKARGYQSIEAFTSKDP 60 Query: 65 SFSFVVSDGNKRYQLFRLSTDTQILSDPVMKTAVEAAENALADGPDRSNGAWFWDGADIS 124 +FSFV +DGNKRY L +T +I M AV AA NA + G D SNGA+FWDGADI Sbjct: 61 TFSFVRTDGNKRYALLMEATADEIGKSAPMTHAVRAARNAFSGGFDYSNGAYFWDGADIK 120 Query: 125 SNYLKHFKVKNGIRFGHPSHNIYSIKESSKLVIKHKTVKKKINGEIKIEKQEVYRYDHIY 184 SNY KH KV +G+R P+HN+Y I +S + I +KTVKKK+NG+ ++EV RY Y Sbjct: 121 SNYSKHSKVWHGVRV-DPAHNVYGIPDSRRTKILYKTVKKKVNGKTASVQEEVGRYSWAY 179 Query: 185 VSTAAHGGTIFWKQDAAYLRHTKAKEYK 212 STA GGTIFW+ ++ T+AKEYK Sbjct: 180 ESTAGVGGTIFWRYSRDFVNVTRAKEYK 207 >ref|ZP_02906393.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5] gb|EDT42458.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5] Length = 204 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 78/201 (38%), Positives = 120/201 (59%), Gaps = 2/201 (0%) Query: 13 IAPEVRLLAAMAYGEASTQNNADEIYALASVLKRQRDARGYSSMEAFVRGESSFSFVVSD 72 I ++RLLAA+AYGEAST N+++EI +A + + A G ++ + ++S+ Sbjct: 5 IDRDMRLLAAIAYGEASTANDSEEIGGIAFAVANRCRAWGGKAVFELRTADPNYSYAWDG 64 Query: 73 GNKRYQLFRLSTDTQILSDPVMKTAVEAAENALADG-PDRSNGAWFWDGADISSNYLKHF 131 N R+ D +I + M AV+ A AL D PD SNGA++WDG D +NY H Sbjct: 65 SNARFNKLMRVPDNEIALNRAMALAVDWARKALLDERPDPSNGAFWWDGLDFKTNYGNHP 124 Query: 132 KVKNGIRFGHPSHNIYSIKESSKLVIKHKTVKKKINGEIKIEKQEVYRYDHIYVSTAAHG 191 KV++G ++G SHNI+ + E + VI H ++ K G+I ++ E RYD ++VSTAAHG Sbjct: 125 KVRDGFKWGSQSHNIFGVPEKRREVIVHWKIRHKRTGKI-VDGGERGRYDSVWVSTAAHG 183 Query: 192 GTIFWKQDAAYLRHTKAKEYK 212 GT+FW+ + YL+ + K Y+ Sbjct: 184 GTVFWQHNPDYLKASGGKSYR 204 >ref|NP_901795.1| hypothetical protein CV_2125 [Chromobacterium violaceum ATCC 12472] gb|AAQ59798.1| hypothetical protein CV_2125 [Chromobacterium violaceum ATCC 12472] Length = 202 Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 77/198 (38%), Positives = 122/198 (61%), Gaps = 2/198 (1%) Query: 16 EVRLLAAMAYGEASTQNNADEIYALASVLKRQRDARGYSSMEAFVRGESSFSFVVSDGNK 75 + R LAA+AYGEAS N+A+EI +A + + A G +++ + + ++++ V DGN+ Sbjct: 6 QTRKLAAIAYGEASGANDANEIGGIAWAVANRARAWGGKTVDGLLAADPNYTYAVKDGNQ 65 Query: 76 RYQLFRLSTDTQILSDPVMKTAVEAAENALAD-GPDRSNGAWFWDGADISSNYLKHFKVK 134 RY +T+ I +DP MK AVE+A+ ALA+ G D SNGA++WDG D SN+ H KVK Sbjct: 66 RYAKLMKATEAAIAADPGMKLAVESAKAALANSGNDPSNGAYWWDGKDFKSNFDNHPKVK 125 Query: 135 NGIRFGHPSHNIYSIKESSKLVIKHKTVKKKINGEIKIEKQEVYRYDHIYVSTAAHGGTI 194 +G P HNI+ +K+ + + V+ K G+ ++ + ++ ++ STAA+G TI Sbjct: 126 DGFHITDPKHNIFDVKDVAHPTTIYWKVRDKKTGK-EVNSKVRGKFQFVWESTAAYGSTI 184 Query: 195 FWKQDAAYLRHTKAKEYK 212 FWK DA Y++ T K Y+ Sbjct: 185 FWKHDADYIKATGGKAYR 202