BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3295.p (305 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776110.1| transcription regulator protein [Herbaspiril... 540 e-152 ref|YP_003908764.1| LysR family transcriptional regulator [Burkh... 376 e-102 ref|YP_004227077.1| LysR family transcriptional regulator [Burkh... 370 e-100 ref|ZP_02883338.1| transcriptional regulator, LysR family [Burkh... 370 e-100 ref|YP_003742886.1| LysR family transcripitonal regulator [Erwin... 322 4e-86 >ref|YP_003776110.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64202.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 289/305 (94%), Positives = 299/305 (98%) Query: 1 MSLLDHIEFSDLRIFVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERLSTQLLYRSSRA 60 MS+LDHIEFSDLR+FVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERL+TQLLYRSSRA Sbjct: 1 MSILDHIEFSDLRVFVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERLATQLLYRSSRA 60 Query: 61 ISPTAAGSELAARLEEGFEQIAQALGQLESSAEGSLGELRINVFADAAHLLIEPAIPEFV 120 ISPTAAGSELAARLE+GFEQI AL QL+SSA GSLGELRINVFADAAHLLIEPAIPEFV Sbjct: 61 ISPTAAGSELAARLEQGFEQIGAALSQLDSSAAGSLGELRINVFADAAHLLIEPAIPEFV 120 Query: 121 RLCPKVKLTIVVDDKPIDIVSEGYDAGIRYGHYVPEGMVTAPLTRAHRWVAAASPAYLDR 180 R CPKV+LTIVVDDKPIDIVSEGYDAGIRYGHYVPEGMVTAPLTRAHRWVAAA+PAYLDR Sbjct: 121 RQCPKVRLTIVVDDKPIDIVSEGYDAGIRYGHYVPEGMVTAPLTRAHRWVAAAAPAYLDR 180 Query: 181 HGRPLTLEDLQQHTCLQLLLGDNSSYQWEFGKGKHRQRIRVPGLVTINNTAATIAAAKAG 240 HGRPLTL+DLQQHTCLQLLLGDNSSYQWEFG+GKHRQRIRVPGLVTINNTAATIAAAKAG Sbjct: 181 HGRPLTLQDLQQHTCLQLLLGDNSSYQWEFGRGKHRQRIRVPGLVTINNTAATIAAAKAG 240 Query: 241 VGIAYLLEGRISKEIDEGSLEAILEEWAAPSEPFHMYYSSRRHAHPALRKLIDIIRLQHG 300 VGIAYLLEGRISKEI+EGSLE ILEEWAAPSEPFHMYYSSRRHAHPALRKLIDIIRLQHG Sbjct: 241 VGIAYLLEGRISKEIEEGSLETILEEWAAPSEPFHMYYSSRRHAHPALRKLIDIIRLQHG 300 Query: 301 LSRLR 305 LSRLR Sbjct: 301 LSRLR 305 >ref|YP_003908764.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN59473.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 309 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 186/304 (61%), Positives = 231/304 (75%) Query: 1 MSLLDHIEFSDLRIFVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERLSTQLLYRSSRA 60 M+ D I+F+DLR+F+ I+R SF+ AAI+LG TPSA SHAM+RLE+RL +LL R+SRA Sbjct: 1 MAKNDRIDFADLRLFLAIVRCRSFRLAAIELGQTPSAVSHAMRRLEDRLGAKLLNRTSRA 60 Query: 61 ISPTAAGSELAARLEEGFEQIAQALGQLESSAEGSLGELRINVFADAAHLLIEPAIPEFV 120 +SPT AG +LA+RLEEGF QI AL E+ LG LR+NVFADAAHLLI PA+PEF Sbjct: 61 VSPTEAGLDLASRLEEGFNQIGSALESFEAPGTARLGSLRLNVFADAAHLLIAPALPEFA 120 Query: 121 RLCPKVKLTIVVDDKPIDIVSEGYDAGIRYGHYVPEGMVTAPLTRAHRWVAAASPAYLDR 180 RLCP+V+LT+VVD++PIDIV+EGYDAGIRYGH+VPE M+ PLT RWV AASPAYL + Sbjct: 121 RLCPEVQLTVVVDNRPIDIVAEGYDAGIRYGHHVPEDMIAVPLTGPQRWVMAASPAYLKK 180 Query: 181 HGRPLTLEDLQQHTCLQLLLGDNSSYQWEFGKGKHRQRIRVPGLVTINNTAATIAAAKAG 240 HG P + +L H CLQLLLGDNSSY+WE + IRVPG +TIN+TA TI+A KAG Sbjct: 181 HGTPRHVSELADHNCLQLLLGDNSSYRWEVNVAGKKSPIRVPGSITINDTATTISACKAG 240 Query: 241 VGIAYLLEGRISKEIDEGSLEAILEEWAAPSEPFHMYYSSRRHAHPALRKLIDIIRLQHG 300 +GIAYLLE RI+ E+ SL +L+E A +P HMYYS RR+ HPAL LI+IIR Q Sbjct: 241 MGIAYLLEARIADELARRSLRVVLDEHACAEDPIHMYYSGRRYNHPALLSLINIIRKQQS 300 Query: 301 LSRL 304 L+++ Sbjct: 301 LAKI 304 >ref|YP_004227077.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gb|ADX54017.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 309 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 176/300 (58%), Positives = 230/300 (76%) Query: 5 DHIEFSDLRIFVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERLSTQLLYRSSRAISPT 64 D I+F+DL++F+ I+R GSF+ AA++ G TPSA SHAM+RLE+RL +LL R+SRA+SPT Sbjct: 5 DRIDFADLKLFLAIVRCGSFRLAAVEAGQTPSAVSHAMRRLEDRLGAKLLNRTSRAVSPT 64 Query: 65 AAGSELAARLEEGFEQIAQALGQLESSAEGSLGELRINVFADAAHLLIEPAIPEFVRLCP 124 AG +LA+RL++GF QI AL + LG LR+NVFADAAHLLI PA+PEF R+CP Sbjct: 65 EAGLDLASRLQDGFNQIGSALESFAAPGTARLGSLRLNVFADAAHLLIAPALPEFARVCP 124 Query: 125 KVKLTIVVDDKPIDIVSEGYDAGIRYGHYVPEGMVTAPLTRAHRWVAAASPAYLDRHGRP 184 V+LT+VVD++PIDIV+EGYDAGIRYGH+VPE M+ PLTR RWV ASPAYL +HG P Sbjct: 125 GVQLTVVVDNRPIDIVAEGYDAGIRYGHHVPEDMIAVPLTRPQRWVMVASPAYLKKHGTP 184 Query: 185 LTLEDLQQHTCLQLLLGDNSSYQWEFGKGKHRQRIRVPGLVTINNTAATIAAAKAGVGIA 244 L +L H CLQLLLGDNSSY+WE ++ IRVPG++TIN+T TI+A KAG+GIA Sbjct: 185 RQLGELANHQCLQLLLGDNSSYRWEVDVAGKKKSIRVPGVITINDTVTTISACKAGMGIA 244 Query: 245 YLLEGRISKEIDEGSLEAILEEWAAPSEPFHMYYSSRRHAHPALRKLIDIIRLQHGLSRL 304 Y+LE RI+ E+ +L+ +LEE A +P H+YYSSRR+ HPAL +LI++IR + L ++ Sbjct: 245 YVLEARIADELARRTLKVVLEEHACAEDPLHIYYSSRRYNHPALLRLINLIRERQSLPKI 304 >ref|ZP_02883338.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gb|EDT10770.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 309 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 181/304 (59%), Positives = 229/304 (75%) Query: 1 MSLLDHIEFSDLRIFVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERLSTQLLYRSSRA 60 M+ D I+F+DLR+F+ I+R SF+ AI+LG TPSA SHAM+RLE+RL +LL R+SRA Sbjct: 1 MAKNDRIDFADLRLFLAIVRCRSFRLTAIELGQTPSAVSHAMRRLEDRLGAKLLNRTSRA 60 Query: 61 ISPTAAGSELAARLEEGFEQIAQALGQLESSAEGSLGELRINVFADAAHLLIEPAIPEFV 120 +SPT AG +LA+RLE+GF QI AL E+ LG LR+NVFADAAHLL+ PA+PEF Sbjct: 61 VSPTEAGLDLASRLEDGFNQIGSALESFEAPGTARLGSLRLNVFADAAHLLVAPALPEFA 120 Query: 121 RLCPKVKLTIVVDDKPIDIVSEGYDAGIRYGHYVPEGMVTAPLTRAHRWVAAASPAYLDR 180 RLCP V+LT+VVD++PIDIV+EGYDAGIRYGH+VPE M+ PLT +WV AASPAYL + Sbjct: 121 RLCPDVQLTVVVDNRPIDIVAEGYDAGIRYGHHVPEDMIAVPLTGPQQWVMAASPAYLKK 180 Query: 181 HGRPLTLEDLQQHTCLQLLLGDNSSYQWEFGKGKHRQRIRVPGLVTINNTAATIAAAKAG 240 HG P + +L H CLQLLLGDNSSY+WE + IRVPG +TIN+TA TI+A KAG Sbjct: 181 HGTPRHVSELADHNCLQLLLGDNSSYRWEVSVAGKKTPIRVPGSITINDTATTISACKAG 240 Query: 241 VGIAYLLEGRISKEIDEGSLEAILEEWAAPSEPFHMYYSSRRHAHPALRKLIDIIRLQHG 300 +GIAYLLE RI+ E+ +L +LE+ A +P HMYYS RR+ HPAL LI+IIR Q Sbjct: 241 MGIAYLLEARIADELARRTLRVVLEDHACAEDPLHMYYSGRRYNHPALLSLINIIRKQQS 300 Query: 301 LSRL 304 L+++ Sbjct: 301 LAKI 304 >ref|YP_003742886.1| LysR family transcripitonal regulator [Erwinia billingiae Eb661] emb|CAX61039.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661] Length = 331 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 156/301 (51%), Positives = 211/301 (70%) Query: 4 LDHIEFSDLRIFVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERLSTQLLYRSSRAISP 63 ++ ++F+DL+ F+ +LR SFK AAI+LGL+ SA SHA++R+E RL +LL R+SR++SP Sbjct: 19 MERVDFADLQAFLVVLRCRSFKLAAIELGLSSSAISHAIRRVETRLDARLLNRTSRSVSP 78 Query: 64 TAAGSELAARLEEGFEQIAQALGQLESSAEGSLGELRINVFADAAHLLIEPAIPEFVRLC 123 TA G E+A +L EGF+ I+ AL + + G LR+NVFADAA LI PA+ F Sbjct: 79 TALGLEVAEKLSEGFDVISSALDTVNAPGRSRFGVLRLNVFADAAAQLIVPALKAFAEQW 138 Query: 124 PKVKLTIVVDDKPIDIVSEGYDAGIRYGHYVPEGMVTAPLTRAHRWVAAASPAYLDRHGR 183 P V+LT+VV+D+P+DI SEG+DAG+RYGH VPE MV LT RW+ SP Y+ RHG Sbjct: 139 PDVRLTVVVEDRPVDITSEGFDAGMRYGHLVPEDMVAVALTDTQRWIVVGSPEYVKRHGV 198 Query: 184 PLTLEDLQQHTCLQLLLGDNSSYQWEFGKGKHRQRIRVPGLVTINNTAATIAAAKAGVGI 243 P T +L +H CLQLLLG+N+S++WEF + VPG +T+ +T+ TIAAA G+G+ Sbjct: 199 PTTPAELSEHNCLQLLLGNNASFRWEFDGADGVYSMSVPGAITLKDTSTTIAAAIDGIGL 258 Query: 244 AYLLEGRISKEIDEGSLEAILEEWAAPSEPFHMYYSSRRHAHPALRKLIDIIRLQHGLSR 303 AY+LE R+ E+ GSL +L A EPFHMYYSSRR+ HPALR+LI+IIR +GL Sbjct: 259 AYVLESRVDAELASGSLINVLPSHACQGEPFHMYYSSRRYVHPALRELINIIRRNNGLQT 318 Query: 304 L 304 L Sbjct: 319 L 319